Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031197 Daucus carota HOM05D002721 ORTHO05D002919 3.7e-88 328.2 166 100.0
DCAR_019804 Daucus carota HOM05D002721 ORTHO05D002919 6.1e-83 310.8 166 95.2
DCAR_026695 Daucus carota HOM05D002721 ORTHO05D002919 3.3e-68 261.9 217 67.7
DCAR_018346 Daucus carota HOM05D002721 ORTHO05D002919 3.2e-47 192.2 102 94.1
DCAR_018347 Daucus carota HOM05D002721 ORTHO05D002919 6.0e-46 188.0 102 93.1
Lj6A772G33 Lonicera japonica HOM05D002721 ORTHO05D002919 1.1e-31 140.6 205 42.9
Dinv15572 Davidia involucrata HOM05D002721 ORTHO05D002919 8.4e-24 114.4 218 39.0
Cc11_g11350 Coffea canephora HOM05D002721 ORTHO05D002919 1.1e-23 114.0 205 38.5
Dinv33997 Davidia involucrata HOM05D002721 ORTHO05D002919 1.6e-22 110.2 212 40.1
Actinidia13414 Actinidia chinensis HOM05D002721 ORTHO05D002919 3.5e-22 109.0 210 40.0
Nitab4.5_0000259g0010 Nicotiana tabacum HOM05D002721 ORTHO05D002919 1.1e-20 104.0 208 37.0
CAN.G182.5 Capsicum annuum HOM05D002721 ORTHO05D002919 1.5e-20 103.6 197 37.6
vmacro10459 Vaccinium macrocarpon HOM05D002721 ORTHO05D002919 1.9e-20 103.2 195 39.0
ECA234G4745 Erigeron canadensis HOM05D002721 ORTHO05D002919 3.3e-20 102.4 187 35.8
Nitab4.5_0006377g0010 Nicotiana tabacum HOM05D002721 ORTHO05D002919 1.3e-19 100.5 208 36.1
Solyc05g010590.4 Solanum lycopersicum HOM05D002721 ORTHO05D002919 1.6e-19 100.1 197 37.1
PGSC0003DMG400019651 Solanum tuberosum HOM05D002721 ORTHO05D002919 4.8e-19 98.6 197 36.5
CSS0049515 Camellia sinensis var. sinensis HOM05D002721 ORTHO05D002919 6.3e-19 98.2 192 38.5
Sopen05g006410 Solanum pennellii HOM05D002721 ORTHO05D002919 6.3e-19 98.2 197 36.0
Rhsim09G0119600 Rhododendron simsii HOM05D002721 ORTHO05D002919 8.2e-19 97.8 216 37.0
TAR629G3028 Trochodendron aralioides HOM05D002721 ORTHO05D002919 1.4e-18 97.1 213 38.5
Peaxi162Scf00188g00812 Petunia axillaris HOM05D002721 ORTHO05D002919 7.7e-17 91.3 190 36.3
TAR371G1157 Trochodendron aralioides HOM05D002721 ORTHO05D002919 1.7e-16 90.1 194 38.1
Oeu054586.2 Olea europaea HOM05D002721 ORTHO05D002919 3.2e-15 85.9 192 31.2
CANSAT64G0632 Cannabis sativa HOM05D002721 ORTHO05D002919 4.2e-15 85.5 203 34.0
MBI15_g42002_MAGBIO Magnolia biondii HOM05D002721 ORTHO05D002919 2.1e-14 83.2 185 34.1
Hma1.2p1_1348F.1_g277310 Hydrangea macrophylla HOM05D002721 ORTHO05D002919 2.7e-14 82.8 218 32.1
Cfa007718 Carpinus fangiana HOM05D002721 ORTHO05D002919 6.1e-14 81.6 188 35.6
GSVIVG01036512001 Vitis vinifera HOM05D002721 ORTHO05D002919 6.1e-14 81.6 190 35.3
Oeu024143.1 Olea europaea HOM05D002721 ORTHO05D002919 1.0e-13 80.9 192 30.2
Potri.010G135900 Populus trichocarpa HOM05D002721 ORTHO05D002919 1.4e-13 80.5 215 34.9
Sabra10G0104500 Salix brachista HOM05D002721 ORTHO05D002919 1.8e-13 80.1 197 36.0
Haze_14356 Corylus avellana HOM05D002721 ORTHO05D002919 3.9e-13 79.0 215 33.0
Prupe.3G246700 Prunus persica HOM05D002721 ORTHO05D002919 5.1e-13 78.6 216 32.4
Atru.chr8.683 Acer truncatum HOM05D002721 ORTHO05D002919 6.7e-13 78.2 190 34.7
GSVIVG01010127001 Vitis vinifera HOM05D002721 ORTHO05D002919 6.7e-13 78.2 94 48.9
Thecc.02G319900 Theobroma cacao HOM05D002721 ORTHO05D002919 1.5e-12 77.0 213 31.9
Migut.L01147 Erythranthe guttata HOM05D002721 ORTHO05D002919 2.0e-12 76.6 201 33.3
AL2G27940 Arabidopsis lyrata HOM05D002721 ORTHO05D002919 3.3e-12 75.9 151 31.8
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 3.3e-12 75.9 190 34.7
ATR0691G037 Amborella trichopoda HOM05D002721 ORTHO05D002919 4.3e-12 75.5 196 33.7
QL03p073121 Quercus lobata HOM05D002721 ORTHO05D002919 4.3e-12 75.5 216 30.6
Aqoxy3G00575 Aquilegia oxysepala HOM05D002721 ORTHO05D002919 9.7e-12 74.3 184 35.3
CARHR061780 Cardamine hirsuta HOM05D002721 ORTHO05D002919 1.7e-11 73.6 126 34.1
Duzib248G1050 Durio zibethinus HOM05D002721 ORTHO05D002919 1.7e-11 73.6 218 31.2
MBI14_g08213_MAGBIO Magnolia biondii HOM05D002721 ORTHO05D002919 1.7e-11 73.6 187 33.2
AT1G68910 Arabidopsis thaliana HOM05D002721 ORTHO05D002919 2.2e-11 73.2 126 34.1
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 2.2e-11 73.2 138 35.5
TWI75G0211 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 2.8e-11 72.8 93 39.8
CSS0034394 Camellia sinensis var. sinensis HOM05D002721 ORTHO05D002919 3.7e-11 72.4 126 42.1
QL02p063553 Quercus lobata HOM05D002721 ORTHO05D002919 3.7e-11 72.4 208 32.2
Carub.0002s1555 Capsella rubella HOM05D002721 ORTHO05D002919 6.3e-11 71.6 156 31.4
C02p25600 Brassica napus HOM05D002721 ORTHO05D002919 1.1e-10 70.9 155 31.6
Dinv34891 Davidia involucrata HOM05D002721 ORTHO05D002919 1.1e-10 70.9 190 32.6
Gohir.A12G056901 Gossypium hirsutum HOM05D002721 ORTHO05D002919 1.1e-10 70.9 175 30.9
Sc10g0000490 Simmondsia chinensis HOM05D002721 ORTHO05D002919 1.4e-10 70.5 174 33.3
BolC2t08623H Brassica oleracea HOM05D002721 ORTHO05D002919 1.8e-10 70.1 155 31.6
Thhalv10018242m.g Eutrema salsugineum HOM05D002721 ORTHO05D002919 1.8e-10 70.1 139 31.7
ClCG01G007340 Citrullus lanatus HOM05D002721 ORTHO05D002919 2.4e-10 69.7 198 29.3
Rhsim08G0078700 Rhododendron simsii HOM05D002721 ORTHO05D002919 2.4e-10 69.7 127 38.6
Cpa.g.c34209.1 Carica papaya HOM05D002721 ORTHO05D002919 3.1e-10 69.3 187 33.2
Cfa008829 Carpinus fangiana HOM05D002721 ORTHO05D002919 4.1e-10 68.9 126 35.7
RcHm_v2.0_Chr2g0164391 Rosa chinensis HOM05D002721 ORTHO05D002919 4.1e-10 68.9 132 35.6
CANSAT64G2265 Cannabis sativa HOM05D002721 ORTHO05D002919 5.3e-10 68.6 113 41.6
Haze_11843 Corylus avellana HOM05D002721 ORTHO05D002919 5.3e-10 68.6 126 34.9
PSO063G3792 Papaver somniferum HOM05D002721 ORTHO05D002919 5.3e-10 68.6 202 32.7
Sabra04G0073100 Salix brachista HOM05D002721 ORTHO05D002919 5.3e-10 68.6 209 30.6
TWI32G1231 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 5.3e-10 68.6 197 32.5
A07p35320 Brassica napus HOM05D002721 ORTHO05D002919 9.1e-10 67.8 145 31.7
BraA02t06610Z Brassica rapa HOM05D002721 ORTHO05D002919 9.1e-10 67.8 154 31.2
PSO782G5409 Papaver somniferum HOM05D002721 ORTHO05D002919 9.1e-10 67.8 176 31.2
Thecc.04G110800 Theobroma cacao HOM05D002721 ORTHO05D002919 9.1e-10 67.8 185 31.4
Cc07_g04670 Coffea canephora HOM05D002721 ORTHO05D002919 1.2e-09 67.4 205 33.2
Potri.017G106400 Populus trichocarpa HOM05D002721 ORTHO05D002919 1.2e-09 67.4 178 33.1
Sed0019837 Sechium edule HOM05D002721 ORTHO05D002919 1.2e-09 67.4 94 40.4
BcaC08g46345 Brassica carinata HOM05D002721 ORTHO05D002919 1.5e-09 67.0 167 29.3
C06p40920 Brassica napus HOM05D002721 ORTHO05D002919 1.5e-09 67.0 167 29.3
BolC6t39341H Brassica oleracea HOM05D002721 ORTHO05D002919 1.5e-09 67.0 145 31.0
Gorai.008G059400 Gossypium raimondii HOM05D002721 ORTHO05D002919 1.5e-09 67.0 78 48.7
MD13G1054600 Malus domestica HOM05D002721 ORTHO05D002919 1.5e-09 67.0 183 31.7
Aa31sc12G170 Aethionema arabicum HOM05D002721 ORTHO05D002919 2.0e-09 66.6 148 30.4
A02p15490 Brassica napus HOM05D002721 ORTHO05D002919 2.0e-09 66.6 126 31.7
FvH4_4g28890 Fragaria vesca HOM05D002721 ORTHO05D002919 2.0e-09 66.6 205 28.3
FAN12G1937 Fragaria x ananassa HOM05D002721 ORTHO05D002919 2.0e-09 66.6 205 28.3
MD17G1067700 Malus domestica HOM05D002721 ORTHO05D002919 2.0e-09 66.6 82 48.8
BraA07t31125Z Brassica rapa HOM05D002721 ORTHO05D002919 2.6e-09 66.2 145 31.0
Duzib211G0355 Durio zibethinus HOM05D002721 ORTHO05D002919 2.6e-09 66.2 121 38.0
FAN17G0692 Fragaria x ananassa HOM05D002721 ORTHO05D002919 2.6e-09 66.2 205 28.3
FAN22G0742 Fragaria x ananassa HOM05D002721 ORTHO05D002919 2.6e-09 66.2 205 28.3
BcaB03g15864 Brassica carinata HOM05D002721 ORTHO05D002919 3.4e-09 65.9 127 33.1
COL.COLO4_25875 Corchorus olitorius HOM05D002721 ORTHO05D002919 3.4e-09 65.9 119 37.8
Gorai.013G098800 Gossypium raimondii HOM05D002721 ORTHO05D002919 3.4e-09 65.9 218 28.4
MD16G1053400 Malus domestica HOM05D002721 ORTHO05D002919 3.4e-09 65.9 212 28.8
Oeu062192.1 Olea europaea HOM05D002721 ORTHO05D002919 3.4e-09 65.9 76 48.7
PGSC0003DMG400026559 Solanum tuberosum HOM05D002721 ORTHO05D002919 4.5e-09 65.5 81 45.7
TPR.G2672 Trifolium pratense HOM05D002721 ORTHO05D002919 4.5e-09 65.5 204 29.9
Dinv33882 Davidia involucrata HOM05D002721 ORTHO05D002919 5.9e-09 65.1 190 31.6
FAN05G4529 Fragaria x ananassa HOM05D002721 ORTHO05D002919 5.9e-09 65.1 217 29.0
Gohir.D13G086700 Gossypium hirsutum HOM05D002721 ORTHO05D002919 5.9e-09 65.1 218 28.4
Nitab4.5_0003203g0020 Nicotiana tabacum HOM05D002721 ORTHO05D002919 5.9e-09 65.1 81 45.7
TWI34G0100 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 5.9e-09 65.1 185 32.4
CiPaw.03G080900 Carya illinoinensis HOM05D002721 ORTHO05D002919 7.7e-09 64.7 76 51.3
Hma1.2p1_0588F.1_g184620 Hydrangea macrophylla HOM05D002721 ORTHO05D002919 7.7e-09 64.7 102 43.1
arahy.Tifrunner.gnm1.ann1.EIW9IC Arachis hypogaea HOM05D002721 ORTHO05D002919 1.0e-08 64.3 208 29.8
MSTRG.18044 Avicennia marina HOM05D002721 ORTHO05D002919 1.0e-08 64.3 181 30.4
MSTRG.789 Avicennia marina HOM05D002721 ORTHO05D002919 1.0e-08 64.3 181 30.4
CAN.G93.45 Capsicum annuum HOM05D002721 ORTHO05D002919 1.0e-08 64.3 81 46.9
CsaV3_5G018810 Cucumis sativus L. HOM05D002721 ORTHO05D002919 1.0e-08 64.3 198 28.8
Lj2g0017371 Lotus japonicus HOM05D002721 ORTHO05D002919 1.0e-08 64.3 209 30.1
Manes.01G105100 Manihot esculenta HOM05D002721 ORTHO05D002919 1.0e-08 64.3 184 33.7
vmacro18116 Vaccinium macrocarpon HOM05D002721 ORTHO05D002919 1.0e-08 64.3 136 38.2
Aqoxy3G03780 Aquilegia oxysepala HOM05D002721 ORTHO05D002919 1.3e-08 63.9 216 31.5
Cpa.g.sc570.3 Carica papaya HOM05D002721 ORTHO05D002919 1.3e-08 63.9 190 28.4
Migut.H00573 Erythranthe guttata HOM05D002721 ORTHO05D002919 1.3e-08 63.9 96 45.8
Lj4P127T26 Lonicera japonica HOM05D002721 ORTHO05D002919 1.3e-08 63.9 186 31.7
MD09G1077300 Malus domestica HOM05D002721 ORTHO05D002919 1.3e-08 63.9 182 31.9
Nitab4.5_0002249g0070 Nicotiana tabacum HOM05D002721 ORTHO05D002919 1.3e-08 63.9 81 44.4
arahy.Tifrunner.gnm1.ann1.B0WRJ9 Arachis hypogaea HOM05D002721 ORTHO05D002919 1.7e-08 63.5 208 30.3
ClCG07G016160 Citrullus lanatus HOM05D002721 ORTHO05D002919 1.7e-08 63.5 92 40.2
Sed0004629 Sechium edule HOM05D002721 ORTHO05D002919 1.7e-08 63.5 195 29.7
MSTRG.2964 Avicennia marina HOM05D002721 ORTHO05D002919 2.2e-08 63.2 85 44.7
BcaB05g24431 Brassica carinata HOM05D002721 ORTHO05D002919 2.2e-08 63.2 126 34.1
Cpa.g.sc1414.3 Carica papaya HOM05D002721 ORTHO05D002919 2.2e-08 63.2 73 46.6
Sopen02g015870 Solanum pennellii HOM05D002721 ORTHO05D002919 2.2e-08 63.2 93 43.0
RcHm_v2.0_Chr6g0275231 Rosa chinensis HOM05D002721 ORTHO05D002919 2.9e-08 62.8 160 31.2
THA.LOC104805537 Tarenaya hassleriana HOM05D002721 ORTHO05D002919 2.9e-08 62.8 106 40.6
THA.LOC104823876 Tarenaya hassleriana HOM05D002721 ORTHO05D002919 2.9e-08 62.8 105 38.1
RcHm_v2.0_Chr4g0437011 Rosa chinensis HOM05D002721 ORTHO05D002919 3.8e-08 62.4 149 30.9
FvH4_6g46070 Fragaria vesca HOM05D002721 ORTHO05D002919 5.0e-08 62.0 120 32.5
FAN14G2371 Fragaria x ananassa HOM05D000717 ORTHO05D000555 5.0e-08 62.0 120 32.5
Lalb_Chr10g0099321 Lupinus albus HOM05D002721 ORTHO05D002919 5.0e-08 62.0 200 30.0
Sp5g24050 Schrenkiella parvula HOM05D002721 ORTHO05D002919 5.0e-08 62.0 157 29.3
MELO3C018912.2 Cucumis melo HOM05D002721 ORTHO05D002919 6.5e-08 61.6 92 38.0
Duzib251G0850 Durio zibethinus HOM05D002721 ORTHO05D002919 8.5e-08 61.2 226 30.5
PGR042G0929 Punica granatum HOM05D002721 ORTHO05D002919 8.5e-08 61.2 189 32.3
MELO3C005176.2 Cucumis melo HOM05D002721 ORTHO05D002919 1.1e-07 60.8 199 28.1
HPP92_027783 Vanilla planifolia HOM05D002721 ORTHO05D002919 1.1e-07 60.8 102 41.2
Ciclev10011306m.g Citrus clementina HOM05D002721 ORTHO05D002919 1.4e-07 60.5 209 33.5
DCAR_007541 Daucus carota HOM05D002721 ORTHO05D002919 1.4e-07 60.5 146 33.6
Oeu007095.1 Olea europaea HOM05D002721 ORTHO05D002919 1.4e-07 60.5 110 43.6
Peaxi162Scf00019g00315 Petunia axillaris HOM05D002721 ORTHO05D002919 1.4e-07 60.5 77 44.2
Eucgr.G02406 Eucalyptus grandis HOM05D002721 ORTHO05D002919 1.9e-07 60.1 74 45.9
FAN07G0888 Fragaria x ananassa HOM05D002721 ORTHO05D002919 1.9e-07 60.1 108 34.3
Aa31LG3G15810 Aethionema arabicum HOM05D002721 ORTHO05D002919 3.2e-07 59.3 93 45.2
Prupe.1G297300 Prunus persica HOM05D002721 ORTHO05D002919 3.2e-07 59.3 210 27.6
Sabra17G0089400 Salix brachista HOM05D002721 ORTHO05D002919 4.2e-07 58.9 207 32.4
arahy.Tifrunner.gnm1.ann1.47TAEF Arachis hypogaea HOM05D002721 ORTHO05D002919 7.2e-07 58.2 152 34.2
Lalb_Chr21g0318111 Lupinus albus HOM05D002721 ORTHO05D002919 7.2e-07 58.2 65 47.7
BcaB05g24432 Brassica carinata HOM05D002721 ORTHO05D002919 1.2e-06 57.4 85 36.5
COL.COLO4_27771 Corchorus olitorius HOM05D002721 ORTHO05D002919 1.6e-06 57.0 180 28.9
Ca_05183_v3 Cicer arietinum L. HOM05D002721 ORTHO05D002919 2.1e-06 56.6 223 26.5
SGA_v2.0_scaffold4G02351 Striga asiatica HOM05D002721 ORTHO05D002919 2.1e-06 56.6 83 41.0
Lj1g0012113 Lotus japonicus HOM05D002721 ORTHO05D002919 2.7e-06 56.2 77 42.9
ECA238G2894 Erigeron canadensis HOM05D002721 ORTHO05D002919 6.1e-06 55.1 155 30.3
Glyma.02G125400 Glycine max HOM05D002721 ORTHO05D002919 6.1e-06 55.1 221 27.6
Oeu033419.1 Olea europaea HOM05D002721 ORTHO05D002919 6.1e-06 55.1 110 40.9


User provided reference genes

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