Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1434.5 707 100.0
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1182.9 712 80.8
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1163.3 712 79.5
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1156.7 708 79.7
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1139.4 708 78.8
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1116.7 711 77.2
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1115.9 713 76.2
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 0.0e+00 1111.7 709 76.0
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1099.7 712 74.7
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1097.0 711 75.2
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1094.3 711 75.4
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1092.4 707 75.4
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 0.0e+00 1091.3 715 74.1
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1090.9 711 74.7
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1090.1 716 73.7
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1088.9 705 75.7
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1088.2 712 73.6
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1087.8 712 74.6
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1086.2 712 73.2
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1085.1 710 73.9
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1084.7 707 74.1
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1083.6 711 74.4
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1082.0 714 73.7
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1081.6 714 74.2
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 0.0e+00 1081.2 718 74.2
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 0.0e+00 1080.9 716 73.3
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 0.0e+00 1077.8 698 76.5
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1077.4 714 73.1
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 0.0e+00 1076.6 730 72.7
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 0.0e+00 1075.5 714 73.4
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 4.8e-312 1074.7 712 73.3
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 4.8e-312 1073.5 712 73.5
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 4.4e-311 1070.8 698 74.6
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 6.2e-310 1067.0 707 74.8
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 6.2e-310 1067.0 707 74.7
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 1.4e-309 1065.8 711 73.1
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 1.4e-309 1065.8 712 73.0
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 2.4e-309 1065.1 707 74.5
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.7e-307 1058.9 707 72.6
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 1.7e-307 1058.9 704 73.6
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.4e-306 1055.8 709 73.8
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 3.2e-306 1054.7 712 72.5
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 7.1e-306 1053.5 701 73.6
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 3.5e-305 1051.2 704 73.4
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.1e-303 1046.2 702 72.6
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 7.4e-303 1043.5 710 73.5
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 2.1e-302 1042.0 704 72.6
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 3.7e-302 1041.2 706 72.4
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 2.4e-301 1038.5 701 73.2
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 5.3e-301 1037.3 704 72.9
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.0e-300 1035.4 736 70.1
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 2.0e-300 1035.4 704 73.2
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 2.6e-300 1035.0 710 71.4
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 6.5e-299 1030.4 701 72.0
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 8.5e-299 1030.0 711 71.3
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 1.1e-298 1029.6 700 72.4
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 1.1e-298 1029.6 699 72.4
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 1.9e-298 1028.9 793 66.3
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 3.2e-298 1028.1 704 72.4
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 3.0e-296 1021.5 745 69.1
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 2.8e-294 1015.0 708 70.5
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 4.8e-294 1014.2 711 70.0
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 8.2e-294 1013.4 686 71.4
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 5.3e-293 1010.7 710 70.6
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 6.9e-293 1010.4 706 70.7
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 3.4e-292 1008.1 777 64.7
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 3.4e-292 1008.1 669 72.8
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 5.9e-292 1007.3 710 70.3
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 6.5e-291 1003.8 712 69.7
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 2.4e-285 985.3 707 68.7
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 5.3e-285 984.2 728 69.0
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 6.9e-285 983.8 758 65.4
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 2.0e-284 982.2 702 69.4
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 2.6e-284 981.9 708 68.1
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 4.5e-284 981.1 703 68.8
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 1.3e-283 979.5 691 69.6
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 1.7e-283 979.2 702 69.1
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 2.2e-283 978.8 702 69.1
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 5.0e-283 977.6 698 67.9
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 2.5e-282 975.3 698 68.9
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 5.5e-282 974.2 701 68.9
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 1.2e-281 973.0 697 68.4
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 2.3e-280 968.8 703 68.6
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 8.8e-280 966.8 702 68.5
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 1.8e-277 959.1 710 67.2
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 7.0e-277 957.2 703 68.3
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 9.1e-277 956.8 702 67.9
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 6.7e-272 940.6 712 66.2
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 5.7e-271 937.6 560 80.5
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 2.8e-270 935.3 712 66.7
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 2.7e-268 928.7 594 75.8
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 9.1e-261 903.7 699 66.7
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 1.0e-259 900.2 585 74.7
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 1.1e-250 870.2 672 64.1
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 1.9e-250 869.4 716 61.6
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 2.6e-247 859.0 704 64.2
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 2.7e-236 822.4 548 73.4
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 3.8e-222 775.4 523 72.3
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 5.2e-216 755.0 744 56.6
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 3.0e-211 739.2 691 53.5
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 4.2e-205 718.8 691 52.4
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 2.2e-182 643.3 694 48.8
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 5.0e-182 642.1 880 42.6
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 6.3e-177 625.2 434 70.5
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 6.3e-169 598.6 843 42.0
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 6.3e-169 598.6 682 48.1
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 3.0e-163 579.7 390 71.3
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 2.2e-161 573.5 491 58.5
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 4.0e-147 526.2 753 42.2
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 2.1e-140 503.8 744 41.5
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.0e-131 474.9 745 39.3
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 2.7e-127 460.3 333 71.2
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 2.3e-126 457.2 730 38.9
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 9.5e-125 451.8 816 37.6
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 9.5e-117 425.2 302 73.5
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 9.2e-104 382.1 352 58.0
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.3e-73 282.0 274 54.7
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.1e-71 274.6 201 67.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 2.7e-63 247.7 194 64.9
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 3.6e-55 220.7 132 81.8
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.0e-54 219.2 167 63.5
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 9.4e-40 169.5 114 71.1
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 3.0e-38 164.5 102 76.5
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 6.8e-38 163.3 178 55.6
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 1.4e-30 139.0 115 58.3
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 1.1e-24 119.4 118 50.8
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 4.2e-24 117.5 100 64.0
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 2.3e-22 111.7 148 44.6
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 4.9e-20 104.0 61 78.7
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.5e-16 92.4 62 66.1
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 3.1e-14 84.7 63 66.7
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 5.2e-14 84.0 59 67.8
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.7e-12 79.0 45 80.0
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 3.9e-09 67.8 58 55.2
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 8.6e-09 66.6 60 56.7
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.1e-08 66.2 69 49.3


User provided reference genes

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