Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 7.1e-47 190.3 97 100.0
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 4.0e-42 174.5 96 90.6
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 2.7e-38 161.8 96 82.3
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 6.0e-38 160.6 96 83.3
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 2.3e-37 158.7 95 82.1
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 5.1e-37 157.5 96 80.2
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 5.1e-37 157.5 96 84.4
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 6.6e-37 157.1 96 80.2
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 8.7e-37 156.8 96 80.2
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 8.7e-37 156.8 96 80.2
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 8.7e-37 156.8 96 80.2
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 8.7e-37 156.8 98 80.6
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 1.1e-36 156.4 96 80.2
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.1e-36 156.4 96 79.2
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 1.1e-36 156.4 96 78.1
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 2.5e-36 155.2 96 80.2
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 3.3e-36 154.8 94 81.9
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 3.3e-36 154.8 96 79.2
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 4.3e-36 154.5 96 79.2
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 4.3e-36 154.5 96 79.2
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 4.3e-36 154.5 96 78.1
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 4.3e-36 154.5 96 78.1
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 4.3e-36 154.5 96 78.1
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 5.6e-36 154.1 96 79.2
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 5.6e-36 154.1 96 79.2
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 7.3e-36 153.7 96 77.1
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 9.6e-36 153.3 96 79.2
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 9.6e-36 153.3 96 78.1
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 9.6e-36 153.3 96 78.1
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 1.3e-35 152.9 97 80.4
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 2.1e-35 152.1 96 77.1
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.8e-35 151.8 96 78.1
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 2.8e-35 151.8 96 78.1
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 3.6e-35 151.4 96 75.0
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 3.6e-35 151.4 96 76.0
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 6.2e-35 150.6 96 77.1
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 1.1e-34 149.8 96 75.0
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.4e-34 149.4 95 76.8
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 1.4e-34 149.4 96 76.0
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 1.8e-34 149.1 96 76.0
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 2.4e-34 148.7 97 77.3
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.1e-34 148.3 97 78.4
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 3.1e-34 148.3 97 78.4
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 4.0e-34 147.9 97 78.4
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 4.0e-34 147.9 97 76.3
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 4.0e-34 147.9 96 74.0
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 6.9e-34 147.1 96 76.0
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 6.9e-34 147.1 96 76.0
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 9.0e-34 146.7 97 78.4
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 9.0e-34 146.7 96 72.9
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.2e-33 146.4 100 77.0
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 1.2e-33 146.4 98 73.5
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 1.5e-33 146.0 92 77.2
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 2.0e-33 145.6 96 74.0
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 2.0e-33 145.6 92 77.2
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 2.0e-33 145.6 96 75.0
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.0e-33 145.6 90 77.8
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 2.6e-33 145.2 96 74.0
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 2.6e-33 145.2 94 76.6
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 3.4e-33 144.8 96 74.0
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 3.4e-33 144.8 96 74.0
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 3.4e-33 144.8 96 74.0
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 3.4e-33 144.8 103 71.8
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 4.5e-33 144.4 96 74.0
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 5.8e-33 144.1 92 76.1
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 5.8e-33 144.1 95 73.7
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 5.8e-33 144.1 95 73.7
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 5.8e-33 144.1 96 75.0
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 5.8e-33 144.1 95 73.7
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 7.6e-33 143.7 98 72.4
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 9.9e-33 143.3 97 75.3
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.3e-32 142.9 95 72.6
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.3e-32 142.9 96 76.0
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.3e-32 142.9 95 72.6
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 1.7e-32 142.5 96 72.9
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 2.2e-32 142.1 94 73.4
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 2.9e-32 141.7 97 72.2
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 2.9e-32 141.7 97 73.2
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 4.9e-32 141.0 97 74.2
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 4.9e-32 141.0 96 74.0
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 6.4e-32 140.6 96 75.0
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 6.4e-32 140.6 98 71.4
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 8.4e-32 140.2 93 74.2
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 8.4e-32 140.2 114 65.8
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 1.1e-31 139.8 92 73.9
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.9e-31 139.0 96 68.8
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 2.4e-31 138.7 73 90.4
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 2.4e-31 138.7 73 90.4
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 7.1e-31 137.1 99 70.7
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.2e-30 136.3 97 73.2
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 1.2e-30 136.3 93 69.9
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 1.2e-30 136.3 92 73.9
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 2.1e-30 135.6 97 73.2
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 2.7e-30 135.2 96 67.7
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 3.5e-30 134.8 96 68.8
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 4.6e-30 134.4 134 56.7
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 7.9e-30 133.7 93 71.0
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 1.0e-29 133.3 93 73.1
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 1.0e-29 133.3 111 64.9
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.3e-29 132.1 89 70.8
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 6.7e-29 130.6 99 65.7
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 1.9e-28 129.0 99 63.6
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 2.5e-28 128.6 94 68.1
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 2.5e-28 128.6 72 83.3
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 5.6e-28 127.5 99 68.7
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 2.1e-27 125.6 96 71.9
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 2.8e-27 125.2 96 64.6
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 3.7e-27 124.8 94 67.0
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 4.8e-27 124.4 97 64.9
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 8.1e-27 123.6 96 63.5
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 1.1e-26 123.2 93 65.6
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.4e-26 122.9 97 64.9
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 1.8e-26 122.5 93 65.6
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.4e-26 122.1 63 88.9
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 4.0e-26 121.3 77 75.3
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 5.3e-26 120.9 99 63.6
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 5.3e-26 120.9 99 63.6
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 5.3e-26 120.9 99 63.6
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 5.3e-26 120.9 76 72.4
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 6.9e-26 120.6 100 65.0
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 1.5e-25 119.4 72 73.6
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.5e-25 119.4 72 73.6
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 3.4e-25 118.2 96 60.4
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 3.4e-25 118.2 96 60.4
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 7.6e-25 117.1 99 61.6
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 9.9e-25 116.7 92 63.0
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 1.7e-24 115.9 76 64.5
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 3.8e-24 114.8 87 67.8
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 4.9e-24 114.4 78 64.1
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 8.4e-24 113.6 72 66.7
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 8.4e-24 113.6 62 83.9
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 3.2e-23 111.7 91 57.1
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 3.2e-23 111.7 76 63.2
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 2.1e-22 109.0 75 62.7
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 1.3e-21 106.3 59 83.1
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 1.8e-21 105.9 70 62.9
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 3.0e-21 105.1 129 48.1
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 3.9e-21 104.8 59 81.4
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 1.5e-20 102.8 96 59.4
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 3.3e-20 101.7 68 66.2
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.7e-19 98.2 67 74.6
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.7e-19 98.2 67 74.6
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 2.2e-16 89.0 74 63.5
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.1e-15 86.7 49 83.7
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 1.9e-15 85.9 81 56.8
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 1.6e-14 82.8 89 43.8
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 2.1e-14 82.4 45 84.4
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 1.3e-13 79.7 50 80.0
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 8.7e-13 77.0 72 45.8
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 1.6e-11 72.8 62 58.1
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 1.1e-10 70.1 41 78.0
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 1.8e-10 69.3 51 68.6
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 2.4e-10 68.9 43 76.7
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 9.0e-10 67.0 47 68.1
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.9e-09 64.3 65 53.8
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 3.8e-08 61.6 78 42.3
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 2.5e-07 58.9 64 39.1


User provided reference genes

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