Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 4.3e-172 607.8 294 100.0
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 2.2e-112 409.5 256 73.8
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.5e-111 406.0 257 73.9
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 3.2e-111 405.6 256 76.2
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.7e-110 402.5 256 73.4
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 2.7e-110 402.5 256 72.3
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 8.0e-110 401.0 256 73.0
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 1.4e-109 400.2 254 71.3
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 2.3e-109 399.4 255 72.9
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 8.8e-109 397.5 256 69.1
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.5e-108 396.7 256 70.7
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 2.6e-108 396.0 256 71.5
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 7.5e-108 394.4 251 72.5
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 7.5e-108 394.4 256 71.1
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.9e-107 391.7 256 71.5
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 4.9e-107 391.7 256 69.9
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 8.3e-107 391.0 256 71.5
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 1.4e-106 390.2 256 70.7
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.4e-106 390.2 256 71.5
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.8e-106 389.8 256 70.3
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 3.1e-106 389.0 256 69.9
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 3.1e-106 389.0 256 69.5
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.1e-106 388.7 256 69.5
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 4.1e-106 388.7 256 71.5
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 9.2e-106 387.5 247 72.5
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.6e-105 386.7 256 69.9
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 1.6e-105 386.7 256 69.9
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 4.5e-105 385.2 255 69.4
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 4.5e-105 385.2 256 68.0
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 7.7e-105 384.4 255 69.4
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.3e-104 383.6 255 69.0
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 2.9e-104 382.5 256 67.6
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 3.8e-104 382.1 256 68.8
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 5.0e-104 381.7 262 66.8
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 6.6e-104 381.3 256 68.8
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 8.6e-104 380.9 255 69.4
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.9e-103 379.8 248 69.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 2.5e-103 379.4 251 68.9
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 2.5e-103 379.4 256 67.2
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 3.3e-103 379.0 256 66.4
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 4.3e-103 378.6 256 65.6
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.6e-102 376.7 262 66.0
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.6e-102 376.7 266 68.0
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 2.1e-102 376.3 271 64.9
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 3.6e-102 375.6 256 68.0
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.8e-101 373.2 256 67.2
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 5.2e-101 371.7 273 65.2
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 9.8e-100 367.5 256 68.4
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 6.4e-99 364.8 256 65.6
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.4e-99 364.8 256 66.4
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 2.4e-98 362.8 256 63.7
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 2.4e-98 362.8 256 64.1
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 7.0e-98 361.3 217 75.1
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 2.7e-97 359.4 256 63.3
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 4.6e-97 358.6 256 63.7
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.0e-96 357.5 256 64.8
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 5.0e-96 355.1 265 61.5
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 6.6e-96 354.8 256 62.9
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 8.6e-96 354.4 256 65.6
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.1e-95 354.0 265 61.1
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.5e-95 353.6 248 64.1
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 2.5e-95 352.8 256 64.8
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.3e-95 352.1 256 62.9
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 4.3e-95 352.1 254 63.8
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 9.5e-95 350.9 256 62.1
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 9.5e-95 350.9 251 65.7
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.2e-94 350.5 255 63.1
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 1.2e-94 350.5 256 65.2
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.2e-94 350.5 256 65.2
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 2.1e-94 349.7 256 62.5
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 2.8e-94 349.4 256 63.7
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 6.2e-94 348.2 251 63.7
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.0e-93 347.4 256 62.5
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.0e-93 347.4 256 59.8
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.4e-93 347.1 256 60.9
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.3e-93 346.3 256 62.1
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 3.1e-93 345.9 256 60.9
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.5e-92 343.6 256 60.5
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 1.5e-92 343.6 255 62.4
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 3.4e-92 342.4 256 60.5
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 5.8e-92 341.7 274 60.6
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 2.9e-91 339.3 256 62.5
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 6.6e-88 328.2 216 66.2
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 3.1e-85 319.3 256 59.0
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 8.9e-85 317.8 241 60.6
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 2.9e-83 312.8 232 60.8
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 9.5e-79 297.7 256 54.7
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 9.5e-79 297.7 188 71.8
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.4e-77 293.9 216 61.6
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.2e-76 290.8 188 68.6
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 5.8e-76 288.5 184 70.7
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.8e-75 285.8 255 55.7
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.4e-74 283.1 255 55.3
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.2e-73 280.8 188 64.9
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 3.0e-72 276.2 255 49.4
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.9e-71 273.5 199 63.8
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 3.3e-71 272.7 182 69.8
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.2e-70 270.8 254 49.6
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 2.8e-70 269.6 162 74.7
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 2.8e-70 269.6 252 48.4
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.1e-69 267.7 251 53.4
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 1.1e-69 267.7 248 49.6
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 4.0e-69 265.8 256 52.7
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 8.7e-64 248.1 214 56.5
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 1.9e-63 246.9 154 70.1
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 3.3e-63 246.1 154 69.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.2e-60 237.7 153 69.3
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 9.3e-58 228.0 240 52.1
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.0e-56 224.6 240 51.2
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.5e-55 219.9 182 59.3
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.6e-54 217.2 148 66.9
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 6.2e-54 215.3 157 67.5
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 3.8e-43 179.5 209 45.9
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 2.7e-41 173.3 216 37.0
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 6.0e-41 172.2 124 62.1
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 8.7e-40 168.3 196 48.0
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.5e-39 166.8 148 56.1
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.3e-38 164.5 232 43.5
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 1.1e-37 161.4 114 60.5
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.3e-35 154.5 130 57.7
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.3e-35 154.5 108 66.7
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.8e-32 144.1 210 37.1
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.0e-28 130.6 102 60.8
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.9e-27 126.7 77 70.1
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 3.8e-27 126.3 100 60.0
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 1.4e-24 117.9 104 54.8
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 5.9e-20 102.4 76 60.5
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 5.0e-19 99.4 72 69.4
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.5e-18 97.1 67 71.6
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 2.0e-15 87.4 76 59.2
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.3e-08 63.9 79 44.3
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 2.6e-07 60.5 51 54.9


User provided reference genes

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