Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv02391 Davidia involucrata HOM05D003897 ORTHO05D183109 7.2e-65 250.4 122 100.0
Dinv09911 Davidia involucrata HOM05D003897 ORTHO05D180432 1.7e-21 106.3 94 62.8
Dinv15751 Davidia involucrata HOM05D003897 ORTHO05D005095 1.2e-14 83.6 49 89.8
ECA240G4340 Erigeron canadensis HOM05D003897 ORTHO05D005095 1.2e-14 83.6 49 87.8
Gohir.A12G022600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 1.2e-14 83.6 49 87.8
Gohir.D12G023000 Gossypium hirsutum HOM05D003897 ORTHO05D005095 1.2e-14 83.6 49 87.8
Gorai.008G023500 Gossypium raimondii HOM05D003897 ORTHO05D005095 1.2e-14 83.6 49 87.8
Actinidia27966 Actinidia chinensis HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
Aa31LG8G13200 Aethionema arabicum HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
Ah.01g018040 Amaranthus hybridus HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
Aqoxy6G02891 Aquilegia oxysepala HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
AL3G47150 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
AT2G15430 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
BcaB03g16292 Brassica carinata HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
BcaC04g23047 Brassica carinata HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
BcaC06g36057 Brassica carinata HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
A07p05280 Brassica napus HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
A09p10760 Brassica napus HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
C07p08400 Brassica napus HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
C09p12730 Brassica napus HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
BolC7t41254H Brassica oleracea HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
BraA07t28320Z Brassica rapa HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
BraA09t36718Z Brassica rapa HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
Carub.0003s2927 Capsella rubella HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
ClCG11G007460 Citrullus lanatus HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
Ciclev10028849m.g Citrus clementina HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
MELO3C008589.2 Cucumis melo HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
CsaV3_2G010370 Cucumis sativus L. HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
Duzib248G1300 Durio zibethinus HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
HanXRQChr03g0070231 Helianthus annuus HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
HanXRQChr16g0530591 Helianthus annuus HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
Potri.009G097600 Populus trichocarpa HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
Sp3g28700 Schrenkiella parvula HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 85.7
Sc18g0005670 Simmondsia chinensis HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
Thecc.02G106100 Theobroma cacao HOM05D003897 ORTHO05D005095 1.5e-14 83.2 49 87.8
Dinv42183 Davidia involucrata HOM05D003897 ORTHO05D005095 2.0e-14 82.8 49 87.8
Nitab4.5_0000027g0450 Nicotiana tabacum HOM05D003897 ORTHO05D005095 2.0e-14 82.8 49 87.8
Nitab4.5_0010998g0010 Nicotiana tabacum HOM05D003897 ORTHO05D005095 2.0e-14 82.8 49 87.8
Hund06327 Selenicereus undatus HOM05D003897 ORTHO05D005095 2.0e-14 82.8 49 85.7
CAN.G184.18 Capsicum annuum HOM05D003897 ORTHO05D005095 2.6e-14 82.4 49 85.7
Thhalv10022739m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 2.6e-14 82.4 49 85.7
PGR042G2465 Punica granatum HOM05D003897 ORTHO05D005095 2.6e-14 82.4 49 85.7
TWI79G1683 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 2.6e-14 82.4 49 85.7
CSS0022988 Camellia sinensis var. sinensis HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 85.7
Ca_18755_v3 Cicer arietinum L. HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 85.7
Gohir.A04G119600 Gossypium hirsutum HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 85.7
Gohir.D04G161200 Gossypium hirsutum HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 85.7
Gorai.012G149200 Gossypium raimondii HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 85.7
Hma1.2p1_0796F.1_g219060 Hydrangea macrophylla HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 85.7
Lj4g0008450 Lotus japonicus HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 85.7
Peaxi162Scf00188g00619 Petunia axillaris HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 85.7
Psat7g129720 Pisum sativum HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 85.7
Solyc05g010300.4 Solanum lycopersicum HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 83.7
Sopen05g006070 Solanum pennellii HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 83.7
THA.LOC104804386 Tarenaya hassleriana HOM05D003897 ORTHO05D005095 3.4e-14 82.0 49 85.7
MSTRG.27740 Avicennia marina HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
BolC9t54161H Brassica oleracea HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 83.7
CANSAT25G1851 Cannabis sativa HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 83.7
Cc02_g19130 Coffea canephora HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
Lsat_1_v5_gn_9_111421 Lactuca sativa HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
Manes.10G077334 Manihot esculenta HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
Medtr4g084150 Medicago truncatula HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 83.7
Oeu010392.2 Olea europaea HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
Oeu028249.2 Olea europaea HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
Phvul.002G097400 Phaseolus vulgaris HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
Sabra09G0074900 Salix brachista HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
SGA_v2.0_scaffold13G06605 Striga asiatica HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
SGA_v2.0_scaffold393G50705 Striga asiatica HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
TPR.G13205 Trifolium pratense HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 83.7
vmacro19519 Vaccinium macrocarpon HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 83.7
VMungo0251G0352 Vigna mungo HOM05D003897 ORTHO05D005095 4.5e-14 81.6 49 85.7
CDE04G0824 Ceratophyllum demersum HOM05D003897 ORTHO05D005095 5.8e-14 81.3 49 87.8
CDE06G1902 Ceratophyllum demersum HOM05D003897 ORTHO05D005095 5.8e-14 81.3 49 87.8
COL.COLO4_32614 Corchorus olitorius HOM05D003897 ORTHO05D005095 5.8e-14 81.3 49 85.7
Glyma.07G220900 Glycine max HOM05D003897 ORTHO05D005095 5.8e-14 81.3 49 83.7
Glyma.20G019200 Glycine max HOM05D003897 ORTHO05D005095 5.8e-14 81.3 49 83.7
Lj5C213T4 Lonicera japonica HOM05D003897 ORTHO05D005095 5.8e-14 81.3 49 83.7
Manes.07G075381 Manihot esculenta HOM05D003897 ORTHO05D005095 5.8e-14 81.3 49 83.7
Nn3g20693 Nelumbo nucifera HOM05D003897 ORTHO05D005095 5.8e-14 81.3 49 83.7
SalBow3G0479 Salvia bowleyana HOM05D003897 ORTHO05D005095 5.8e-14 81.3 49 83.7
DCAR_021998 Daucus carota HOM05D003897 ORTHO05D005095 7.6e-14 80.9 49 83.7
Thhalv10011661m.g Eutrema salsugineum HOM05D003897 ORTHO05D005095 7.6e-14 80.9 49 85.7
arahy.Tifrunner.gnm1.ann1.7FBU4T Arachis hypogaea HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
arahy.Tifrunner.gnm1.ann1.9R7E2G Arachis hypogaea HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
Cfa004562 Carpinus fangiana HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 81.6
CiPaw.06G170300 Carya illinoinensis HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 81.6
FvH4_2g05450 Fragaria vesca HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
FAN15G0415 Fragaria x ananassa HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
FAN20G3196 Fragaria x ananassa HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
FAN27G3036 Fragaria x ananassa HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
MD05G1087400 Malus domestica HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
MD10G1096200 Malus domestica HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
Prupe.8G132000 Prunus persica HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
Rhsim05G0087400 Rhododendron simsii HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 81.6
RhsimUnG0060800 Rhododendron simsii HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 81.6
RcHm_v2.0_Chr6g0255731 Rosa chinensis HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
TWI31G0147 Tripterygium wilfordii HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
unitig_26.g10235 Utricularia gibba HOM05D003897 ORTHO05D005095 9.9e-14 80.5 49 83.7
Eucgr.G01370 Eucalyptus grandis HOM05D003897 ORTHO05D005095 1.3e-13 80.1 49 81.6
QL11p034241 Quercus lobata HOM05D003897 ORTHO05D005095 1.3e-13 80.1 49 81.6
EL10Ac9g22306 Beta vulgaris HOM05D003897 ORTHO05D005095 1.7e-13 79.7 49 79.6
Atru.chr5.2594 Acer truncatum HOM05D003897 ORTHO05D005095 2.2e-13 79.3 49 81.6
Atru.chr9.455 Acer truncatum HOM05D003897 ORTHO05D005095 2.2e-13 79.3 49 81.6
AagrBONN_evm.TU.Sc2ySwM_117.2300 Anthoceros agrestis HOM05D003897 ORTHO05D005095 2.2e-13 79.3 49 79.6
Lalb_Chr09g0328701 Lupinus albus HOM05D003897 ORTHO05D005095 2.2e-13 79.3 49 83.7
AUR62010272 Chenopodium quinoa HOM05D003897 ORTHO05D005095 2.9e-13 79.0 49 79.6
AUR62013252 Chenopodium quinoa HOM05D003897 ORTHO05D005095 2.9e-13 79.0 49 79.6
AUR62026162 Chenopodium quinoa HOM05D003897 ORTHO05D005095 2.9e-13 79.0 49 79.6
Nn4g26537 Nelumbo nucifera HOM05D003897 ORTHO05D005095 2.9e-13 79.0 49 85.7
PSO063G1051 Papaver somniferum HOM05D003897 ORTHO05D005095 2.9e-13 79.0 49 79.6
PSO782G0863 Papaver somniferum HOM05D003897 ORTHO05D005095 2.9e-13 79.0 49 79.6
TAR628G0435 Trochodendron aralioides HOM05D003897 ORTHO05D005095 2.9e-13 79.0 49 79.6
ATR0782G093 Amborella trichopoda HOM05D003897 ORTHO05D005095 3.8e-13 78.6 49 79.6
AL3G47140 Arabidopsis lyrata HOM05D003897 ORTHO05D005095 3.8e-13 78.6 49 83.7
FAN24G2661 Fragaria x ananassa HOM05D003897 ORTHO05D005095 3.8e-13 78.6 49 81.6
CAN.G1372.13 Capsicum annuum HOM05D000052 ORTHO05D000046 4.9e-13 78.2 49 79.6
CBR_g49328 Chara braunii HOM05D003897 ORTHO05D005095 4.9e-13 78.2 49 83.7
DCAR_012421 Daucus carota HOM05D003897 ORTHO05D005095 4.9e-13 78.2 49 81.6
Lalb_Chr16g0386191 Lupinus albus HOM05D003897 ORTHO05D005095 4.9e-13 78.2 49 83.7
Os09g0110400 Oryza sativa ssp. japonica HOM05D003897 ORTHO05D005095 4.9e-13 78.2 49 81.6
Sed0005062 Sechium edule HOM05D003897 ORTHO05D005095 4.9e-13 78.2 49 81.6
Zm00001eb095630 Zea mays HOM05D003897 ORTHO05D005095 4.9e-13 78.2 49 81.6
CAN.G982.2 Capsicum annuum HOM05D003897 ORTHO05D005095 6.4e-13 77.8 49 81.6
SEGI_28988 Sequoiadendron giganteum HOM05D003897 ORTHO05D005095 6.4e-13 77.8 49 83.7
vmacro02010 Vaccinium macrocarpon HOM05D003897 ORTHO05D005095 8.4e-13 77.4 49 77.6
Mapoly0027s0025 Marchantia polymorpha HOM05D003897 ORTHO05D005095 1.1e-12 77.0 49 79.6
PSO675G0875 Papaver somniferum HOM05D003897 ORTHO05D005095 1.1e-12 77.0 49 75.5
AT2G15400 Arabidopsis thaliana HOM05D003897 ORTHO05D005095 3.2e-12 75.5 49 79.6
Lalb_Chr05g0219651 Lupinus albus HOM05D003897 ORTHO05D005095 3.2e-12 75.5 49 79.6
PSO541G0439 Papaver somniferum HOM05D003897 ORTHO05D005095 3.2e-12 75.5 49 73.5
SMO367G1036 Selaginella moellendorffii HOM05D003897 ORTHO05D005095 3.2e-12 75.5 49 77.6
Dinv15584 Davidia involucrata HOM05D000485 ORTHO05D000341 4.2e-12 75.1 49 81.6
Pp3c14_9440 Physcomitrium patens HOM05D003897 ORTHO05D005095 9.3e-12 73.9 49 73.5
CAN.G362.22 Capsicum annuum HOM05D003897 ORTHO05D005095 1.2e-11 73.6 49 79.6
CAN.G1774.1 Capsicum annuum HOM05D003897 ORTHO05D005095 2.1e-11 72.8 49 79.6
Pp3c5_19460 Physcomitrium patens HOM05D003897 ORTHO05D005095 2.7e-11 72.4 49 73.5
CAN.G107.20 Capsicum annuum HOM05D003897 ORTHO05D005095 7.9e-11 70.9 49 75.5
Haze_10156 Corylus avellana HOM05D003897 ORTHO05D005095 1.8e-10 69.7 41 82.9
RcHm_v2.0_Chr5g0063881 Rosa chinensis HOM05D003897 ORTHO05D005095 1.8e-10 69.7 49 67.3
BcaB07g31789 Brassica carinata HOM05D003897 ORTHO05D005095 3.0e-10 68.9 49 75.5
Cre10.g419750 Chlamydomonas reinhardtii HOM05D003897 ORTHO05D005095 8.7e-10 67.4 48 68.8
Mapoly0084s0037 Marchantia polymorpha HOM05D003897 ORTHO05D005095 1.5e-09 66.6 48 64.6
PRCOL_00001769 Prasinoderma coloniale HOM05D003897 ORTHO05D005095 1.5e-09 66.6 47 70.2
AUR62024543 Chenopodium quinoa HOM05D007817 ORTHO05D010493 2.5e-09 65.9 46 73.9
AagrBONN_evm.TU.Sc2ySwM_362.1866 Anthoceros agrestis HOM05D003897 ORTHO05D005095 3.3e-09 65.5 53 62.3
Haze_26903 Corylus avellana HOM05D003897 ORTHO05D005095 3.3e-09 65.5 47 70.2
MCO13G208 Micromonas commoda HOM05D003897 ORTHO05D005095 4.3e-09 65.1 49 71.4
Cfa022585 Carpinus fangiana HOM05D003897 ORTHO05D005095 5.6e-09 64.7 51 60.8
Lalb_Chr16g0386231 Lupinus albus HOM05D003897 ORTHO05D005095 2.1e-08 62.8 38 81.6
Dinv11428 Davidia involucrata HOM05D000807 ORTHO05D000662 2.8e-08 62.4 47 70.2
Lj9C321G13 Lonicera japonica HOM05D003897 ORTHO05D005095 4.8e-08 61.6 49 69.4
Nn8g38737 Nelumbo nucifera HOM05D003897 ORTHO05D005095 4.0e-07 58.5 43 67.4
MD01G1180900 Malus domestica HOM05D000069 ORTHO05D005129 9.0e-07 57.4 51 62.7
Dinv08459 Davidia involucrata HOM05D000012 ORTHO05D001936 1.2e-06 57.0 31 71.0
AUR62038769 Chenopodium quinoa HOM05D000033 ORTHO05D003265 3.4e-06 55.5 43 67.4


User provided reference genes

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