Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 3.2e-147 525.0 253 100.0
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 7.3e-144 513.8 251 98.8
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.2e-90 337.0 258 69.0
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 1.5e-85 320.1 258 63.2
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 5.9e-85 318.2 259 61.8
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.7e-84 316.6 259 60.6
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.9e-83 313.2 259 61.0
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.2e-83 312.0 259 60.6
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.2e-82 310.5 249 62.7
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.2e-82 310.5 259 60.2
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.7e-82 309.3 259 59.8
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 5.1e-81 305.1 259 59.5
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.0e-80 303.1 259 59.8
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.6e-80 302.8 259 60.6
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 2.2e-79 299.7 261 56.7
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 1.8e-78 296.6 262 59.9
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 3.1e-78 295.8 253 58.9
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 4.1e-78 295.4 260 57.7
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 5.3e-78 295.0 259 59.1
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 9.1e-78 294.3 251 58.2
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 1.2e-77 293.9 258 60.5
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 1.2e-77 293.9 259 58.3
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.5e-77 293.5 252 60.7
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 2.0e-77 293.1 259 56.8
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 3.4e-77 292.4 259 57.5
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 3.4e-77 292.4 259 57.5
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 1.0e-76 290.8 259 56.8
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.3e-76 290.4 259 59.1
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.7e-76 290.0 259 57.1
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.7e-76 290.0 259 56.8
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 2.9e-76 289.3 259 58.7
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 6.5e-76 288.1 252 59.1
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 6.5e-76 288.1 259 56.4
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 8.5e-76 287.7 259 56.4
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 8.5e-76 287.7 260 57.3
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.4e-75 287.0 260 55.8
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.4e-75 287.0 260 56.9
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.9e-75 286.6 252 57.9
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 2.5e-75 286.2 259 54.1
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 3.2e-75 285.8 260 58.5
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 3.2e-75 285.8 259 57.1
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 7.2e-75 284.6 260 55.4
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 7.2e-75 284.6 260 55.4
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 7.2e-75 284.6 253 55.7
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 9.4e-75 284.3 260 57.7
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 9.4e-75 284.3 253 59.3
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.2e-74 283.9 259 55.6
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.1e-74 283.1 260 56.9
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 2.7e-74 282.7 290 53.4
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 3.6e-74 282.3 259 56.4
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.4e-73 280.4 261 55.9
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 3.0e-73 279.3 265 55.1
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 3.0e-73 279.3 260 56.2
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 3.0e-73 279.3 253 54.5
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 8.8e-73 277.7 266 54.1
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 1.5e-72 276.9 262 53.8
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.5e-72 276.9 259 54.8
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 2.6e-72 276.2 260 55.4
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 3.3e-72 275.8 261 54.8
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 3.3e-72 275.8 260 55.8
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 4.4e-72 275.4 254 54.7
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 5.7e-72 275.0 251 55.0
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 1.7e-71 273.5 253 54.5
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 3.7e-71 272.3 260 54.6
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 4.8e-71 271.9 260 52.7
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 4.8e-71 271.9 260 52.7
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 6.3e-71 271.6 262 53.1
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 1.4e-70 270.4 257 52.9
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.8e-70 270.0 260 52.7
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 4.1e-70 268.9 261 52.9
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 7.0e-70 268.1 260 51.9
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.2e-69 267.3 261 52.1
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 2.0e-69 266.5 260 52.3
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 4.5e-69 265.4 253 55.7
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 5.9e-69 265.0 251 54.6
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 1.0e-68 264.2 262 53.1
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.7e-68 263.5 258 53.1
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 2.2e-68 263.1 219 61.2
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 3.8e-68 262.3 261 52.5
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 6.5e-68 261.5 273 51.3
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 1.1e-67 260.8 262 52.7
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 2.5e-67 259.6 262 51.5
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.2e-67 259.2 261 53.6
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 5.5e-67 258.5 265 52.5
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 5.5e-67 258.5 261 53.6
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.2e-66 257.3 259 51.7
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 1.2e-66 257.3 230 59.6
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 1.2e-66 257.3 272 51.1
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 1.6e-66 256.9 262 51.5
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.1e-66 256.5 253 52.2
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 2.7e-66 256.1 247 53.0
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 3.6e-66 255.8 257 53.3
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 6.1e-66 255.0 263 50.2
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 8.0e-66 254.6 262 51.5
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 8.0e-66 254.6 262 51.5
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.8e-65 253.4 261 52.5
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 3.0e-65 252.7 254 51.6
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 4.0e-65 252.3 261 50.6
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 5.2e-65 251.9 262 51.5
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 5.2e-65 251.9 262 51.5
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 6.7e-65 251.5 263 51.3
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 6.7e-65 251.5 262 51.1
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 2.6e-64 249.6 260 51.2
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 2.6e-64 249.6 263 50.2
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 3.3e-64 249.2 261 49.8
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 4.4e-64 248.8 263 49.8
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.3e-63 247.3 253 52.2
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 2.8e-63 246.1 271 48.7
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 3.7e-63 245.7 261 49.4
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 1.1e-62 244.2 261 49.0
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 1.1e-62 244.2 260 50.0
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.1e-62 244.2 256 50.4
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 2.4e-62 243.0 264 48.9
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 9.1e-62 241.1 259 49.4
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 9.1e-62 241.1 256 51.6
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.6e-61 240.4 260 49.6
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 2.0e-61 240.0 257 48.2
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 2.7e-61 239.6 253 48.2
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 3.5e-61 239.2 260 49.6
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 7.7e-61 238.0 261 49.0
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 1.0e-60 237.7 258 48.1
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.0e-60 237.7 164 70.7
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 1.0e-60 237.7 229 53.7
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 1.3e-60 237.3 257 48.2
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 3.8e-60 235.7 255 48.2
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 5.0e-60 235.3 259 47.1
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.5e-59 233.0 266 45.5
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 3.2e-59 232.6 259 49.0
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 9.4e-59 231.1 235 54.0
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.2e-58 230.7 252 46.8
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 1.2e-58 230.7 251 49.4
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.7e-58 229.6 257 48.2
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 3.6e-58 229.2 260 48.5
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 8.0e-58 228.0 260 48.5
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 1.4e-57 227.3 260 48.5
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 2.8e-55 219.5 177 64.4
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 6.3e-55 218.4 251 47.4
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 8.3e-55 218.0 250 48.0
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 1.4e-54 217.2 208 56.7
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 3.1e-54 216.1 160 63.8
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 9.1e-54 214.5 204 52.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.2e-53 214.2 244 48.4
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 3.5e-53 212.6 246 48.0
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 2.5e-51 206.5 157 64.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 9.5e-51 204.5 253 45.1
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.6e-48 196.4 131 71.0
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 4.9e-39 165.6 128 60.9
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 3.2e-38 162.9 226 36.7
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 2.0e-37 160.2 186 47.3
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 7.8e-37 158.3 223 39.5
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 3.3e-35 152.9 233 37.3
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.1e-33 147.9 99 69.7
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 8.9e-33 144.8 148 51.4
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.3e-31 141.0 227 35.7
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 1.7e-31 140.6 250 34.0
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 9.2e-22 108.2 119 52.9
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 5.1e-20 102.4 271 28.4
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.2e-18 95.5 110 45.5
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.2e-18 95.5 110 45.5
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-17 94.7 110 45.5
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 6.8e-17 92.0 88 50.0
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.4e-16 89.4 103 46.6
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.5e-08 64.3 110 37.3


User provided reference genes

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