Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_027717 Daucus carota HOM05D004154 ORTHO05D004988 5.2e-218 761.1 506 100.0
Cc08_g15820 Coffea canephora HOM05D004154 ORTHO05D004988 2.5e-119 433.3 531 59.1
SalBow1G2286 Salvia bowleyana HOM05D004154 ORTHO05D004988 1.6e-118 430.6 505 57.4
PGSC0003DMG400012298 Solanum tuberosum HOM05D004154 ORTHO05D004988 3.6e-118 429.5 499 62.5
SalBow1G6205 Salvia bowleyana HOM05D004154 ORTHO05D004988 1.1e-117 427.9 505 57.2
Sopen08g030360 Solanum pennellii HOM05D004154 ORTHO05D004988 5.8e-116 422.2 496 62.9
CiPaw.11G123500 Carya illinoinensis HOM05D004154 ORTHO05D004988 2.9e-115 419.9 498 62.4
Cfa012835 Carpinus fangiana HOM05D004154 ORTHO05D004988 1.1e-114 417.9 498 56.6
QL02p031322 Quercus lobata HOM05D004154 ORTHO05D004988 1.4e-114 417.5 504 62.1
Thecc.03G293700 Theobroma cacao HOM05D004154 ORTHO05D004988 7.1e-114 415.2 509 59.9
Duzib068G1416 Durio zibethinus HOM05D004154 ORTHO05D004988 2.3e-112 410.2 510 59.2
Atru.chr9.2030 Acer truncatum HOM05D004154 ORTHO05D004988 1.1e-111 407.9 510 60.0
Potri.001G093700 Populus trichocarpa HOM05D004154 ORTHO05D004988 9.5e-111 404.8 514 56.4
Potri.003G138000 Populus trichocarpa HOM05D004154 ORTHO05D004988 9.5e-111 404.8 517 58.6
Manes.02G012100 Manihot esculenta HOM05D004154 ORTHO05D004988 8.9e-109 398.3 512 61.7
Prupe.5G115800 Prunus persica HOM05D004154 ORTHO05D004988 8.9e-109 398.3 519 56.8
Sabra01G0069600 Salix brachista HOM05D004154 ORTHO05D004988 8.9e-109 398.3 514 57.0
Solyc08g082070.3 Solanum lycopersicum HOM05D004154 ORTHO05D004988 1.5e-108 397.5 496 60.5
MSTRG.25659 Avicennia marina HOM05D004154 ORTHO05D004988 5.8e-108 395.6 512 60.0
Glyma.08G021700 Glycine max HOM05D004154 ORTHO05D004988 7.6e-108 395.2 485 59.2
Lj4g0021447 Lotus japonicus HOM05D004154 ORTHO05D004988 7.6e-108 395.2 493 59.0
Cpa.g.sc122.41 Carica papaya HOM05D004154 ORTHO05D004988 1.1e-106 391.3 484 59.5
vmacro13908 Vaccinium macrocarpon HOM05D004154 ORTHO05D004988 6.0e-105 385.6 507 58.2
Lalb_Chr05g0224221 Lupinus albus HOM05D004154 ORTHO05D004988 1.3e-104 384.4 493 61.5
Phvul.002G296700 Phaseolus vulgaris HOM05D004154 ORTHO05D004988 6.6e-104 382.1 484 53.1
CSS0019694 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 1.5e-103 380.9 513 56.1
COL.COLO4_21713 Corchorus olitorius HOM05D004154 ORTHO05D004988 1.9e-103 380.6 500 55.2
MELO3C016306.2 Cucumis melo HOM05D004154 ORTHO05D004988 1.9e-103 380.6 501 59.9
Glyma.05G215500 Glycine max HOM05D004154 ORTHO05D004988 5.6e-103 379.0 487 55.6
PSO135G0371 Papaver somniferum HOM05D004154 ORTHO05D004988 9.6e-103 378.3 520 52.5
arahy.Tifrunner.gnm1.ann1.Y783I6 Arachis hypogaea HOM05D004154 ORTHO05D004988 2.8e-102 376.7 497 57.7
Ca_17492_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 2.8e-102 376.7 488 55.3
PGR042G2687 Punica granatum HOM05D004154 ORTHO05D004988 3.6e-102 376.3 490 56.3
arahy.Tifrunner.gnm1.ann1.1D56YB Arachis hypogaea HOM05D004154 ORTHO05D004988 4.7e-102 375.9 493 57.8
BcaNung01086 Brassica carinata HOM05D004154 ORTHO05D004988 4.7e-102 375.9 492 56.9
Oeu061093.1 Olea europaea HOM05D004154 ORTHO05D004988 6.2e-102 375.6 509 55.8
Eucgr.E00847 Eucalyptus grandis HOM05D004154 ORTHO05D004988 1.1e-101 374.8 524 54.6
CsaV3_4G006440 Cucumis sativus L. HOM05D004154 ORTHO05D004988 1.4e-101 374.4 487 61.0
Nitab4.5_0010205g0030 Nicotiana tabacum HOM05D004154 ORTHO05D004988 4.0e-101 372.9 501 58.7
VMungo0251G3674 Vigna mungo HOM05D004154 ORTHO05D004988 4.0e-101 372.9 487 54.8
Sed0017887 Sechium edule HOM05D004154 ORTHO05D004988 5.2e-101 372.5 499 55.5
HanXRQChr17g0535161 Helianthus annuus HOM05D004154 ORTHO05D004988 2.0e-100 370.5 500 55.0
SGA_v2.0_scaffold173G39085 Striga asiatica HOM05D004154 ORTHO05D004988 2.6e-100 370.2 497 57.5
PSO384G3063 Papaver somniferum HOM05D004154 ORTHO05D004988 3.4e-100 369.8 520 54.6
AUR62019814 Chenopodium quinoa HOM05D004154 ORTHO05D004988 4.4e-100 369.4 495 54.7
MD06G1103000 Malus domestica HOM05D004154 ORTHO05D004988 4.4e-100 369.4 518 53.5
TWI60G1238 Tripterygium wilfordii HOM05D004154 ORTHO05D004988 4.4e-100 369.4 511 54.0
Thhalv10025168m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 7.6e-100 368.6 494 57.5
A01p15110 Brassica napus HOM05D004154 ORTHO05D004988 1.7e-99 367.5 496 55.6
Nitab4.5_0000223g0250 Nicotiana tabacum HOM05D004154 ORTHO05D004988 1.7e-99 367.5 501 58.7
Nn3g19070 Nelumbo nucifera HOM05D004154 ORTHO05D004988 2.9e-99 366.7 564 49.1
BcaC09g50947 Brassica carinata HOM05D004154 ORTHO05D004988 3.8e-99 366.3 494 56.5
Ciclev10023918m.g Citrus clementina HOM05D004154 ORTHO05D004988 4.9e-99 365.9 489 61.1
ECA234G2690 Erigeron canadensis HOM05D004154 ORTHO05D004988 4.2e-98 362.8 508 51.6
THA.LOC104806434 Tarenaya hassleriana HOM05D004154 ORTHO05D004988 6.0e-97 359.0 491 57.0
C01p19010 Brassica napus HOM05D004154 ORTHO05D004988 7.8e-97 358.6 496 56.9
BolC1t01827H Brassica oleracea HOM05D004154 ORTHO05D004988 7.8e-97 358.6 496 56.9
Hund11402 Selenicereus undatus HOM05D004154 ORTHO05D004988 7.8e-97 358.6 504 54.0
AL7G29550 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 1.3e-96 357.8 494 56.9
Rhsim07G0083500 Rhododendron simsii HOM05D004154 ORTHO05D004988 1.3e-96 357.8 509 48.3
Sp7g21760 Schrenkiella parvula HOM05D004154 ORTHO05D004988 1.3e-96 357.8 493 55.4
AT4G23800 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 1.7e-96 357.5 469 58.0
Medtr8g099305 Medicago truncatula HOM05D004154 ORTHO05D004988 2.3e-96 357.1 494 53.8
Carub.0007s1732 Capsella rubella HOM05D004154 ORTHO05D004988 3.0e-96 356.7 465 57.6
Aqoxy7G00145 Aquilegia oxysepala HOM05D004154 ORTHO05D004988 1.9e-95 354.0 504 51.8
BraA01t01449Z Brassica rapa HOM05D004154 ORTHO05D004988 3.3e-95 353.2 497 54.5
Gohir.D11G023700 Gossypium hirsutum HOM05D004154 ORTHO05D004988 4.3e-95 352.8 515 52.8
Gorai.007G025500 Gossypium raimondii HOM05D004154 ORTHO05D004988 7.3e-95 352.1 515 52.8
Migut.A00676 Erythranthe guttata HOM05D004154 ORTHO05D004988 1.3e-94 351.3 510 54.9
CARHR231190 Cardamine hirsuta HOM05D004154 ORTHO05D004988 1.4e-93 347.8 495 53.1
TPR.G3381 Trifolium pratense HOM05D004154 ORTHO05D004988 1.4e-93 347.8 495 56.6
MBI07_g24338_MAGBIO Magnolia biondii HOM05D004154 ORTHO05D004988 4.0e-93 346.3 517 51.3
AUR62010814 Chenopodium quinoa HOM05D004154 ORTHO05D004988 6.9e-93 345.5 483 51.1
Gohir.A11G024000 Gossypium hirsutum HOM05D004154 ORTHO05D004988 6.9e-93 345.5 516 51.4
Duzib205G2047 Durio zibethinus HOM05D004154 ORTHO05D004988 9.0e-93 345.1 485 56.3
Dinv38854 Davidia involucrata HOM05D000337 ORTHO05D000297 2.6e-92 343.6 351 60.4
Sp6g06370 Schrenkiella parvula HOM05D004154 ORTHO05D004988 3.4e-92 343.2 486 59.1
Zm00001eb238060 Zea mays HOM05D004154 ORTHO05D004988 4.4e-92 342.8 495 54.7
Thhalv10028648m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 1.7e-91 340.9 419 61.1
GSVIVG01019504001 Vitis vinifera HOM05D004154 ORTHO05D004988 7.1e-90 335.5 390 56.9
Atru.chr2.763 Acer truncatum HOM05D004154 ORTHO05D004988 2.1e-89 334.0 378 59.8
AL6G45220 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 3.5e-89 333.2 410 62.9
CARHR255520 Cardamine hirsuta HOM05D004154 ORTHO05D004988 7.9e-89 332.0 486 56.2
AT4G11080 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 1.7e-88 330.9 486 56.4
A09p28160 Brassica napus HOM05D004154 ORTHO05D004988 1.5e-87 327.8 490 55.5
FAN08G1247 Fragaria x ananassa HOM05D004154 ORTHO05D004988 1.5e-87 327.8 514 54.3
RcHm_v2.0_Chr7g0195371 Rosa chinensis HOM05D004154 ORTHO05D004988 3.3e-87 326.6 513 54.4
Carub.0006s2985 Capsella rubella HOM05D004154 ORTHO05D004988 4.3e-87 326.2 485 57.3
BraA09t38379Z Brassica rapa HOM05D004154 ORTHO05D004988 5.6e-87 325.9 490 55.3
CDE03G0409 Ceratophyllum demersum HOM05D004154 ORTHO05D004988 5.6e-87 325.9 494 51.6
unitig_32.g11609 Utricularia gibba HOM05D004154 ORTHO05D004988 2.1e-86 323.9 508 55.3
TAR374G1070 Trochodendron aralioides HOM05D004154 ORTHO05D004988 4.8e-86 322.8 375 57.3
Aa31LG5G23780 Aethionema arabicum HOM05D004154 ORTHO05D004988 1.1e-85 321.6 485 56.1
BcaC04g21100 Brassica carinata HOM05D004154 ORTHO05D004988 4.5e-84 316.2 486 55.3
C09p35690 Brassica napus HOM05D004154 ORTHO05D004988 4.5e-84 316.2 486 55.3
BolC9t56405H Brassica oleracea HOM05D004154 ORTHO05D004988 4.5e-84 316.2 486 55.3
CANSAT21G2399 Cannabis sativa HOM05D004154 ORTHO05D004988 5.8e-84 315.8 377 56.8
Haze_08653 Corylus avellana HOM05D004154 ORTHO05D004988 9.9e-84 315.1 353 62.3
Lsat_1_v5_gn_3_10260 Lactuca sativa HOM05D004154 ORTHO05D004988 1.9e-82 310.8 514 51.4
Atru.chr9.2037 Acer truncatum HOM05D004154 ORTHO05D001448 1.3e-80 304.7 354 59.0
Aa31LG6G7020 Aethionema arabicum HOM05D004154 ORTHO05D004988 3.0e-80 303.5 455 54.9
FvH4_5g04120 Fragaria vesca HOM05D004154 ORTHO05D004988 5.6e-79 299.3 480 55.0
EL10Ac5g12892 Beta vulgaris HOM05D004154 ORTHO05D004988 7.4e-79 298.9 502 44.4
Lj8A210T88 Lonicera japonica HOM05D004154 ORTHO05D004988 1.6e-78 297.7 539 49.4
FAN18G0035 Fragaria x ananassa HOM05D004154 ORTHO05D004988 2.0e-76 290.8 442 58.1
CAN.G532.100 Capsicum annuum HOM05D004154 ORTHO05D004988 3.8e-75 286.6 318 58.5
Peaxi162Scf00074g01143 Petunia axillaris HOM05D004154 ORTHO05D004988 1.4e-74 284.6 500 48.6
Psat7g026240 Pisum sativum HOM05D004154 ORTHO05D004988 7.9e-73 278.9 487 46.0
FAN18G2617 Fragaria x ananassa HOM05D004154 ORTHO05D004988 4.1e-69 266.5 443 56.9
FAN04G1279 Fragaria x ananassa HOM05D004154 ORTHO05D004988 5.0e-67 259.6 443 54.0
FAN04G2754 Fragaria x ananassa HOM05D004154 ORTHO05D004988 5.0e-67 259.6 443 54.0
SEGI_25080 Sequoiadendron giganteum HOM05D004154 ORTHO05D004988 1.1e-66 258.5 375 50.9
FAN13G2696 Fragaria x ananassa HOM05D004154 ORTHO05D004988 7.2e-66 255.8 438 57.3
CDE04G1588 Ceratophyllum demersum HOM05D004154 ORTHO05D004988 6.7e-64 249.2 357 52.4
ATR1100G049 Amborella trichopoda HOM05D004154 ORTHO05D004988 1.5e-63 248.1 367 51.8
Pp3c11_8530 Physcomitrium patens HOM05D004154 ORTHO05D004988 3.4e-60 236.9 501 39.5
MD14G1121900 Malus domestica HOM05D004154 ORTHO05D004988 7.7e-60 235.7 314 46.8
Sc07g0009970 Simmondsia chinensis HOM05D004154 ORTHO05D004988 1.0e-59 235.3 508 49.2
ClCG07G014910 Citrullus lanatus HOM05D004154 ORTHO05D004988 2.5e-58 230.7 323 53.3
Pp3c7_20570 Physcomitrium patens HOM05D004154 ORTHO05D004988 5.9e-52 209.5 426 35.7
SEGI_34551 Sequoiadendron giganteum HOM05D004154 ORTHO05D004988 2.2e-46 191.0 418 36.4
Mapoly0026s0138 Marchantia polymorpha HOM05D004154 ORTHO05D004988 1.2e-44 185.3 470 36.4
Sabra13G0046900 Salix brachista HOM05D004154 ORTHO05D004988 3.8e-43 180.3 170 66.5
Glyma.01G060600 Glycine max HOM05D004154 ORTHO05D004988 3.2e-42 177.2 180 58.9
Sabra05G0040500 Salix brachista HOM05D004154 ORTHO05D004988 5.5e-42 176.4 167 65.3
SMO367G1063 Selaginella moellendorffii HOM05D004154 ORTHO05D004988 1.2e-41 175.3 433 37.9
Sabra17G0001600 Salix brachista HOM05D004154 ORTHO05D004988 2.7e-41 174.1 168 66.1
SabraUnG0000800 Salix brachista HOM05D004154 ORTHO05D004988 8.8e-40 169.1 154 69.5
Manes.17G117281 Manihot esculenta HOM05D004154 ORTHO05D004988 1.3e-38 165.2 417 47.2
PGSC0003DMG400012086 Solanum tuberosum HOM05D004154 ORTHO05D004988 1.0e-35 155.6 272 40.8
Sabra10G0054600 Salix brachista HOM05D004154 ORTHO05D004988 7.2e-34 149.4 150 64.7
Sabra11G0120200 Salix brachista HOM05D004154 ORTHO05D004988 1.6e-33 148.3 146 65.8
AagrBONN_evm.TU.Sc2ySwM_117.3685 Anthoceros agrestis HOM05D004154 ORTHO05D004988 1.4e-32 145.2 303 35.0
Sabra19G0042900 Salix brachista HOM05D004154 ORTHO05D004988 5.9e-28 129.8 169 47.9
CSS0031879 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 1.3e-27 128.6 176 45.5
Os02g0258200 Oryza sativa ssp. japonica HOM05D004154 ORTHO05D004988 3.2e-26 124.0 197 57.4
ATR0594G018 Amborella trichopoda HOM05D004154 ORTHO05D004988 9.5e-26 122.5 149 53.0
CSS0023347 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 3.4e-23 114.0 169 52.1
CSS0027886 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 3.4e-23 114.0 172 52.3
PSO063G0915 Papaver somniferum HOM05D004154 ORTHO05D004988 4.4e-23 113.6 172 40.1
PSO729G0146 Papaver somniferum HOM05D004154 ORTHO05D004988 1.1e-21 109.0 135 49.6
Duzib183G0002 Durio zibethinus HOM05D004154 ORTHO05D004988 1.8e-21 108.2 154 68.2
Sed0012262 Sechium edule HOM05D004154 ORTHO05D004988 1.6e-20 105.1 377 35.8
Os02g0258250 Oryza sativa ssp. japonica HOM05D004154 ORTHO05D004988 1.5e-18 98.6 120 50.0
SEGI_07912 Sequoiadendron giganteum HOM05D004154 ORTHO05D012852 8.9e-16 89.4 355 31.8
BcaB01g01584 Brassica carinata HOM05D004154 ORTHO05D004988 1.2e-15 89.0 150 50.7
CSS0026293 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 1.8e-13 81.6 176 43.2
CSS0011943 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 4.6e-12 77.0 146 41.8
CSS0017125 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 4.6e-12 77.0 146 41.1
Ca_12802_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 2.1e-09 68.2 160 45.0
Hund19700 Selenicereus undatus HOM05D000727 ORTHO05D000541 5.2e-08 63.5 90 47.8
PSO339G6280 Papaver somniferum HOM05D004154 ORTHO05D004988 6.8e-08 63.2 71 52.1
Actinidia12320 Actinidia chinensis HOM05D004154 ORTHO05D004988 1.5e-07 62.0 75 48.0
Duzib093G2247 Durio zibethinus HOM05D000727 ORTHO05D000541 2.0e-07 61.6 89 44.9
Hund19701 Selenicereus undatus HOM05D000727 ORTHO05D000541 2.6e-07 61.2 90 46.7
arahy.Tifrunner.gnm1.ann1.JM0DSQ Arachis hypogaea HOM05D000727 ORTHO05D000541 4.4e-07 60.5 101 38.6
arahy.Tifrunner.gnm1.ann1.8F15T7 Arachis hypogaea HOM05D000727 ORTHO05D000541 5.8e-07 60.1 101 38.6
unitig_749.g14170 Utricularia gibba HOM05D000727 ORTHO05D000541 7.5e-07 59.7 97 43.3
FvH4_6g11530 Fragaria vesca HOM05D000727 ORTHO05D000541 9.8e-07 59.3 87 46.0
FAN05G0296 Fragaria x ananassa HOM05D000727 ORTHO05D000541 9.8e-07 59.3 87 46.0
FAN14G4982 Fragaria x ananassa HOM05D000727 ORTHO05D000541 9.8e-07 59.3 87 46.0
Nn5g30987 Nelumbo nucifera HOM05D000727 ORTHO05D000541 9.8e-07 59.3 88 45.5
Atru.chr7.2469 Acer truncatum HOM05D004154 ORTHO05D004988 1.3e-06 58.9 42 66.7
Ciclev10012868m.g Citrus clementina HOM05D000727 ORTHO05D000541 1.3e-06 58.9 91 42.9
Thecc.05G017100 Theobroma cacao HOM05D000727 ORTHO05D000541 1.7e-06 58.5 89 43.8
Gohir.D01G217500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 2.2e-06 58.2 89 42.7
Gorai.002G263800 Gossypium raimondii HOM05D000727 ORTHO05D000541 2.2e-06 58.2 89 42.7
Peaxi162Scf00168g01736 Petunia axillaris HOM05D004154 ORTHO05D004988 2.2e-06 58.2 41 68.3
Gohir.D09G160300 Gossypium hirsutum HOM05D000727 ORTHO05D000541 2.9e-06 57.8 89 43.8
Gorai.006G181900 Gossypium raimondii HOM05D000727 ORTHO05D000541 2.9e-06 57.8 89 43.8
HanXRQChr01g0005941 Helianthus annuus HOM05D000727 ORTHO05D000541 2.9e-06 57.8 93 44.1
HanXRQChr13g0406191 Helianthus annuus HOM05D000727 ORTHO05D000541 2.9e-06 57.8 94 42.6
Duzib147G1147 Durio zibethinus HOM05D000727 ORTHO05D000541 3.7e-06 57.4 84 45.2
Lsat_1_v5_gn_8_100320 Lactuca sativa HOM05D000727 ORTHO05D000541 3.7e-06 57.4 95 42.1
Duzib116G0559 Durio zibethinus HOM05D000727 ORTHO05D000541 4.9e-06 57.0 95 41.1
CAN.G11.29 Capsicum annuum HOM05D009106 ORTHO05D010235 6.4e-06 56.6 88 38.6
Gohir.A01G227700 Gossypium hirsutum HOM05D000727 ORTHO05D000541 6.4e-06 56.6 86 43.0
Nn2g13692 Nelumbo nucifera HOM05D000727 ORTHO05D000541 6.4e-06 56.6 97 42.3
PSO801G0185 Papaver somniferum HOM05D000727 ORTHO05D000541 6.4e-06 56.6 94 44.7
QL06p052945 Quercus lobata HOM05D000727 ORTHO05D000541 6.4e-06 56.6 88 44.3
TWI09G0481 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 6.4e-06 56.6 89 41.6
GSVIVG01013385001 Vitis vinifera HOM05D000727 ORTHO05D000541 6.4e-06 56.6 89 46.1
Duzib128G1336 Durio zibethinus HOM05D000727 ORTHO05D000541 8.3e-06 56.2 105 41.9
FAN14G4731 Fragaria x ananassa HOM05D000727 ORTHO05D000541 8.3e-06 56.2 87 44.8
Nn7g36833 Nelumbo nucifera HOM05D000727 ORTHO05D000541 8.3e-06 56.2 88 43.2
PSO541G1006 Papaver somniferum HOM05D000727 ORTHO05D000541 8.3e-06 56.2 98 42.9
THA.LOC104813748 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 8.3e-06 56.2 88 40.9


User provided reference genes

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