Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 0.0e+00 1716.4 860 100.0
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 2.8e-248 862.4 827 60.2
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 8.9e-125 452.2 472 51.5
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 3.4e-124 450.3 490 49.0
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.1e-119 435.3 469 49.5
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 3.3e-119 433.7 466 50.2
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 9.5e-119 432.2 474 48.5
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.2e-116 425.2 467 48.6
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.3e-115 421.8 474 45.8
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.3e-115 421.8 468 48.3
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.9e-115 420.6 474 46.0
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 9.2e-114 415.6 468 47.0
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 2.7e-113 414.1 467 48.2
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 3.5e-113 413.7 428 51.9
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 6.6e-112 409.5 473 46.5
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.5e-111 408.3 467 48.0
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 2.8e-110 404.1 474 46.4
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.4e-108 397.1 474 46.4
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.2e-107 394.4 465 48.2
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.9e-106 391.3 437 47.8
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 2.4e-106 391.0 478 44.1
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 9.2e-106 389.0 429 48.3
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-105 388.3 429 47.8
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 6.0e-105 386.3 467 42.8
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 1.7e-104 384.8 429 47.3
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.0e-104 383.3 459 44.2
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.6e-104 382.9 429 47.1
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.5e-103 381.7 421 48.2
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.5e-103 381.7 429 47.3
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.5e-103 381.7 429 47.3
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 7.3e-103 379.4 415 50.1
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 9.5e-103 379.0 421 47.7
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 3.6e-102 377.1 418 47.4
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 3.6e-102 377.1 422 47.6
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 1.1e-101 375.6 434 47.2
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 2.3e-101 374.4 469 42.4
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 2.3e-101 374.4 471 42.3
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 3.1e-101 374.0 434 46.1
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 1.2e-100 372.1 407 48.2
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 2.0e-100 371.3 428 47.0
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 2.6e-100 370.9 427 46.6
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 4.4e-100 370.2 468 41.9
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 7.5e-100 369.4 408 51.5
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 2.2e-99 367.9 432 45.8
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 2.2e-99 367.9 471 42.7
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 4.9e-99 366.7 408 49.8
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 6.4e-99 366.3 403 49.6
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 1.4e-98 365.2 438 46.3
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 1.9e-98 364.8 429 46.4
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 5.4e-98 363.2 407 46.7
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 7.1e-98 362.8 432 47.0
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.6e-97 361.7 428 47.2
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.6e-97 361.7 430 46.5
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.6e-97 361.7 481 41.8
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.1e-97 361.3 422 47.4
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.7e-96 358.2 480 40.8
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 5.1e-96 356.7 470 41.7
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.5e-95 355.1 424 46.0
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 4.3e-95 353.6 466 42.5
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.1e-94 351.3 412 46.4
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 2.1e-94 351.3 454 44.9
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.4e-93 348.6 421 43.9
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 2.4e-93 347.8 429 43.6
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 4.0e-93 347.1 434 44.5
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 6.8e-93 346.3 434 44.5
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 1.2e-92 345.5 465 42.6
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.5e-92 345.1 423 45.9
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 2.0e-92 344.7 413 44.3
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.3e-91 342.0 433 44.1
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 6.4e-91 339.7 466 41.2
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.1e-90 339.0 463 42.5
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 2.4e-90 337.8 418 44.0
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.4e-90 336.7 466 40.8
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 5.4e-90 336.7 447 42.7
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 9.2e-90 335.9 467 40.0
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.6e-89 335.1 462 40.5
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.6e-89 335.1 466 41.8
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 2.7e-89 334.3 406 44.3
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.3e-88 332.0 519 38.3
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.7e-88 331.6 466 41.4
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.6e-86 325.1 430 44.4
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 4.7e-86 323.6 420 44.3
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 4.4e-84 317.0 477 37.5
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 3.8e-83 313.9 423 42.6
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 5.4e-82 310.1 444 41.2
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.6e-81 308.5 423 41.8
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 3.5e-81 307.4 435 38.6
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 6.0e-81 306.6 421 41.6
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 3.0e-80 304.3 442 42.3
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 8.7e-80 302.8 423 40.7
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 2.5e-79 301.2 446 41.0
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 5.6e-79 300.1 441 42.2
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.6e-78 298.5 311 51.1
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.4e-77 295.4 427 41.0
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 3.8e-75 287.3 423 40.9
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.1e-74 285.8 388 43.8
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 1.4e-74 285.4 409 39.4
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 6.0e-73 280.0 326 48.2
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 7.4e-71 273.1 480 35.0
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 9.6e-71 272.7 425 38.4
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 9.6e-71 272.7 425 38.4
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 9.6e-71 272.7 425 38.4
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.1e-70 271.6 478 33.9
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 1.4e-66 258.8 463 34.1
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.1e-65 255.0 422 37.0
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 6.0e-65 253.4 227 56.4
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.7e-57 228.0 490 31.6
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 2.7e-57 228.0 390 37.2
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 3.0e-56 224.6 291 40.5
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.9e-55 221.9 458 34.1
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.6e-54 218.8 246 47.2
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 2.2e-54 218.4 277 45.5
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 2.2e-54 218.4 294 41.5
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.3e-43 182.6 228 42.1
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 2.2e-35 155.2 506 26.5
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 6.5e-35 153.7 266 33.1
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 1.1e-34 152.9 323 31.6
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 2.5e-34 151.8 475 27.8
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 2.6e-28 131.7 276 31.9
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 2.7e-25 121.7 183 36.6
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 3.6e-25 121.3 200 29.0
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 4.0e-24 117.9 207 30.9
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 6.3e-22 110.5 196 33.2
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 1.2e-20 106.3 108 48.1
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 5.5e-18 97.4 296 28.4
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 3.6e-17 94.7 127 41.7
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 8.0e-17 93.6 96 45.8
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 3.0e-16 91.7 92 50.0
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.0e-16 91.3 189 33.3
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.8e-16 90.5 189 33.3
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 7.5e-15 87.0 99 40.4
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 7.0e-13 80.5 69 59.4
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.6e-11 73.9 84 45.2
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 2.5e-10 72.0 59 52.5
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.7e-09 67.8 110 35.5
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 7.5e-07 60.5 61 42.6
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 9.8e-07 60.1 148 31.1
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 1.3e-06 59.7 127 34.6
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-06 58.2 77 35.1
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 4.9e-06 57.8 77 33.8


User provided reference genes

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