Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 2.7e-269 931.4 471 100.0
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 7.4e-182 641.0 470 70.0
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 5.3e-180 634.8 466 69.5
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 5.8e-179 631.3 491 67.2
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 2.9e-178 629.0 473 67.9
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 1.1e-177 627.1 500 66.4
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.4e-177 626.7 481 67.6
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 3.2e-177 625.5 462 69.7
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 3.2e-177 625.5 434 72.6
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 9.3e-177 624.0 480 67.9
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 1.6e-176 623.2 500 66.0
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 2.7e-176 622.5 448 71.0
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.0e-175 620.5 462 69.3
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 3.0e-175 619.0 532 62.4
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.5e-174 616.7 484 66.9
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 1.5e-174 616.7 442 71.7
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 3.3e-174 615.5 472 69.1
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 4.3e-174 615.1 479 68.7
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 9.6e-174 614.0 441 70.7
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 6.2e-173 611.3 489 65.8
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.1e-172 610.5 479 66.8
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 1.8e-172 609.8 468 68.2
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 3.1e-172 609.0 458 69.4
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.5e-171 606.7 471 68.2
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.0e-171 606.3 481 67.8
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 2.6e-171 605.9 458 68.8
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 4.5e-171 605.1 481 66.3
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 1.7e-170 603.2 439 71.1
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.7e-170 603.2 488 65.2
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 2.9e-170 602.4 480 67.7
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 4.9e-170 601.7 434 70.3
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 8.4e-170 600.9 484 66.3
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 1.1e-169 600.5 457 68.7
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 2.5e-169 599.4 458 68.1
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 3.2e-169 599.0 442 69.5
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 5.5e-169 598.2 454 67.8
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.2e-168 597.0 460 67.0
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 2.1e-168 596.3 472 65.9
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 3.5e-168 595.5 436 70.2
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 4.6e-168 595.1 472 66.3
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.0e-167 594.0 481 66.3
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 1.8e-167 593.2 411 73.2
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 2.3e-167 592.8 439 69.7
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 6.7e-167 591.3 461 65.7
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 1.9e-166 589.7 469 66.5
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 1.9e-166 589.7 501 63.1
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 5.7e-166 588.2 414 71.5
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 5.7e-166 588.2 445 67.6
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 2.8e-165 585.9 463 67.2
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 4.1e-164 582.0 445 65.4
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 9.0e-164 580.9 396 74.2
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.5e-163 580.1 448 65.4
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 2.0e-163 579.7 448 65.2
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 2.0e-163 579.7 448 65.2
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.6e-163 579.3 451 69.2
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 1.7e-162 576.6 444 66.9
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 2.2e-162 576.2 433 69.1
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 2.2e-162 576.2 509 61.7
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 3.8e-162 575.5 464 64.9
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 3.8e-162 575.5 475 65.3
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 3.8e-162 575.5 452 66.4
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 5.0e-162 575.1 435 70.3
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.0e-162 575.1 435 70.1
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 6.5e-162 574.7 432 69.2
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 6.5e-162 574.7 421 69.4
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 8.5e-162 574.3 450 67.3
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.2e-161 572.4 462 64.3
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 4.2e-161 572.0 466 64.2
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 4.2e-161 572.0 374 78.1
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 5.5e-161 571.6 448 65.8
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.5e-161 571.6 435 69.9
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.7e-160 569.3 433 67.2
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.6e-160 568.5 436 65.6
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 7.9e-160 567.8 474 63.9
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 1.8e-159 566.6 415 70.6
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 3.0e-159 565.8 496 62.1
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 6.7e-159 564.7 451 65.9
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 6.7e-159 564.7 461 65.7
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 2.5e-158 562.8 423 67.4
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 1.0e-154 550.8 482 62.2
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.0e-154 550.8 429 66.9
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 2.1e-152 543.1 491 59.3
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 6.1e-152 541.6 531 57.3
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.4e-151 540.4 436 64.4
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.7e-149 533.5 448 61.6
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 2.2e-149 533.1 448 61.6
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 2.6e-147 526.2 426 63.8
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 3.8e-146 522.3 360 71.1
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.4e-143 513.8 407 64.9
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 2.0e-142 510.0 372 72.3
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 2.0e-139 500.0 387 64.1
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 5.0e-138 495.4 466 58.4
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 1.8e-135 486.9 398 64.6
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.6e-134 483.0 428 59.6
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 2.4e-132 476.5 423 59.3
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 8.5e-130 468.0 356 66.0
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.8e-125 452.2 433 56.1
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 8.6e-122 441.4 447 54.1
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 1.5e-121 440.7 308 70.1
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 4.0e-119 432.6 344 65.1
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 2.2e-117 426.8 352 61.9
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.8e-112 409.8 340 60.6
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 4.4e-110 402.5 349 61.0
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 4.1e-108 396.0 433 50.6
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 5.0e-106 389.0 505 46.9
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.4e-103 380.9 390 53.3
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 1.8e-103 380.6 389 54.0
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.6e-99 365.9 250 73.6
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 2.5e-97 360.1 394 52.8
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 5.6e-97 359.0 270 67.8
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 3.6e-96 356.3 343 59.2
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 6.4e-93 345.5 401 46.4
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 5.6e-81 305.8 334 52.4
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 5.3e-79 299.3 390 45.4
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 2.4e-71 273.9 352 46.3
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 2.7e-67 260.4 256 57.8
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.6e-62 243.8 280 51.1
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 2.1e-59 234.2 434 35.7
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 3.2e-52 210.3 438 33.3
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.4e-34 151.8 189 49.7
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.1e-33 148.7 134 61.2
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 5.7e-33 146.4 110 69.1
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 1.8e-31 141.4 127 60.6
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.7e-27 127.5 177 44.1
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 5.0e-21 106.7 62 71.0
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.1e-19 101.3 193 36.3
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.2e-16 91.3 89 53.9
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 6.3e-16 89.7 122 50.0
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.1e-15 87.4 96 49.0
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 2.9e-13 80.9 108 46.3
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 8.5e-13 79.3 78 61.5
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 7.2e-12 76.3 67 52.2
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.8e-08 64.3 102 43.1
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 7.0e-07 59.7 74 48.6
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 2.0e-06 58.2 53 52.8


User provided reference genes

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