Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031911 Daucus carota HOM05D005330 ORTHO05D006489 3.2e-72 275.0 143 100.0
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 2.6e-29 132.5 92 78.3
DCAR_022693 Daucus carota HOM05D005330 ORTHO05D006489 3.9e-25 118.6 84 77.4
Nitab4.5_0000189g0150 Nicotiana tabacum HOM05D005330 ORTHO05D006489 1.8e-22 109.8 84 66.7
Nitab4.5_0001199g0030 Nicotiana tabacum HOM05D005330 ORTHO05D006489 8.9e-22 107.5 84 64.3
PGSC0003DMG400014100 Solanum tuberosum HOM05D005330 ORTHO05D006489 1.2e-21 107.1 84 63.1
Sopen12g023810 Solanum pennellii HOM05D005330 ORTHO05D006489 4.4e-21 105.1 84 61.9
Dinv20432 Davidia involucrata HOM05D005330 ORTHO05D006489 4.9e-20 101.7 84 57.1
Solyc12g049330.2 Solanum lycopersicum HOM05D005330 ORTHO05D006489 6.4e-20 101.3 84 59.5
Oeu015485.2 Olea europaea HOM05D005330 ORTHO05D006489 7.0e-19 97.8 84 60.7
CAN.G1455.4 Capsicum annuum HOM05D005330 ORTHO05D006489 1.7e-17 93.2 84 53.6
Thecc.06G120800 Theobroma cacao HOM05D005330 ORTHO05D006489 3.0e-17 92.4 84 53.6
Gohir.D10G055300 Gossypium hirsutum HOM05D005330 ORTHO05D006489 3.9e-17 92.0 83 54.2
Gorai.011G059000 Gossypium raimondii HOM05D005330 ORTHO05D006489 3.9e-17 92.0 83 54.2
Cpa.g.sc25.125 Carica papaya HOM05D005330 ORTHO05D006489 1.9e-16 89.7 84 50.0
Gohir.A10G053500 Gossypium hirsutum HOM05D005330 ORTHO05D006489 1.9e-16 89.7 83 53.0
Peaxi162Scf00177g00417 Petunia axillaris HOM05D005330 ORTHO05D006489 1.9e-16 89.7 84 53.6
Hund18689 Selenicereus undatus HOM05D005330 ORTHO05D006489 7.3e-16 87.8 88 46.6
Manes.11G019800 Manihot esculenta HOM05D005330 ORTHO05D006489 9.5e-16 87.4 84 54.8
GSVIVG01016752001 Vitis vinifera HOM05D005330 ORTHO05D006489 1.6e-15 86.7 125 40.0
EL10Ac7g16412 Beta vulgaris HOM05D005330 ORTHO05D006489 4.7e-15 85.1 89 44.9
AUR62001479 Chenopodium quinoa HOM05D005330 ORTHO05D006489 1.4e-14 83.6 89 47.2
DCAR_016124 Daucus carota HOM05D005330 ORTHO05D006489 1.8e-14 83.2 124 45.2
Rhsim08G0239400 Rhododendron simsii HOM05D005330 ORTHO05D006489 1.8e-14 83.2 84 50.0
CiPaw.01G218300 Carya illinoinensis HOM05D005330 ORTHO05D006489 2.3e-14 82.8 84 48.8
Eucgr.F04419 Eucalyptus grandis HOM05D005330 ORTHO05D006489 2.3e-14 82.8 84 47.6
TWI31G1192 Tripterygium wilfordii HOM05D005330 ORTHO05D006489 4.0e-14 82.0 84 52.4
vmacro15037 Vaccinium macrocarpon HOM05D005330 ORTHO05D006489 4.0e-14 82.0 84 48.8
Atru.chr1.3994 Acer truncatum HOM05D005330 ORTHO05D006489 1.2e-13 80.5 85 47.1
Cc04_g01320 Coffea canephora HOM05D005330 ORTHO05D006489 1.2e-13 80.5 84 53.6
Phvul.010G129300 Phaseolus vulgaris HOM05D005330 ORTHO05D006489 3.4e-13 79.0 84 42.9
TWI79G1442 Tripterygium wilfordii HOM05D005330 ORTHO05D006489 7.5e-13 77.8 84 50.0
Aqoxy2G00145 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 9.9e-13 77.4 101 45.5
MD09G1182800 Malus domestica HOM05D005330 ORTHO05D006489 9.9e-13 77.4 84 44.0
Potri.003G065500 Populus trichocarpa HOM05D005330 ORTHO05D006489 1.3e-12 77.0 84 44.0
Glyma.16G008300 Glycine max HOM05D005330 ORTHO05D006489 2.2e-12 76.3 84 42.9
Ciclev10025803m.g Citrus clementina HOM05D005330 ORTHO05D006489 2.9e-12 75.9 84 47.6
COL.COLO4_30752 Corchorus olitorius HOM05D005330 ORTHO05D006489 2.9e-12 75.9 83 47.0
Ah.08g216810 Amaranthus hybridus HOM05D005330 ORTHO05D006489 6.4e-12 74.7 94 41.5
Lsat_1_v5_gn_5_136241 Lactuca sativa HOM05D005330 ORTHO05D006489 8.3e-12 74.3 85 45.9
Lj5A36G79 Lonicera japonica HOM05D005330 ORTHO05D006489 8.3e-12 74.3 85 51.8
CDE05G1829 Ceratophyllum demersum HOM05D005330 ORTHO05D006489 1.1e-11 73.9 84 44.0
SalBow6G0331 Salvia bowleyana HOM05D005330 ORTHO05D006489 1.4e-11 73.6 86 45.3
SalBow6G0719 Salvia bowleyana HOM05D005330 ORTHO05D006489 1.4e-11 73.6 86 45.3
VMungo0331G1542 Vigna mungo HOM05D005330 ORTHO05D006489 1.4e-11 73.6 84 40.5
SGA_v2.0_scaffold122G33335 Striga asiatica HOM05D005330 ORTHO05D006489 1.9e-11 73.2 82 48.8
Psat0s741g0240 Pisum sativum HOM05D005330 ORTHO05D006489 7.1e-11 71.2 83 43.4
MD09G1182600 Malus domestica HOM05D005330 ORTHO05D006489 9.2e-11 70.9 84 40.5
Actinidia32189 Actinidia chinensis HOM05D005330 ORTHO05D006489 1.2e-10 70.5 83 44.6
MD02G1089500 Malus domestica HOM05D005330 ORTHO05D006489 1.2e-10 70.5 84 44.0
PGR119G1300 Punica granatum HOM05D005330 ORTHO05D006489 1.2e-10 70.5 87 41.4
QL05p004250 Quercus lobata HOM05D005330 ORTHO05D006489 1.2e-10 70.5 84 41.7
Hma1.2p1_0686F.1_g203410 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 2.1e-10 69.7 83 42.2
Sabra03G0038500 Salix brachista HOM05D005330 ORTHO05D006489 2.7e-10 69.3 85 42.4
SGA_v2.0_scaffold71G23853 Striga asiatica HOM05D005330 ORTHO05D006489 2.7e-10 69.3 84 42.9
CSS0027574 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 1.0e-09 67.4 99 40.4
Nn6g34611 Nelumbo nucifera HOM05D005330 ORTHO05D006489 1.3e-09 67.0 84 44.0
SMO118G0169 Selaginella moellendorffii HOM05D005330 ORTHO05D006489 1.7e-09 66.6 120 31.7
BraA06t23266Z Brassica rapa HOM05D005330 ORTHO05D006489 2.3e-09 66.2 84 39.3
Lj3g0015373 Lotus japonicus HOM05D005330 ORTHO05D006489 2.3e-09 66.2 84 41.7
A08p01180 Brassica napus HOM05D005330 ORTHO05D006489 3.0e-09 65.9 85 44.7
Cfa003530 Carpinus fangiana HOM05D005330 ORTHO05D006489 3.0e-09 65.9 85 47.1
Hund05737 Selenicereus undatus HOM05D005330 ORTHO05D006489 3.0e-09 65.9 90 33.3
Actinidia21790 Actinidia chinensis HOM05D005330 ORTHO05D006489 3.9e-09 65.5 83 42.2
A06p00510 Brassica napus HOM05D005330 ORTHO05D006489 3.9e-09 65.5 84 39.3
Prupe.3G040200 Prunus persica HOM05D005330 ORTHO05D006489 3.9e-09 65.5 85 42.4
Potri.001G168700 Populus trichocarpa HOM05D005330 ORTHO05D006489 5.1e-09 65.1 84 36.9
C03p92030 Brassica napus HOM05D005330 ORTHO05D006489 6.6e-09 64.7 85 43.5
BraA08t32169Z Brassica rapa HOM05D005330 ORTHO05D006489 6.6e-09 64.7 85 43.5
Hma1.2p1_0291F.1_g115070 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 8.6e-09 64.3 84 40.5
Lalb_Chr04g0263541 Lupinus albus HOM05D005330 ORTHO05D006489 1.5e-08 63.5 84 41.7
TAR624G1001 Trochodendron aralioides HOM05D005330 ORTHO05D006489 1.5e-08 63.5 91 44.0
Haze_16035 Corylus avellana HOM05D005330 ORTHO05D006489 1.9e-08 63.2 85 42.4
PSO724G1224 Papaver somniferum HOM05D005330 ORTHO05D006489 1.9e-08 63.2 81 43.2
RcHm_v2.0_Chr2g0145651 Rosa chinensis HOM05D005330 ORTHO05D006489 1.9e-08 63.2 83 42.2
ATR0598G333 Amborella trichopoda HOM05D005330 ORTHO05D006489 2.5e-08 62.8 81 38.3
BcaC01g01438 Brassica carinata HOM05D005330 ORTHO05D006489 3.3e-08 62.4 84 40.5
BolC3t21521H Brassica oleracea HOM05D005330 ORTHO05D006489 3.3e-08 62.4 84 40.5
SEGI_21309 Sequoiadendron giganteum HOM05D005330 ORTHO05D006489 3.3e-08 62.4 88 39.8
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 3.3e-08 62.4 84 36.9
BcaC08g43595 Brassica carinata HOM05D005330 ORTHO05D006489 5.6e-08 61.6 84 35.7
C06p09930 Brassica napus HOM05D005330 ORTHO05D006489 5.6e-08 61.6 84 35.7
BolC6t36066H Brassica oleracea HOM05D005330 ORTHO05D006489 5.6e-08 61.6 84 35.7
PSO135G0621 Papaver somniferum HOM05D005330 ORTHO05D006489 5.6e-08 61.6 87 37.9
Ca_23387_v3 Cicer arietinum L. HOM05D005330 ORTHO05D006489 1.2e-07 60.5 81 35.8
BcaB04g17020 Brassica carinata HOM05D005330 ORTHO05D006489 1.6e-07 60.1 84 40.5
BcaB07g33256 Brassica carinata HOM05D005330 ORTHO05D006489 1.6e-07 60.1 84 36.9
CARHR044500 Cardamine hirsuta HOM05D005330 ORTHO05D006489 1.6e-07 60.1 87 39.1
AUR62009886 Chenopodium quinoa HOM05D005330 ORTHO05D006489 2.1e-07 59.7 92 37.0
Thhalv10011564m.g Eutrema salsugineum HOM05D005330 ORTHO05D006489 2.1e-07 59.7 84 42.9
PSO724G1321 Papaver somniferum HOM05D005330 ORTHO05D006489 2.1e-07 59.7 85 37.6
Sed0005660 Sechium edule HOM05D005330 ORTHO05D006489 2.1e-07 59.7 99 39.4
Glyma.18G149800 Glycine max HOM05D005330 ORTHO05D006489 2.8e-07 59.3 81 35.8
Atru.chr1.3993 Acer truncatum HOM05D005330 ORTHO05D006489 3.6e-07 58.9 85 42.4
ECA234G4612 Erigeron canadensis HOM05D005330 ORTHO05D006489 4.7e-07 58.5 84 34.5
Medtr8g020850 Medicago truncatula HOM05D005330 ORTHO05D006489 4.7e-07 58.5 81 34.6
Pp3c13_6970 Physcomitrium patens HOM05D005330 ORTHO05D006489 4.7e-07 58.5 83 42.2
Sp1g40600 Schrenkiella parvula HOM05D005330 ORTHO05D006489 4.7e-07 58.5 82 41.5
Aa31LG10G1260 Aethionema arabicum HOM05D005330 ORTHO05D006489 8.1e-07 57.8 81 40.7
PSO135G0922 Papaver somniferum HOM05D005330 ORTHO05D006489 1.8e-06 56.6 90 35.6
Sed0026793 Sechium edule HOM05D005330 ORTHO05D006489 1.8e-06 56.6 103 35.9
Sc10g0007910 Simmondsia chinensis HOM05D005330 ORTHO05D006489 1.8e-06 56.6 84 33.3
HanXRQChr12g0360301 Helianthus annuus HOM05D005330 ORTHO05D006489 5.2e-06 55.1 47 53.2
HanXRQChr12g0360331 Helianthus annuus HOM05D005330 ORTHO05D006489 5.2e-06 55.1 47 53.2
HanXRQChr12g0360351 Helianthus annuus HOM05D005330 ORTHO05D006489 5.2e-06 55.1 47 53.2
THA.LOC104810366 Tarenaya hassleriana HOM05D005330 ORTHO05D006489 5.2e-06 55.1 81 38.3
AagrBONN_evm.TU.Sc2ySwM_228.1646 Anthoceros agrestis HOM05D005330 ORTHO05D006489 6.8e-06 54.7 87 35.6
Os03g0177300 Oryza sativa ssp. japonica HOM05D005330 ORTHO05D006489 6.8e-06 54.7 84 35.7
MELO3C024354.2 Cucumis melo HOM05D005330 ORTHO05D006489 8.9e-06 54.3 40 57.5


User provided reference genes

Program Settings