Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 1.3e-246 855.9 431 100.0
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 1.2e-183 646.7 412 77.7
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 1.4e-182 643.3 396 79.0
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 9.7e-181 637.1 400 78.2
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 2.2e-180 636.0 400 77.8
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 8.5e-177 624.0 400 76.8
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 1.5e-176 623.2 400 76.8
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 1.5e-176 623.2 400 76.8
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.9e-176 622.9 407 76.4
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 4.2e-176 621.7 398 77.1
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.1e-175 619.4 416 74.8
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 4.0e-174 615.1 398 74.6
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 1.2e-173 613.6 412 74.0
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 2.0e-173 612.8 399 74.9
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 2.6e-173 612.5 398 74.4
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 5.7e-173 611.3 398 75.4
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 1.3e-172 610.1 398 73.9
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 6.3e-172 607.8 399 74.4
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 8.3e-172 607.4 401 74.8
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 4.1e-171 605.1 396 74.5
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 5.3e-171 604.7 398 73.6
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 7.0e-171 604.4 438 71.2
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 9.1e-171 604.0 399 73.4
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 3.5e-170 602.1 443 70.0
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 3.8e-169 598.6 400 74.2
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 8.5e-169 597.4 397 72.0
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 8.5e-169 597.4 399 73.7
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 1.1e-168 597.0 398 73.6
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 7.2e-168 594.3 397 72.3
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 9.4e-168 594.0 399 73.2
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 1.2e-167 593.6 402 73.6
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 1.2e-167 593.6 398 72.1
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 6.1e-167 591.3 398 72.1
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 6.1e-167 591.3 399 72.2
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 8.0e-167 590.9 398 71.9
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 8.0e-167 590.9 494 63.6
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 1.0e-166 590.5 397 71.5
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 2.3e-166 589.3 400 72.0
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 2.3e-166 589.3 400 73.8
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 4.0e-166 588.6 400 72.0
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 6.8e-166 587.8 401 70.1
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 8.8e-166 587.4 397 71.5
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 8.8e-166 587.4 397 71.3
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 8.8e-166 587.4 399 71.9
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.2e-165 587.0 399 72.2
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 2.0e-165 586.3 397 71.3
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 4.4e-165 585.1 398 70.9
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 5.7e-165 584.7 398 70.9
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 9.8e-165 583.9 398 71.4
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 1.7e-164 583.2 398 70.9
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 1.7e-164 583.2 397 70.3
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 2.2e-164 582.8 397 71.0
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.1e-163 580.5 394 71.3
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 4.1e-163 578.6 394 70.3
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 4.1e-163 578.6 400 70.8
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 4.1e-163 578.6 400 70.5
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 7.0e-163 577.8 399 70.4
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 1.2e-162 577.0 399 69.7
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 2.0e-162 576.2 405 70.4
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 2.3e-161 572.8 428 68.2
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 2.3e-161 572.8 399 68.9
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 3.8e-161 572.0 396 69.7
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 8.6e-161 570.9 399 68.7
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 1.1e-160 570.5 399 69.2
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 1.1e-160 570.5 400 71.0
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 1.9e-160 569.7 400 70.8
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 1.9e-160 569.7 399 68.7
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 9.5e-160 567.4 400 70.0
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 3.6e-159 565.5 399 68.9
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 4.7e-159 565.1 418 69.1
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 8.0e-159 564.3 407 71.3
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 2.6e-157 559.3 427 67.9
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 8.3e-156 554.3 417 65.7
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 1.1e-155 553.9 399 68.9
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 2.4e-155 552.7 434 65.4
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 4.5e-154 548.5 398 68.3
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 1.3e-153 547.0 399 64.9
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 2.9e-153 545.8 399 65.4
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.2e-148 529.6 406 68.7
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 1.3e-145 520.4 400 65.2
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 7.3e-144 514.6 390 67.7
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 7.3e-144 514.6 399 64.9
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.2e-143 513.8 335 73.7
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 7.5e-141 504.6 397 66.0
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.6e-138 496.9 462 58.2
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 5.6e-136 488.4 398 63.8
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 7.3e-136 488.0 502 53.6
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 1.6e-135 486.9 334 71.9
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.3e-132 477.2 370 64.3
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 6.4e-132 474.9 399 61.7
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 1.4e-131 473.8 399 60.7
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.0e-129 466.1 464 55.2
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 9.5e-128 461.1 400 59.5
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.2e-125 454.1 398 58.5
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 2.2e-124 449.9 310 72.6
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.4e-123 446.4 444 55.6
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 3.4e-117 426.0 406 50.7
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 5.1e-113 412.1 398 55.3
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 5.6e-112 408.7 343 63.8
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 9.6e-112 407.9 406 50.0
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 5.3e-110 402.1 275 71.3
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 1.3e-100 370.9 246 76.0
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 2.9e-100 369.8 403 45.9
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 5.3e-94 349.0 407 44.2
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 9.0e-94 348.2 272 63.2
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 1.7e-92 344.0 451 43.7
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 3.8e-92 342.8 246 69.5
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 4.6e-90 335.9 230 73.5
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 1.3e-89 334.3 407 41.5
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.2e-76 290.4 218 65.6
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 5.5e-75 285.8 256 59.4
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 2.7e-74 283.5 190 73.2
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 1.4e-70 271.2 203 66.0
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 2.2e-68 263.8 227 57.7
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 3.6e-66 256.5 235 57.4
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 1.3e-63 248.1 282 48.6
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 1.7e-60 237.7 171 66.1
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 3.5e-53 213.4 416 30.8
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 7.7e-53 212.2 419 32.5
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 8.3e-47 192.2 474 29.5
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.1e-46 191.8 126 70.6
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 3.5e-45 186.8 311 40.8
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.5e-40 171.4 433 28.4
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 6.2e-34 149.4 95 72.6
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 5.2e-33 146.4 111 68.5
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.2e-32 145.2 136 55.9
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.3e-31 141.7 99 60.6
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.3e-31 141.7 99 60.6
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.6e-29 133.3 117 58.1
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 1.7e-28 131.3 98 65.3
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.1e-25 120.6 95 55.8
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 7.8e-21 105.9 58 81.0
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.7e-20 104.8 70 74.3
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 3.3e-19 100.5 68 72.1
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 4.3e-19 100.1 68 72.1
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 9.5e-19 99.0 183 38.3
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 4.4e-16 90.1 87 52.9
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.4e-14 84.3 59 67.8
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 9.2e-14 82.4 52 73.1
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.0e-12 77.4 58 62.1
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.1e-10 71.2 51 70.6
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.6e-10 70.5 68 48.5
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 1.5e-08 65.1 57 57.9


User provided reference genes

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