Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 2117.8 1122 100.0
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1651.7 1156 76.7
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1579.3 1164 73.4
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1543.9 1156 73.0
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1523.1 1150 73.0
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1512.3 1151 72.7
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1502.6 1144 71.6
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1502.6 1144 70.4
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1496.9 1164 70.9
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1491.9 1137 70.4
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1481.5 1153 71.7
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1476.1 1125 69.9
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1474.9 1149 69.1
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1474.9 1152 70.6
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1469.5 1137 69.7
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1467.6 1136 70.6
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1465.3 1133 69.5
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1460.7 1145 70.0
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1458.7 1165 67.6
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1456.4 1148 68.8
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1456.0 1134 70.9
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1453.7 1151 68.7
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1453.7 1133 70.9
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1453.7 1147 69.9
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1452.6 1133 70.7
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1452.2 1127 69.7
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1447.2 1178 67.2
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1447.2 1165 67.6
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1446.4 1165 67.5
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1445.6 1137 70.1
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1444.1 1130 70.8
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1443.7 1178 66.7
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1442.6 1135 70.8
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1437.9 1142 67.9
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1437.2 1131 70.6
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1436.8 1174 68.5
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1436.8 1157 69.1
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1436.4 1150 68.3
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1435.6 1150 69.1
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1435.2 1129 70.6
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1435.2 1131 69.7
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1434.9 1158 68.7
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1434.5 1152 68.2
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1432.9 1150 69.3
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1430.2 1132 70.1
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1429.8 1150 68.3
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1429.5 1142 69.6
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1428.7 1156 69.1
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1428.7 1156 69.1
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1428.3 1152 69.0
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1427.5 1142 69.5
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1427.2 1144 69.3
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1426.8 1171 68.2
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1425.6 1152 68.4
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1424.1 1166 69.0
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1423.7 1152 68.1
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1407.5 1140 69.3
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1401.7 1198 66.4
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1400.2 1164 67.9
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1397.1 1125 68.7
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1393.3 1123 69.4
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1390.9 1151 66.6
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1369.0 1139 66.5
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1364.7 1145 67.4
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1364.4 1131 68.3
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1362.1 1111 67.9
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1361.7 1128 68.4
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1360.1 1152 66.3
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1355.1 1128 68.0
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1346.3 1170 64.9
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1344.7 1131 67.3
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1338.9 1153 66.6
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1335.9 1129 67.0
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1331.6 1145 64.3
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1330.9 1150 65.0
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1330.9 1150 65.2
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1328.5 1153 64.9
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1327.8 1155 64.8
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1327.8 1152 65.3
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1327.4 1151 65.0
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1323.9 1147 63.8
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1323.5 1126 65.6
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1320.8 1153 65.3
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1302.7 1151 64.9
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1291.9 1180 62.6
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1285.0 1207 61.3
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1214.5 894 73.7
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1182.2 936 70.8
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1165.6 1031 65.4
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1106.7 1233 51.9
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 0.0e+00 1092.0 1213 53.3
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1087.4 1222 53.2
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.9e-308 1062.8 909 64.5
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 5.1e-298 1028.1 729 72.0
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.9e-292 1009.6 1140 53.8
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.8e-264 915.2 741 66.1
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 3.1e-247 859.4 1393 40.8
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 1.0e-245 854.4 589 76.4
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.8e-245 852.4 589 78.4
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 9.8e-225 784.6 526 77.9
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 1.7e-224 783.9 526 77.8
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 3.9e-213 746.1 619 65.1
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 1.1e-210 738.0 524 73.5
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 3.6e-203 713.0 612 64.1
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 3.4e-193 679.9 584 64.9
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 1.6e-174 617.8 541 63.8
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.5e-172 611.3 1151 38.0
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 5.3e-170 602.8 563 62.3
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.4e-162 578.2 542 61.8
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 1.5e-140 505.0 539 55.1
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 3.3e-140 503.8 464 63.4
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 2.4e-138 497.7 392 66.6
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.1e-122 442.6 329 72.0
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 2.0e-116 424.9 331 68.3
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 7.3e-111 406.4 775 34.3
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 1.2e-108 399.1 471 53.3
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.1e-103 382.5 539 46.6
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.1e-101 375.9 354 60.5
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.3e-96 359.0 373 56.0
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 9.5e-95 352.8 363 55.1
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.7e-91 342.0 1099 28.9
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-86 325.9 220 78.2
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 4.9e-83 313.9 410 51.7
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 2.1e-78 298.5 253 58.1
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 1.6e-73 282.3 250 62.8
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.9e-71 275.4 217 67.7
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 7.9e-65 253.4 238 58.0
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 1.3e-64 252.7 149 87.2
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.8e-64 252.3 147 84.4
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 3.3e-63 248.1 171 71.3
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 2.4e-61 241.9 352 44.9
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 2.9e-59 235.0 343 44.9
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 1.6e-57 229.2 345 43.2
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 3.5e-57 228.0 345 42.9
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.9e-50 205.7 199 58.3
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.6e-49 202.6 106 95.3
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 2.3e-48 198.7 113 87.6
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 5.7e-47 194.1 111 87.4
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 1.3e-46 193.0 113 85.8
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 2.4e-45 188.7 113 84.1
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 3.1e-45 188.3 113 84.1
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 4.2e-42 177.9 109 83.5
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 4.6e-41 174.5 106 85.8
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.6e-41 174.5 573 30.2
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 1.8e-40 172.6 184 57.6
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 4.8e-38 164.5 99 84.8
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 6.3e-38 164.1 97 83.5
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.8e-37 162.5 89 91.0
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 6.1e-33 147.5 82 90.2
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 1.3e-30 139.8 125 59.2
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.0e-27 127.9 177 43.5
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 5.7e-23 114.4 72 79.2
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 2.8e-22 112.1 73 76.7
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 3.7e-22 111.7 75 74.7
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 8.2e-22 110.5 167 46.7
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 1.1e-21 110.2 75 73.3
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.2e-20 106.7 73 74.0
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 3.8e-19 101.7 91 64.8


User provided reference genes

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