Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.3e-96 356.3 168 100.0
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.1e-50 203.8 166 60.8
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 3.1e-50 202.2 157 62.4
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 5.3e-50 201.4 130 65.4
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 6.9e-50 201.1 153 60.1
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.2e-49 200.3 154 61.7
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 1.5e-49 199.9 156 60.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 3.4e-49 198.7 158 58.2
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 4.5e-49 198.4 158 57.6
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 5.9e-49 198.0 130 66.9
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 7.7e-49 197.6 155 61.3
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.3e-48 196.8 130 63.8
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.3e-48 196.8 154 58.4
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.3e-48 196.8 158 60.1
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.7e-48 196.4 130 63.1
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.7e-48 196.4 130 63.1
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.2e-48 196.1 158 57.6
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.9e-48 195.7 153 58.2
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 3.8e-48 195.3 126 65.9
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 3.8e-48 195.3 160 58.1
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 8.5e-48 194.1 156 57.1
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 2.5e-47 192.6 130 65.4
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.5e-47 192.6 156 56.4
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 4.2e-47 191.8 156 57.1
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.5e-47 191.4 166 54.8
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 7.2e-47 191.0 130 61.5
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 9.4e-47 190.7 159 55.3
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.2e-46 190.3 124 66.1
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 2.1e-46 189.5 158 55.1
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 3.6e-46 188.7 153 58.2
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 6.1e-46 188.0 154 57.8
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 6.1e-46 188.0 159 54.1
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.4e-45 186.8 171 51.5
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.8e-45 186.4 160 55.0
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 2.3e-45 186.0 160 55.0
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.0e-45 185.7 128 64.1
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 3.9e-45 185.3 153 56.2
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 5.1e-45 184.9 164 56.7
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 8.8e-45 184.1 172 50.6
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 8.8e-45 184.1 160 55.0
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 1.5e-44 183.3 128 63.3
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.5e-44 183.3 154 56.5
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.5e-44 183.3 154 56.5
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.0e-44 183.0 153 54.9
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.6e-44 182.6 117 69.2
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.7e-43 179.9 165 54.5
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.2e-43 179.5 153 54.9
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 2.8e-43 179.1 155 54.8
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.8e-43 178.3 118 62.7
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.1e-42 177.2 128 63.3
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.4e-42 176.8 164 52.4
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 1.8e-42 176.4 166 50.0
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.8e-42 176.4 156 56.4
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 1.8e-42 176.4 154 54.5
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 4.1e-42 175.3 156 55.8
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 5.3e-42 174.9 124 58.9
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 5.3e-42 174.9 162 54.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 5.3e-42 174.9 160 54.4
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.0e-42 174.5 108 69.4
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.0e-42 174.5 155 52.3
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 9.1e-42 174.1 155 52.9
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 9.1e-42 174.1 115 63.5
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.2e-41 173.7 124 58.1
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.2e-41 173.7 149 51.7
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.2e-41 173.7 158 51.9
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.2e-41 173.7 158 51.9
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 1.2e-41 173.7 160 51.2
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.2e-41 173.7 128 58.6
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.6e-41 173.3 157 54.1
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 5.9e-41 171.4 163 49.7
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 5.9e-41 171.4 155 53.5
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.0e-40 170.6 124 57.3
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.0e-40 170.6 156 52.6
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.7e-40 169.9 115 60.9
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.7e-40 169.9 118 63.6
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 2.2e-40 169.5 165 49.1
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 2.2e-40 169.5 154 51.3
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 2.9e-40 169.1 154 52.6
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.8e-40 168.7 127 56.7
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.8e-40 168.7 120 59.2
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.8e-40 168.7 109 64.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 5.0e-40 168.3 154 52.6
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 8.5e-40 167.5 115 61.7
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.1e-39 167.2 167 48.5
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.5e-39 166.8 133 55.6
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.9e-39 166.4 153 51.6
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 2.5e-39 166.0 132 55.3
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.2e-39 165.6 114 59.6
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 3.2e-39 165.6 134 53.7
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 3.2e-39 165.6 133 53.4
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 4.2e-39 165.2 152 50.7
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 4.2e-39 165.2 165 46.7
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 4.2e-39 165.2 166 48.2
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 5.5e-39 164.9 160 51.9
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 7.2e-39 164.5 153 51.0
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 7.2e-39 164.5 153 51.0
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 7.2e-39 164.5 161 47.8
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 9.4e-39 164.1 143 51.7
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-38 163.3 153 50.3
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-38 163.3 153 50.3
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-38 163.3 153 50.3
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.6e-38 163.3 153 50.3
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.6e-38 163.3 167 49.7
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 3.6e-38 162.2 108 61.1
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 4.7e-38 161.8 153 51.6
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 6.1e-38 161.4 161 47.8
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.0e-37 160.6 154 49.4
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 2.3e-37 159.5 133 51.1
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 3.0e-37 159.1 161 47.8
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.0e-37 158.7 127 52.0
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.0e-37 158.7 127 52.0
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.0e-37 158.7 117 56.4
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.0e-37 158.7 116 56.9
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 8.8e-37 157.5 116 56.9
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 1.1e-36 157.1 153 50.3
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 1.1e-36 157.1 153 50.3
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 1.1e-36 157.1 153 50.3
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.5e-36 156.8 162 48.8
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 2.6e-36 156.0 163 49.1
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 5.7e-36 154.8 128 53.1
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 6.3e-35 151.4 171 45.6
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 8.2e-35 151.0 163 47.9
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.8e-34 149.8 127 52.8
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 2.4e-34 149.4 115 54.8
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-34 149.4 108 58.3
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.4e-34 149.4 126 55.6
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 3.1e-34 149.1 154 48.7
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 7.0e-34 147.9 154 48.1
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 7.0e-34 147.9 117 52.1
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 9.1e-34 147.5 155 46.5
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-33 147.1 108 56.5
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.6e-33 146.7 113 59.3
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 2.0e-33 146.4 121 53.7
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.5e-33 145.6 108 57.4
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 3.8e-32 142.1 115 52.2
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 8.5e-32 141.0 137 46.7
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.5e-31 139.4 125 50.4
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 4.2e-31 138.7 108 55.6
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 5.5e-31 138.3 151 45.7
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 9.4e-31 137.5 143 45.5
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 4.7e-30 135.2 120 46.7
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 4.7e-30 135.2 97 59.8
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.0e-29 132.5 118 50.8
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 6.8e-29 131.3 123 49.6
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.8e-29 131.0 103 53.4
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.7e-27 126.7 96 57.3
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.7e-27 125.6 89 60.7
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.3e-27 124.4 98 52.0
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 2.0e-25 119.8 114 50.0
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 4.5e-25 118.6 106 48.1
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 7.7e-25 117.9 107 50.5
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 2.5e-23 112.8 107 46.7
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.2e-22 110.5 104 51.9
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 2.7e-22 109.4 116 44.8
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 6.1e-22 108.2 160 38.8
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-21 106.7 78 57.7
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 4.0e-21 105.5 153 35.9
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 4.0e-21 105.5 153 35.9
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.2e-20 104.0 75 60.0
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.5e-20 103.6 102 48.0
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 2.0e-20 103.2 109 43.1
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.2e-19 99.8 83 51.8
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 2.8e-19 99.4 153 34.0
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 3.5e-17 92.4 109 43.1
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 2.9e-16 89.4 110 40.0
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 3.3e-15 85.9 72 51.4
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.1e-14 81.6 62 56.5
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 4.4e-12 75.5 116 35.3
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.6e-09 67.0 66 50.0
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.7e-08 63.5 44 59.1
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.5e-07 59.7 42 57.1
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 8.0e-06 54.7 67 35.8


User provided reference genes

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