Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv01498 Davidia involucrata HOM05D000070 ORTHO05D184184 1.8e-81 305.8 154 100.0
Dinv36378 Davidia involucrata HOM05D000070 ORTHO05D005931 1.1e-38 163.7 104 84.6
Thecc.04G186200 Theobroma cacao HOM05D000070 ORTHO05D005931 8.4e-18 94.4 108 48.1
Peaxi162Scf00281g00017 Petunia axillaris HOM05D000070 ORTHO05D005931 1.9e-17 93.2 104 49.0
Actinidia35972 Actinidia chinensis HOM05D000070 ORTHO05D005931 2.1e-16 89.7 106 52.8
Cc10_g15760 Coffea canephora HOM05D000070 ORTHO05D005931 2.7e-16 89.4 105 48.6
COL.COLO4_20908 Corchorus olitorius HOM05D000070 ORTHO05D005931 2.7e-16 89.4 108 46.3
Actinidia34607 Actinidia chinensis HOM05D000070 ORTHO05D005931 3.5e-16 89.0 106 50.9
CSS0028544 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D005931 1.3e-15 87.0 104 51.9
Nitab4.5_0003300g0060 Nicotiana tabacum HOM05D000070 ORTHO05D005931 1.3e-15 87.0 96 52.1
GSVIVG01010750001 Vitis vinifera HOM05D000070 ORTHO05D005931 3.0e-15 85.9 101 52.5
Cfa015158 Carpinus fangiana HOM05D000070 ORTHO05D005931 5.1e-15 85.1 108 49.1
Sopen04g030020 Solanum pennellii HOM05D000070 ORTHO05D005931 6.6e-15 84.7 103 48.5
Gohir.D02G016900 Gossypium hirsutum HOM05D000070 ORTHO05D005931 8.7e-15 84.3 106 46.2
Gohir.D05G327400 Gossypium hirsutum HOM05D000070 ORTHO05D005931 8.7e-15 84.3 115 41.7
Solyc04g076180.4 Solanum lycopersicum HOM05D000070 ORTHO05D005931 8.7e-15 84.3 103 48.5
CiPaw.01G100800 Carya illinoinensis HOM05D000070 ORTHO05D005931 2.5e-14 82.8 107 48.6
Duzib151G0220 Durio zibethinus HOM05D000070 ORTHO05D005931 2.5e-14 82.8 111 44.1
CAN.G475.45 Capsicum annuum HOM05D000070 ORTHO05D005931 5.6e-14 81.6 99 52.5
Gorai.009G351300 Gossypium raimondii HOM05D000070 ORTHO05D005931 5.6e-14 81.6 115 40.9
Nitab4.5_0000131g0440 Nicotiana tabacum HOM05D000070 ORTHO05D005931 7.3e-14 81.3 93 50.5
Potri.017G030900 Populus trichocarpa HOM05D000070 ORTHO05D005931 7.3e-14 81.3 111 50.5
Potri.017G031400 Populus trichocarpa HOM05D000070 ORTHO05D005931 1.3e-13 80.5 109 45.9
Gohir.A02G015301 Gossypium hirsutum HOM05D000070 ORTHO05D005931 1.6e-13 80.1 106 45.3
Gorai.005G020700 Gossypium raimondii HOM05D000070 ORTHO05D005931 1.6e-13 80.1 106 44.3
Manes.04G042700 Manihot esculenta HOM05D000070 ORTHO05D005931 3.6e-13 79.0 109 47.7
QL01p053894 Quercus lobata HOM05D000070 ORTHO05D005931 3.6e-13 79.0 104 50.0
MD04G1007800 Malus domestica HOM05D000070 ORTHO05D005931 4.8e-13 78.6 108 41.7
MSTRG.22453 Avicennia marina HOM05D000070 ORTHO05D005931 6.2e-13 78.2 100 46.0
Glyma.11G128300 Glycine max HOM05D000070 ORTHO05D005931 6.2e-13 78.2 106 47.2
SGA_v2.0_scaffold118G32488 Striga asiatica HOM05D000070 ORTHO05D005931 6.2e-13 78.2 98 46.9
Gohir.A05G327300 Gossypium hirsutum HOM05D000070 ORTHO05D005931 1.8e-12 76.6 102 42.2
QL01p052795 Quercus lobata HOM05D000070 ORTHO05D005931 1.8e-12 76.6 104 50.0
SalBow7G2668 Salvia bowleyana HOM05D000070 ORTHO05D005931 2.4e-12 76.3 85 48.2
TWI15G0144 Tripterygium wilfordii HOM05D000070 ORTHO05D005931 2.4e-12 76.3 111 46.8
Eucgr.A00273 Eucalyptus grandis HOM05D000070 ORTHO05D005931 5.3e-12 75.1 111 42.3
QL10p048553 Quercus lobata HOM05D000070 ORTHO05D005931 5.3e-12 75.1 85 49.4
Sc25g0003000 Simmondsia chinensis HOM05D000070 ORTHO05D005931 5.3e-12 75.1 99 44.4
vmacro22679 Vaccinium macrocarpon HOM05D000070 ORTHO05D005931 9.0e-12 74.3 91 49.5
Rhsim09G0028300 Rhododendron simsii HOM05D000070 ORTHO05D005931 1.2e-11 73.9 105 45.7
Sabra07G0104200 Salix brachista HOM05D000070 ORTHO05D005931 1.5e-11 73.6 109 43.1
Cpa.g.sc9.267 Carica papaya HOM05D000070 ORTHO05D005931 2.0e-11 73.2 90 47.8
HanXRQChr03g0091981 Helianthus annuus HOM05D000070 ORTHO05D005931 2.0e-11 73.2 84 50.0
Glyma.12G052800 Glycine max HOM05D000070 ORTHO05D005931 2.6e-11 72.8 106 43.4
Psat7g213760 Pisum sativum HOM05D000070 ORTHO05D005931 2.6e-11 72.8 106 44.3
Ciclev10018558m.g Citrus clementina HOM05D000070 ORTHO05D005931 3.4e-11 72.4 111 41.4
Potri.007G127900 Populus trichocarpa HOM05D000070 ORTHO05D005931 3.4e-11 72.4 109 44.0
Lalb_Chr01g0003191 Lupinus albus HOM05D000070 ORTHO05D005931 5.8e-11 71.6 100 45.0
Phvul.011G054900 Phaseolus vulgaris HOM05D000070 ORTHO05D005931 7.6e-11 71.2 104 40.4
VMungo1127G1655 Vigna mungo HOM05D000070 ORTHO05D005931 7.6e-11 71.2 106 43.4
ECA240G1160 Erigeron canadensis HOM05D000070 ORTHO05D005931 1.3e-10 70.5 82 51.2
QL01p053252 Quercus lobata HOM05D000070 ORTHO05D005931 1.7e-10 70.1 94 50.0
Migut.C01257 Erythranthe guttata HOM05D000070 ORTHO05D005931 2.9e-10 69.3 91 42.9
TPR.G34234 Trifolium pratense HOM05D000070 ORTHO05D005931 4.9e-10 68.6 96 44.8
Sabra17G0020000 Salix brachista HOM05D000070 ORTHO05D005931 8.4e-10 67.8 80 48.8
arahy.Tifrunner.gnm1.ann1.B2FMMM Arachis hypogaea HOM05D000070 ORTHO05D005931 1.1e-09 67.4 85 44.7
CANSAT54G0506 Cannabis sativa HOM05D000070 ORTHO05D005931 1.1e-09 67.4 110 39.1
arahy.Tifrunner.gnm1.ann1.4K4GN8 Arachis hypogaea HOM05D000070 ORTHO05D005931 1.4e-09 67.0 85 44.7
Medtr4g067100 Medicago truncatula HOM05D000070 ORTHO05D005931 1.4e-09 67.0 96 43.8
FAN07G1072 Fragaria x ananassa HOM05D000961 ORTHO05D005931 1.9e-09 66.6 100 40.0
Lj3g0013218 Lotus japonicus HOM05D000070 ORTHO05D005931 2.4e-09 66.2 96 43.8
Ca_20782_v3 Cicer arietinum L. HOM05D000070 ORTHO05D005931 7.1e-09 64.7 96 42.7
MELO3C011649.2 Cucumis melo HOM05D000070 ORTHO05D005931 7.1e-09 64.7 91 44.0
Sed0006140 Sechium edule HOM05D000070 ORTHO05D005931 9.3e-09 64.3 98 41.8
PGR083G1687 Punica granatum HOM05D000070 ORTHO05D005931 1.6e-08 63.5 110 40.0
RcHm_v2.0_Chr4g0406861 Rosa chinensis HOM05D000070 ORTHO05D005931 2.1e-08 63.2 87 40.2
Haze_01497 Corylus avellana HOM05D000067 ORTHO05D005931 2.7e-08 62.8 99 42.4
Lsat_1_v5_gn_3_121920 Lactuca sativa HOM05D000070 ORTHO05D005931 6.0e-08 61.6 74 48.6
TAR362G0755 Trochodendron aralioides HOM05D000070 ORTHO05D005931 6.0e-08 61.6 72 51.4
C05p04270 Brassica napus HOM05D000070 ORTHO05D005931 7.9e-08 61.2 88 44.3
BolC5t29202H Brassica oleracea HOM05D000070 ORTHO05D005931 7.9e-08 61.2 88 44.3
unitig_0.g2133 Utricularia gibba HOM05D000070 ORTHO05D005931 7.9e-08 61.2 104 37.5
BraA09t42057Z Brassica rapa HOM05D000070 ORTHO05D005931 1.0e-07 60.8 87 43.7
MBI11_g13788_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D005931 1.0e-07 60.8 103 38.8
Sed0022342 Sechium edule HOM05D000070 ORTHO05D005931 1.0e-07 60.8 75 45.3
BraA10t42726Z Brassica rapa HOM05D000070 ORTHO05D005931 1.3e-07 60.5 85 43.5
Lj6C54T5 Lonicera japonica HOM05D000070 ORTHO05D005931 2.3e-07 59.7 123 42.3
Nn1g09748 Nelumbo nucifera HOM05D000070 ORTHO05D005931 2.3e-07 59.7 75 46.7
AL1G15870 Arabidopsis lyrata HOM05D000070 ORTHO05D005931 3.0e-07 59.3 92 42.4
A10p04610 Brassica napus HOM05D000070 ORTHO05D005931 3.0e-07 59.3 85 42.4
CsaV3_6G003880 Cucumis sativus L. HOM05D000070 ORTHO05D005931 6.7e-07 58.2 91 40.7
AUR62015394 Chenopodium quinoa HOM05D000070 ORTHO05D005931 1.1e-06 57.4 79 40.5
Aqoxy2G04141 Aquilegia oxysepala HOM05D000070 ORTHO05D005931 1.5e-06 57.0 69 44.9
Hund12010 Selenicereus undatus HOM05D000070 ORTHO05D005931 1.5e-06 57.0 78 38.5
CARHR005470 Cardamine hirsuta HOM05D000070 ORTHO05D005931 3.3e-06 55.8 89 41.6
Sp1g04750 Schrenkiella parvula HOM05D000070 ORTHO05D005931 5.6e-06 55.1 85 41.2
EL10Ac3g05926 Beta vulgaris HOM05D000070 ORTHO05D005931 7.4e-06 54.7 102 35.3
arahy.Tifrunner.gnm1.ann1.5J8MXK Arachis hypogaea HOM05D000070 ORTHO05D016631 9.6e-06 54.3 85 40.0


User provided reference genes

Program Settings