Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 0.0e+00 1939.1 962 100.0
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1109.4 981 59.3
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1097.0 955 61.3
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 0.0e+00 1080.9 942 59.8
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.1e-309 1066.6 930 60.3
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.9e-309 1065.8 961 59.2
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 1.4e-307 1059.7 949 57.6
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 2.6e-306 1055.4 967 58.0
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 5.7e-306 1054.3 999 55.6
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 5.3e-304 1047.7 958 57.7
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 4.2e-301 1038.1 938 58.6
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 2.1e-300 1035.8 891 59.0
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 4.7e-300 1034.6 950 58.3
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 7.5e-298 1027.3 948 57.2
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.7e-294 1016.1 1011 54.1
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 5.0e-294 1014.6 1012 54.1
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 4.7e-292 1008.1 1017 53.4
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 4.7e-292 1008.1 922 56.2
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 6.1e-292 1007.7 946 56.3
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 1.0e-291 1006.9 743 67.0
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 9.8e-290 1000.3 951 55.4
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 6.3e-289 997.7 968 54.9
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 1.1e-288 996.9 948 56.2
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.4e-288 995.7 980 54.3
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.5e-287 991.5 935 56.4
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 5.9e-287 991.1 948 53.9
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 1.3e-286 989.9 949 54.1
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.7e-286 989.6 951 55.7
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 2.2e-286 989.2 969 54.8
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.9e-285 986.1 901 57.3
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 7.2e-285 984.2 1041 51.3
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 4.7e-284 981.5 970 54.4
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 1.8e-283 979.5 952 54.4
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.5e-282 976.5 969 54.5
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.7e-281 973.0 939 55.6
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 2.4e-280 969.1 974 54.3
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 3.1e-280 968.8 948 54.7
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 3.1e-280 968.8 979 53.6
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 1.6e-279 966.5 994 53.2
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.3e-278 963.4 994 53.3
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.4e-275 953.4 963 52.1
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 8.9e-275 950.7 750 62.8
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 4.9e-273 944.9 960 53.2
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 5.4e-272 941.4 946 52.5
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 7.0e-272 941.0 863 56.1
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.6e-271 939.9 978 51.8
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 3.5e-271 938.7 955 53.3
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 4.6e-271 938.3 918 55.0
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.0e-270 937.2 965 53.3
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.0e-270 937.2 970 51.4
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.3e-270 936.8 932 53.6
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 3.9e-270 935.3 938 52.8
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.3e-269 931.0 925 54.4
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.2e-268 930.2 970 51.2
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 3.6e-268 928.7 884 54.8
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 1.8e-267 926.4 973 52.8
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 3.7e-265 918.7 943 52.6
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.4e-264 916.8 945 53.2
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 2.4e-264 916.0 979 51.9
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 9.2e-264 914.1 964 52.3
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.0e-262 910.6 925 53.3
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 1.9e-261 906.4 951 51.4
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 3.1e-259 899.0 943 52.5
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 4.3e-253 878.6 972 48.8
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 6.2e-252 874.8 971 49.5
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.2e-249 866.3 938 50.6
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.1e-248 864.0 948 50.7
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 3.5e-247 859.0 934 50.7
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 3.0e-246 855.9 936 51.2
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 3.9e-246 855.5 960 50.1
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.9e-246 855.5 952 49.5
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 1.1e-245 854.0 967 47.3
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 6.2e-244 848.2 963 49.7
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 8.1e-244 847.8 947 50.3
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 1.1e-243 847.4 947 50.6
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.6e-242 842.8 943 48.6
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 9.9e-242 840.9 679 61.1
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 3.2e-240 835.9 949 47.5
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 4.2e-240 835.5 942 49.5
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.3e-238 830.5 983 48.3
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 4.9e-233 812.0 929 49.3
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 2.8e-228 796.2 890 50.0
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.5e-226 790.4 939 46.2
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 7.6e-226 788.1 808 53.3
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 7.6e-226 788.1 527 72.3
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.2e-215 754.2 551 66.2
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 2.3e-214 750.0 563 63.2
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 1.6e-207 727.2 455 74.7
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 8.7e-206 721.5 697 53.1
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.4e-198 697.6 963 42.9
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 3.9e-198 696.0 935 44.8
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 2.6e-189 666.8 476 69.5
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 4.8e-188 662.5 731 51.2
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 5.5e-184 649.0 791 47.4
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.4e-182 644.4 1036 38.0
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 1.5e-181 641.0 749 48.9
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 2.4e-179 633.6 1143 35.9
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-177 627.5 931 41.2
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 1.6e-175 620.9 802 41.8
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.9e-168 597.4 602 51.3
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.6e-162 577.8 998 38.2
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.4e-155 552.7 830 40.6
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.3e-152 543.5 706 43.3
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 4.1e-147 526.6 445 60.4
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 4.1e-147 526.6 445 60.4
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-141 508.4 729 41.2
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.6e-137 492.3 477 51.6
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.3e-136 490.0 926 34.8
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 6.4e-132 476.1 275 80.4
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 8.7e-129 465.7 310 70.3
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-119 435.3 717 38.6
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 4.2e-115 420.2 358 60.9
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-111 408.3 614 40.2
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 2.8e-111 407.5 486 49.6
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.8e-103 380.9 310 64.2
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 2.1e-98 364.8 614 39.9
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.7e-97 359.8 724 35.8
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-95 355.1 851 32.9
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-92 345.5 852 31.3
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 7.2e-83 313.2 400 41.8
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 3.7e-79 300.8 530 34.9
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.5e-77 295.4 440 42.5
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.1e-75 289.3 587 34.4
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 7.2e-75 286.6 158 79.7
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 1.8e-65 255.4 389 40.4
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 5.2e-65 253.8 269 48.3
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 6.3e-63 246.9 142 77.5
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 9.1e-62 243.0 397 37.3
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.1e-54 216.5 189 52.9
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 7.5e-48 196.8 513 30.2
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.7e-47 195.7 164 62.8
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 3.2e-46 191.4 109 80.7
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 5.4e-46 190.7 410 35.1
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-45 188.7 158 53.8
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 8.6e-44 183.3 206 51.5
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.2e-42 179.5 380 32.9
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 5.2e-41 174.1 111 75.7
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.2e-41 174.1 142 63.4
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 5.2e-41 174.1 106 77.4
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.6e-36 157.1 630 25.9
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.1e-33 149.8 263 38.0
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.1e-29 135.6 518 26.4
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 9.5e-27 126.7 86 65.1
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 2.1e-26 125.6 87 64.4
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 2.8e-26 125.2 288 29.5
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 2.8e-26 125.2 84 69.0
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.8e-25 122.5 83 77.1
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 2.3e-25 122.1 123 56.9
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 3.2e-22 111.7 78 66.7
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.6e-18 98.2 169 40.2
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 9.9e-16 90.1 95 51.6
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 8.4e-15 87.0 109 43.1
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 2.3e-12 79.0 64 60.9
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 2.5e-11 75.5 77 49.4
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.3e-09 67.8 107 40.2
EL10Ac3g05590 Beta vulgaris HOM05D004739 ORTHO05D005784 5.8e-08 64.3 100 42.0


User provided reference genes

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