Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 9.2e-33 142.9 69 100.0
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 2.1e-16 88.6 51 82.4
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 3.0e-15 84.7 48 85.4
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 3.9e-15 84.3 43 90.7
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 3.9e-15 84.3 48 83.3
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 3.9e-15 84.3 48 83.3
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 3.9e-15 84.3 48 83.3
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 3.9e-15 84.3 43 90.7
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 6.6e-15 83.6 43 90.7
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 6.6e-15 83.6 50 80.0
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 8.7e-15 83.2 48 81.2
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.1e-14 82.8 43 88.4
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 1.1e-14 82.8 43 90.7
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 1.1e-14 82.8 48 81.2
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 1.5e-14 82.4 43 88.4
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 1.9e-14 82.0 43 88.4
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 1.9e-14 82.0 43 88.4
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.5e-14 81.6 43 88.4
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 2.5e-14 81.6 43 86.0
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 2.5e-14 81.6 43 88.4
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 2.5e-14 81.6 43 88.4
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 2.5e-14 81.6 43 88.4
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 2.5e-14 81.6 43 86.0
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 3.3e-14 81.3 43 88.4
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 3.3e-14 81.3 43 86.0
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 4.3e-14 80.9 43 88.4
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 4.3e-14 80.9 43 88.4
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 4.3e-14 80.9 43 88.4
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 4.3e-14 80.9 43 88.4
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 4.3e-14 80.9 40 90.0
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 4.3e-14 80.9 50 76.0
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 4.3e-14 80.9 43 88.4
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 5.6e-14 80.5 62 64.5
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 5.6e-14 80.5 43 88.4
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 5.6e-14 80.5 40 90.0
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 5.6e-14 80.5 43 86.0
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 5.6e-14 80.5 43 86.0
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 5.6e-14 80.5 43 86.0
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 5.6e-14 80.5 40 90.0
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 5.6e-14 80.5 43 86.0
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 7.3e-14 80.1 43 86.0
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 7.3e-14 80.1 43 88.4
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 7.3e-14 80.1 40 90.0
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 7.3e-14 80.1 43 83.7
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 7.3e-14 80.1 43 86.0
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 9.6e-14 79.7 43 86.0
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 9.6e-14 79.7 43 86.0
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 9.6e-14 79.7 43 86.0
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 9.6e-14 79.7 43 88.4
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 9.6e-14 79.7 43 83.7
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 1.3e-13 79.3 40 87.5
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 1.3e-13 79.3 43 86.0
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 1.3e-13 79.3 43 86.0
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 1.3e-13 79.3 48 75.0
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.3e-13 79.3 43 86.0
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.3e-13 79.3 43 86.0
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.6e-13 79.0 43 83.7
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 2.1e-13 78.6 43 83.7
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 2.1e-13 78.6 43 83.7
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 2.1e-13 78.6 43 83.7
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.1e-13 78.6 40 87.5
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.1e-13 78.6 40 87.5
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 2.8e-13 78.2 43 83.7
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 2.8e-13 78.2 38 92.1
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 2.8e-13 78.2 62 62.9
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 3.6e-13 77.8 40 85.0
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 3.6e-13 77.8 40 87.5
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 4.8e-13 77.4 40 87.5
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 4.8e-13 77.4 62 62.9
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 6.2e-13 77.0 43 81.4
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 8.1e-13 76.6 43 81.4
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 8.1e-13 76.6 50 74.0
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 8.1e-13 76.6 43 83.7
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 1.1e-12 76.3 48 70.8
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.1e-12 76.3 40 82.5
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.1e-12 76.3 50 74.0
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 1.4e-12 75.9 53 62.3
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.8e-12 75.5 43 81.4
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.8e-12 75.5 43 81.4
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 1.8e-12 75.5 40 85.0
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 2.4e-12 75.1 62 59.7
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 2.4e-12 75.1 62 59.7
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 3.1e-12 74.7 43 79.1
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 3.1e-12 74.7 38 86.8
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 3.1e-12 74.7 38 86.8
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 3.1e-12 74.7 38 86.8
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 3.1e-12 74.7 38 86.8
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 3.1e-12 74.7 38 86.8
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 3.1e-12 74.7 38 86.8
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 3.1e-12 74.7 38 86.8
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 3.1e-12 74.7 43 79.1
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 3.1e-12 74.7 38 86.8
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 3.1e-12 74.7 40 82.5
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 3.1e-12 74.7 43 81.4
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 4.0e-12 74.3 43 79.1
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 5.3e-12 73.9 43 79.1
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 5.3e-12 73.9 40 80.0
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 6.9e-12 73.6 43 79.1
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 6.9e-12 73.6 43 79.1
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 6.9e-12 73.6 43 79.1
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 6.9e-12 73.6 43 79.1
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 6.9e-12 73.6 43 79.1
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 6.9e-12 73.6 43 81.4
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 6.9e-12 73.6 43 79.1
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 9.0e-12 73.2 43 79.1
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.5e-11 72.4 43 79.1
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 2.0e-11 72.0 43 74.4
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 2.6e-11 71.6 43 79.1
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 9.9e-11 69.7 58 58.6
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 1.7e-10 68.9 40 82.5
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 6.4e-10 67.0 43 67.4
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 2.4e-09 65.1 43 65.1
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 2.4e-09 65.1 43 65.1
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 2.4e-09 65.1 43 65.1
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 2.7e-08 61.6 43 62.8


User provided reference genes

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