Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 1.9e-285 985.3 563 100.0
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 9.7e-189 664.1 580 70.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 2.7e-175 619.4 572 67.5
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 1.9e-168 596.7 556 65.1
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 1.6e-167 593.6 593 63.9
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 5.2e-166 588.6 533 68.5
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 8.8e-166 587.8 542 67.0
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 3.7e-164 582.4 586 62.5
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.4e-163 580.5 593 62.4
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.4e-163 579.7 590 62.5
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.0e-162 576.6 574 63.8
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 4.5e-162 575.5 591 61.4
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 6.6e-161 571.6 603 60.9
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 5.5e-160 568.5 536 63.8
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 2.1e-159 566.6 583 61.7
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.1e-159 566.6 608 61.7
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.6e-159 565.8 536 63.6
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 1.4e-158 563.9 587 62.0
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 2.3e-158 563.1 584 62.5
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.8e-158 561.6 536 63.4
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 8.9e-158 561.2 606 59.6
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 3.4e-157 559.3 584 61.6
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 1.4e-155 553.9 533 66.4
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 1.4e-155 553.9 468 67.1
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.8e-155 553.5 575 61.4
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 7.0e-155 551.6 592 58.4
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.6e-154 550.4 483 65.2
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 4.3e-152 542.3 566 60.4
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 7.3e-152 541.6 539 62.0
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 9.5e-152 541.2 598 56.9
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 2.8e-151 539.7 603 58.4
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 6.1e-151 538.5 582 58.8
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 6.1e-151 538.5 585 60.5
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 9.8e-149 531.2 584 59.8
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 8.3e-148 528.1 572 61.5
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 7.0e-147 525.0 464 65.5
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 2.0e-146 523.5 470 63.2
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 3.0e-145 519.6 513 59.6
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 6.6e-145 518.5 528 59.5
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.5e-144 516.5 453 65.1
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 3.3e-144 516.2 532 63.3
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 2.1e-143 513.5 640 53.0
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.1e-143 513.5 588 59.5
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 1.4e-142 510.8 467 64.2
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 2.3e-142 510.0 608 56.9
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 5.2e-142 508.8 606 59.2
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 8.9e-142 508.1 387 72.1
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 1.3e-140 504.2 441 64.6
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.4e-139 500.7 475 62.7
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 7.1e-139 498.4 608 54.8
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.2e-138 497.7 583 58.3
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 3.5e-138 496.1 543 59.9
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 7.8e-138 495.0 565 58.2
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.7e-137 493.8 577 56.3
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 3.9e-137 492.7 597 57.3
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 1.2e-135 487.6 428 63.6
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 2.8e-135 486.5 445 62.5
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 8.1e-135 485.0 550 57.3
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.1e-134 484.6 615 55.4
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 1.8e-134 483.8 613 54.0
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 2.3e-134 483.4 440 63.9
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 5.2e-134 482.3 434 63.8
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 1.2e-133 481.1 614 55.2
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.5e-133 480.7 474 61.4
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 3.4e-133 479.6 589 53.7
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 9.9e-133 478.0 564 55.3
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 1.3e-132 477.6 419 64.9
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 8.3e-132 474.9 439 62.9
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 1.4e-131 474.2 639 52.7
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 2.4e-131 473.4 479 60.5
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 9.2e-131 471.5 594 53.5
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 1.2e-130 471.1 538 55.6
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 7.8e-130 468.4 588 52.2
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.0e-129 468.0 590 53.7
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 2.3e-129 466.8 401 66.3
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 6.6e-129 465.3 579 54.9
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 2.5e-128 463.4 626 52.1
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 3.3e-128 463.0 477 60.4
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.1e-126 458.0 477 60.0
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 2.6e-125 453.4 590 53.2
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 5.8e-125 452.2 351 69.2
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 3.0e-121 439.9 417 60.9
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 3.0e-121 439.9 454 57.3
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 8.7e-121 438.3 508 55.3
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 2.1e-119 433.7 354 66.9
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 4.0e-118 429.5 485 53.6
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 1.2e-117 427.9 592 52.4
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.6e-114 417.5 558 52.3
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.6e-114 417.5 498 53.4
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 6.0e-114 415.6 475 55.6
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 7.8e-114 415.2 556 51.1
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 1.7e-113 414.1 479 53.9
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 8.7e-113 411.8 396 63.4
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 8.7e-113 411.8 396 63.4
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.1e-112 411.4 398 57.8
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.1e-112 411.4 396 63.6
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.9e-112 410.6 396 63.4
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.1e-110 404.8 533 50.5
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 9.9e-109 398.3 539 51.0
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 4.6e-106 389.4 559 50.6
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 4.6e-106 389.4 559 50.6
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 1.0e-105 388.3 535 50.1
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 3.9e-105 386.3 558 49.5
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 8.7e-105 385.2 417 53.7
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.5e-104 384.4 495 50.3
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.9e-104 384.0 460 51.1
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 9.6e-104 381.7 566 48.9
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 3.1e-102 376.7 534 48.9
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 2.6e-101 373.6 545 50.1
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 7.6e-101 372.1 538 47.6
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 7.6e-101 372.1 476 55.3
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 1.2e-98 364.8 559 44.7
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 7.4e-96 355.5 296 65.9
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 4.1e-94 349.7 536 47.4
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.6e-90 336.3 450 52.7
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 3.7e-79 300.1 341 51.0
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 1.8e-78 297.7 365 48.2
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 2.0e-77 294.3 331 51.4
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 3.8e-76 290.0 349 49.3
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.5e-69 268.1 237 64.6
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 3.7e-63 246.9 373 43.7
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 7.2e-59 232.6 372 42.2
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.2e-58 231.9 273 50.5
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.1e-58 231.1 464 40.9
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 8.0e-58 229.2 299 47.5
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 6.3e-55 219.5 434 40.8
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 3.2e-51 207.2 248 48.4
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 3.2e-51 207.2 190 64.7
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.8e-49 201.4 279 54.8
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.8e-49 201.4 288 51.4
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 4.0e-41 173.7 103 81.6
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 5.2e-41 173.3 176 61.9
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 7.8e-29 132.9 136 61.0
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 1.0e-28 132.5 155 56.8
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 6.6e-28 129.8 273 38.1
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 3.6e-26 124.0 255 31.4
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 2.6e-24 117.9 290 30.7
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 4.1e-22 110.5 426 29.6
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 6.0e-21 106.7 138 52.2
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 8.6e-20 102.8 89 57.3
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 1.6e-18 98.6 63 77.8
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.6e-13 82.0 43 86.0
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 7.8e-13 79.7 41 92.7
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 5.6e-11 73.6 178 47.2
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.4e-09 68.2 182 37.9
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 2.4e-06 58.2 43 65.1
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 4.2e-06 57.4 232 40.5


User provided reference genes

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