Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022420 Daucus carota HOM05D001734 ORTHO05D006943 3.0e-27 124.4 62 100.0
DCAR_022421 Daucus carota HOM05D001734 ORTHO05D006943 7.5e-26 119.8 59 100.0
Potri.004G179000 Populus trichocarpa HOM05D001734 ORTHO05D006943 4.1e-16 87.4 56 76.8
Sabra04G0120500 Salix brachista HOM05D001734 ORTHO05D006943 4.1e-16 87.4 56 76.8
Dinv14134 Davidia involucrata HOM05D001734 ORTHO05D006943 3.5e-15 84.3 56 82.1
TWI79G0733 Tripterygium wilfordii HOM05D001734 ORTHO05D006943 6.0e-15 83.6 59 74.6
Oeu028956.2 Olea europaea HOM05D001734 ORTHO05D006943 1.7e-14 82.0 56 80.4
CSS0001027 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D006943 2.3e-14 81.6 56 76.8
CSS0020547 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D006943 2.3e-14 81.6 56 76.8
Cpa.g.sc20.125 Carica papaya HOM05D001734 ORTHO05D006943 2.3e-14 81.6 56 75.0
Ciclev10027660m.g Citrus clementina HOM05D001734 ORTHO05D006943 2.3e-14 81.6 59 74.6
Peaxi162Scf00362g00442 Petunia axillaris HOM05D001734 ORTHO05D006943 2.3e-14 81.6 56 75.0
CAN.G588.109 Capsicum annuum HOM05D001734 ORTHO05D006943 3.0e-14 81.3 56 75.0
Actinidia18030 Actinidia chinensis HOM05D001734 ORTHO05D006943 3.9e-14 80.9 56 75.0
CiPaw.06G119600 Carya illinoinensis HOM05D001734 ORTHO05D006943 3.9e-14 80.9 56 78.6
Cc09_g10400 Coffea canephora HOM05D001734 ORTHO05D006943 3.9e-14 80.9 54 77.8
CSS0005128 Camellia sinensis var. sinensis HOM05D001734 ORTHO05D006943 5.0e-14 80.5 56 75.0
Solyc01g111870.3 Solanum lycopersicum HOM05D001734 ORTHO05D006943 5.0e-14 80.5 56 73.2
Sopen01g053910 Solanum pennellii HOM05D001734 ORTHO05D006943 5.0e-14 80.5 56 73.2
PGSC0003DMG402018643 Solanum tuberosum HOM05D001734 ORTHO05D006943 5.0e-14 80.5 56 73.2
CSS0028723 Camellia sinensis var. sinensis HOM05D000560 ORTHO05D006943 8.6e-14 79.7 56 75.0
GSVIVG01023964001 Vitis vinifera HOM05D001734 ORTHO05D006943 8.6e-14 79.7 56 78.6
Aqoxy5G01087 Aquilegia oxysepala HOM05D001734 ORTHO05D006943 1.9e-13 78.6 56 75.0
Manes.04G069900 Manihot esculenta HOM05D001734 ORTHO05D006943 1.9e-13 78.6 58 70.7
HanXRQChr05g0141851 Helianthus annuus HOM05D001734 ORTHO05D006943 2.5e-13 78.2 56 71.4
Lj5A175T98 Lonicera japonica HOM05D001734 ORTHO05D006943 2.5e-13 78.2 56 73.2
TAR628G1453 Trochodendron aralioides HOM05D001734 ORTHO05D006943 2.5e-13 78.2 56 78.6
vmacro02297 Vaccinium macrocarpon HOM05D001734 ORTHO05D006943 2.5e-13 78.2 56 75.0
ClCG02G003850 Citrullus lanatus HOM05D001734 ORTHO05D006943 3.3e-13 77.8 56 75.0
Rhsim11G0194400 Rhododendron simsii HOM05D001734 ORTHO05D006943 3.3e-13 77.8 56 73.2
Sp4g00080 Schrenkiella parvula HOM05D001734 ORTHO05D006943 3.3e-13 77.8 54 75.9
CARHR115960 Cardamine hirsuta HOM05D001734 ORTHO05D006943 4.3e-13 77.4 57 71.9
AT5G40820 Arabidopsis thaliana HOM05D001734 ORTHO05D006943 5.6e-13 77.0 56 75.0
CSS0006982 Camellia sinensis var. sinensis HOM05D000560 ORTHO05D000417 5.6e-13 77.0 56 73.2
Ca_03288_v3 Cicer arietinum L. HOM05D001734 ORTHO05D006943 7.3e-13 76.6 61 65.6
AL7G48800 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 9.5e-13 76.3 59 69.5
Phvul.007G016800 Phaseolus vulgaris HOM05D001734 ORTHO05D006943 9.5e-13 76.3 60 70.0
Sed0017558 Sechium edule HOM05D001734 ORTHO05D006943 9.5e-13 76.3 56 73.2
Lj5g0001935 Lotus japonicus HOM05D001734 ORTHO05D006943 2.8e-12 74.7 60 68.3
Nitab4.5_0004867g0090 Nicotiana tabacum HOM05D001734 ORTHO05D006943 3.6e-12 74.3 58 69.0
unitig_21.g20845 Utricularia gibba HOM05D001734 ORTHO05D006943 3.6e-12 74.3 56 73.2
AL7G48900 Arabidopsis lyrata HOM05D001734 ORTHO05D006943 4.7e-12 73.9 59 67.8
Lsat_1_v5_gn_3_6601 Lactuca sativa HOM05D001734 ORTHO05D006943 6.2e-12 73.6 56 67.9
Psat6g232760 Pisum sativum HOM05D001734 ORTHO05D006943 8.1e-12 73.2 61 65.6
VMungo0720G2261 Vigna mungo HOM05D001734 ORTHO05D006943 8.1e-12 73.2 60 66.7
COL.COLO4_18014 Corchorus olitorius HOM05D001734 ORTHO05D006943 1.1e-11 72.8 58 70.7
A04p15830 Brassica napus HOM05D001734 ORTHO05D006943 3.1e-11 71.2 54 72.2
BraA04t17214Z Brassica rapa HOM05D000482 ORTHO05D006943 3.1e-11 71.2 54 72.2
Thhalv10027615m.g Eutrema salsugineum HOM05D001734 ORTHO05D006943 5.2e-11 70.5 54 70.4
RcHm_v2.0_Chr6g0279121 Rosa chinensis HOM05D001734 ORTHO05D006943 6.8e-11 70.1 54 68.5
BcaB06g27763 Brassica carinata HOM05D001734 ORTHO05D006943 8.9e-11 69.7 54 70.4
BolC4t26623H Brassica oleracea HOM05D001734 ORTHO05D006943 8.9e-11 69.7 54 70.4
Gohir.A12G035900 Gossypium hirsutum HOM05D001734 ORTHO05D006943 8.9e-11 69.7 55 67.3
Gohir.D12G036700 Gossypium hirsutum HOM05D001734 ORTHO05D006943 8.9e-11 69.7 55 67.3
Gorai.008G037900 Gossypium raimondii HOM05D001734 ORTHO05D006943 8.9e-11 69.7 55 67.3
Nitab4.5_0004557g0050 Nicotiana tabacum HOM05D001734 ORTHO05D006943 8.9e-11 69.7 58 65.5
Cfa005298 Carpinus fangiana HOM05D001734 ORTHO05D006943 1.2e-10 69.3 54 72.2
Haze_02089 Corylus avellana HOM05D001734 ORTHO05D006943 1.2e-10 69.3 54 72.2
MELO3C013324.2 Cucumis melo HOM05D001734 ORTHO05D006943 1.2e-10 69.3 56 67.9
CsaV3_7G001280 Cucumis sativus L. HOM05D001734 ORTHO05D006943 1.2e-10 69.3 56 67.9
Glyma.10G284200 Glycine max HOM05D001734 ORTHO05D006943 1.2e-10 69.3 56 67.9
SGA_v2.0_scaffold32G13315 Striga asiatica HOM05D001734 ORTHO05D006943 1.2e-10 69.3 56 67.9
QL11p052553 Quercus lobata HOM05D001734 ORTHO05D006943 1.5e-10 68.9 57 64.9
C04p50230 Brassica napus HOM05D001734 ORTHO05D006943 2.6e-10 68.2 54 68.5
TPR.G2476 Trifolium pratense HOM05D001734 ORTHO05D006943 2.6e-10 68.2 58 58.6
HPP92_022388 Vanilla planifolia HOM05D001734 ORTHO05D006943 2.6e-10 68.2 55 63.6
Aa31LG7G14750 Aethionema arabicum HOM05D001734 ORTHO05D006943 4.4e-10 67.4 59 66.1
Migut.B00045 Erythranthe guttata HOM05D001734 ORTHO05D006943 4.4e-10 67.4 56 66.1
Lalb_Chr06g0163781 Lupinus albus HOM05D001734 ORTHO05D006943 4.4e-10 67.4 54 63.0
Eucgr.I01462 Eucalyptus grandis HOM05D001734 ORTHO05D006943 5.8e-10 67.0 56 66.1
TPR.G2477 Trifolium pratense HOM05D001734 ORTHO05D006943 7.5e-10 66.6 57 57.9
MBI18_g09841_MAGBIO Magnolia biondii HOM05D001734 ORTHO05D006943 9.8e-10 66.2 56 66.1
PGR142G2610 Punica granatum HOM05D001734 ORTHO05D006943 9.8e-10 66.2 56 58.9
FAN27G0836 Fragaria x ananassa HOM05D001734 ORTHO05D006943 1.3e-09 65.9 51 66.7
Hund00010 Selenicereus undatus HOM05D001734 ORTHO05D006943 2.2e-09 65.1 56 64.3
PSO421G0641 Papaver somniferum HOM05D001734 ORTHO05D006943 3.7e-09 64.3 57 52.6
FvH4_2g15770 Fragaria vesca HOM05D001734 ORTHO05D006943 4.9e-09 63.9 51 64.7
FAN20G0548 Fragaria x ananassa HOM05D001734 ORTHO05D006943 4.9e-09 63.9 51 64.7
FAN24G0945 Fragaria x ananassa HOM05D001734 ORTHO05D006943 4.9e-09 63.9 51 64.7
MD05G1126600 Malus domestica HOM05D001734 ORTHO05D006943 4.9e-09 63.9 54 70.4
AUR62012990 Chenopodium quinoa HOM05D001734 ORTHO05D006943 6.4e-09 63.5 54 61.1
PSO170G1896 Papaver somniferum HOM05D001734 ORTHO05D006943 6.4e-09 63.5 55 63.6
PSO210G4774 Papaver somniferum HOM05D001734 ORTHO05D006943 6.4e-09 63.5 55 63.6
MD10G1129800 Malus domestica HOM05D001734 ORTHO05D006943 1.1e-08 62.8 54 68.5
FAN15G3013 Fragaria x ananassa HOM05D001734 ORTHO05D006943 1.4e-08 62.4 51 62.7
AUR62010002 Chenopodium quinoa HOM05D001734 ORTHO05D006943 2.4e-08 61.6 54 59.3
CANSAT25G2086 Cannabis sativa HOM05D001734 ORTHO05D006943 3.2e-08 61.2 54 61.1
Nn6g31886 Nelumbo nucifera HOM05D001734 ORTHO05D006943 3.2e-08 61.2 56 58.9
EL10Ac9g21328 Beta vulgaris HOM05D001734 ORTHO05D006943 2.7e-07 58.2 54 59.3
Lj1g0005537 Lotus japonicus HOM05D001873 ORTHO05D001976 3.0e-06 54.7 60 60.0
arahy.Tifrunner.gnm1.ann1.M4HWYD Arachis hypogaea HOM05D001734 ORTHO05D006943 8.6e-06 53.1 64 50.0


User provided reference genes

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