Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 6.0e-147 524.6 366 100.0
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.3e-96 357.5 345 77.7
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 8.2e-96 354.8 349 77.4
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.4e-95 354.0 345 78.3
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.4e-95 354.0 345 78.3
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 3.1e-95 352.8 345 76.8
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 6.9e-95 351.7 343 76.7
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 5.9e-94 348.6 360 75.6
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 1.7e-93 347.1 343 75.8
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.9e-93 346.3 343 76.1
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 1.1e-92 344.4 343 76.4
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 2.5e-92 343.2 343 77.0
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 2.7e-91 339.7 344 74.1
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 6.1e-91 338.6 354 72.9
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.8e-90 337.0 344 73.0
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 3.9e-90 335.9 343 75.2
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.1e-89 334.3 319 80.6
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 2.0e-89 333.6 344 74.4
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 2.6e-89 333.2 346 72.5
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 2.2e-88 330.1 344 65.1
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 3.7e-88 329.3 344 74.4
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 3.7e-88 329.3 347 72.3
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 6.3e-88 328.6 343 76.1
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 8.2e-88 328.2 344 74.4
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 1.1e-87 327.8 345 75.1
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 3.1e-87 326.2 343 73.5
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 3.1e-87 326.2 343 73.5
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 3.1e-87 326.2 343 72.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 4.1e-87 325.9 346 74.6
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.2e-86 324.3 344 74.7
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 1.5e-86 323.9 329 76.3
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 2.0e-86 323.6 343 72.3
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.3e-85 320.9 343 63.0
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 1.3e-85 320.9 344 57.6
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 1.7e-85 320.5 344 73.8
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.1e-84 317.8 343 73.2
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 1.1e-84 317.8 344 57.8
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 1.9e-84 317.0 346 72.3
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 4.2e-84 315.8 343 72.3
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 5.5e-84 315.5 343 72.0
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 9.4e-84 314.7 343 72.9
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.2e-83 314.3 348 71.3
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 1.6e-83 313.9 371 57.4
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-83 313.9 343 72.6
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 2.1e-83 313.5 343 72.6
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 2.1e-83 313.5 347 71.5
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 2.1e-83 313.5 349 70.2
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 2.7e-83 313.2 344 71.8
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 7.9e-83 311.6 344 72.1
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.0e-82 311.2 366 68.9
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 3.0e-82 309.7 356 73.0
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 3.0e-82 309.7 344 72.1
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 6.7e-82 308.5 343 70.3
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.1e-81 307.8 345 71.3
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 2.0e-81 307.0 351 71.8
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 3.3e-81 306.2 344 70.9
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 7.4e-81 305.1 344 70.9
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 7.4e-81 305.1 343 70.0
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.2e-80 303.5 343 70.6
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 3.7e-80 302.8 350 72.9
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 8.2e-80 301.6 344 70.3
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 1.4e-79 300.8 344 59.9
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 5.9e-78 295.4 340 70.0
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.3e-77 294.3 338 71.3
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 1.5e-76 290.8 343 70.3
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 1.2e-75 287.7 351 71.5
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.2e-75 287.7 345 69.0
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.0e-74 284.6 351 69.8
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.4e-74 284.3 350 70.0
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 3.0e-74 283.1 344 69.8
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 5.2e-74 282.3 343 69.4
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 2.6e-73 280.0 349 66.8
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 2.6e-73 280.0 349 66.8
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 3.3e-73 279.6 355 67.9
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 4.4e-73 279.3 355 67.0
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.2e-72 276.9 352 69.0
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 2.8e-72 276.6 349 66.2
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 6.3e-72 275.4 349 66.2
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 8.2e-72 275.0 343 68.5
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 2.4e-71 273.5 464 39.2
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 2.7e-70 270.0 343 66.2
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 3.5e-70 269.6 383 46.7
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.2e-69 266.9 280 77.9
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 2.9e-69 266.5 301 72.1
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 7.2e-68 261.9 349 65.6
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.2e-67 261.2 334 68.6
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 6.1e-67 258.8 350 63.7
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 4.0e-66 256.1 316 70.3
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 1.2e-65 254.6 342 65.5
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 4.4e-65 252.7 345 64.3
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 4.4e-65 252.7 345 63.8
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 5.7e-65 252.3 316 69.9
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 2.8e-64 250.0 348 63.8
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 1.4e-63 247.7 350 65.1
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 4.1e-63 246.1 274 75.9
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 5.4e-63 245.7 289 75.8
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 9.1e-63 245.0 348 63.8
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.9e-60 237.3 348 63.2
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 9.5e-60 235.0 296 58.8
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 6.8e-58 228.8 290 71.0
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.5e-57 227.6 337 62.9
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 3.7e-56 223.0 351 51.9
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 1.4e-55 221.1 298 70.5
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 3.1e-55 219.9 339 61.4
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 2.0e-54 217.2 351 51.0
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 4.5e-54 216.1 363 60.9
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 6.6e-53 212.2 334 61.4
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 3.6e-51 206.5 313 63.6
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 7.5e-49 198.7 328 61.9
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 6.4e-48 195.7 336 59.5
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.4e-47 193.7 132 84.1
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.3e-45 187.2 296 65.2
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 4.3e-44 183.0 143 66.4
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.2e-43 181.4 132 81.1
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 1.6e-43 181.0 307 61.6
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.6e-43 179.9 329 58.1
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 8.0e-43 178.7 132 79.5
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 8.9e-42 175.3 297 60.9
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 1.2e-41 174.9 316 59.2
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 9.8e-41 171.8 158 58.9
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 8.3e-40 168.7 330 54.2
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 3.2e-39 166.8 157 56.1
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 4.6e-38 162.9 151 55.0
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 2.8e-35 153.7 347 51.6
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 8.6e-29 132.1 115 70.4
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.9e-28 131.0 329 52.9
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 7.3e-28 129.0 249 61.8
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.2e-27 128.3 132 64.4
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 1.2e-25 121.7 243 63.4
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 2.1e-22 110.9 336 49.1
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.3e-21 108.2 135 43.7
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 1.1e-18 98.6 227 54.2
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 3.2e-15 87.0 92 51.1
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 3.2e-15 87.0 84 76.2
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 2.3e-13 80.9 55 72.7
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 2.3e-13 80.9 58 69.0
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.1e-12 78.6 55 70.9


User provided reference genes

Program Settings