Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 0.0e+00 1199.9 671 100.0
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 3.7e-296 1021.1 671 83.2
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 8.6e-285 983.4 672 80.8
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.1e-283 978.8 671 81.5
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.1e-283 978.8 671 81.5
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 5.8e-281 970.7 670 79.7
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 2.4e-279 965.3 669 81.0
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 3.2e-279 964.9 670 78.8
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 7.1e-279 963.8 673 79.6
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 3.5e-278 961.4 672 78.9
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 3.5e-278 961.4 672 79.6
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 4.6e-278 961.1 672 79.0
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 1.7e-277 959.1 672 80.2
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 3.9e-277 958.0 672 80.4
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 8.6e-277 956.8 672 80.1
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 9.5e-276 953.4 672 78.4
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 8.1e-275 950.3 672 78.1
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 1.4e-274 949.5 672 79.5
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 1.4e-274 949.5 670 79.7
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 1.8e-274 949.1 672 77.8
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 1.2e-273 946.4 745 66.2
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 3.4e-273 944.9 672 77.5
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 3.4e-273 944.9 672 70.2
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 3.4e-273 944.9 672 78.4
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 1.3e-272 943.0 672 77.2
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 1.7e-272 942.6 671 77.0
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 4.9e-272 941.0 672 78.9
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 6.0e-270 934.1 672 78.0
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 6.0e-270 934.1 669 69.7
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 1.3e-269 932.9 672 77.1
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 1.1e-268 929.9 674 77.3
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 1.9e-268 929.1 672 77.4
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 3.3e-268 928.3 672 76.8
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 2.1e-267 925.6 672 77.2
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 4.7e-267 924.5 669 76.8
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 2.4e-266 922.2 659 69.8
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 3.1e-266 921.8 672 77.2
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 5.2e-266 921.0 672 76.9
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 2.0e-265 919.1 673 74.9
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 5.8e-265 917.5 670 68.1
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 9.9e-265 916.8 672 76.5
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 6.4e-264 914.1 672 76.0
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 1.2e-262 909.8 672 75.6
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 4.6e-262 907.9 680 74.7
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 1.0e-261 906.7 672 76.9
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 8.7e-261 903.7 672 76.8
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 1.9e-260 902.5 670 74.3
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 1.9e-260 902.5 673 75.5
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 4.3e-260 901.4 672 74.7
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 2.1e-259 899.0 670 74.0
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.8e-258 896.0 688 73.5
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 4.0e-258 894.8 672 74.4
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 6.9e-258 894.0 673 74.4
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 2.0e-257 892.5 670 73.7
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 2.0e-257 892.5 673 74.6
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 2.0e-257 892.5 672 75.1
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 2.6e-257 892.1 670 73.9
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.7e-256 889.4 675 73.0
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 2.2e-256 889.0 697 72.6
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 2.9e-256 888.6 670 74.0
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.4e-255 886.3 675 72.7
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 7.1e-255 884.0 670 73.4
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 1.2e-254 883.2 670 72.4
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 1.2e-254 883.2 670 72.4
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.3e-253 879.8 671 73.0
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 1.3e-253 879.8 710 71.7
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 1.5e-252 876.3 670 72.4
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 1.9e-252 875.9 671 73.5
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 1.9e-252 875.9 670 72.7
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 9.6e-252 873.6 673 74.7
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 1.1e-250 870.2 670 72.2
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 1.4e-250 869.8 670 71.9
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 2.4e-250 869.0 670 71.8
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 3.1e-250 868.6 670 71.9
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 4.0e-250 868.2 670 72.2
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 9.0e-250 867.1 669 71.7
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 1.1e-247 860.1 673 73.7
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 5.5e-247 857.8 714 68.1
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 9.3e-247 857.1 626 74.3
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 1.2e-246 856.7 672 70.7
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 1.8e-245 852.8 669 72.2
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 2.3e-245 852.4 688 72.1
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.3e-240 836.6 633 75.0
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 6.5e-240 834.3 672 71.4
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 8.4e-240 833.9 557 82.2
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 8.4e-240 833.9 669 71.7
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 1.1e-239 833.6 721 60.9
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 2.5e-239 832.4 670 70.1
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 5.5e-239 831.2 689 61.4
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 9.3e-239 830.5 667 71.5
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 1.2e-238 830.1 563 74.6
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 1.6e-238 829.7 672 70.7
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 5.9e-233 811.2 670 72.1
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 1.1e-231 807.0 630 74.4
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 4.3e-228 795.0 672 69.2
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 2.5e-223 779.2 667 68.7
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 1.3e-219 766.9 581 74.5
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 1.4e-218 763.5 672 65.0
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 4.1e-218 761.9 711 63.9
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 3.3e-212 742.3 571 67.1
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 4.7e-206 721.8 666 62.3
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 7.5e-164 581.6 558 57.0
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 2.9e-163 579.7 678 53.8
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 1.6e-158 563.9 681 53.3
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 6.4e-155 552.0 679 49.6
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 4.6e-153 545.8 442 67.0
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 6.0e-153 545.4 444 72.5
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 3.9e-152 542.7 397 66.8
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 4.4e-148 529.3 345 78.3
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 1.1e-143 514.6 572 54.7
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 2.0e-140 503.8 430 70.0
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 4.2e-114 416.4 670 45.2
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 9.4e-106 388.7 276 70.7
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 3.3e-103 380.2 376 58.5
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 5.9e-84 316.2 252 83.7
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.8e-64 251.5 157 70.7
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 2.3e-64 251.1 146 81.5
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 6.4e-62 243.0 206 58.7
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 9.5e-58 229.2 564 29.4
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 4.0e-56 223.8 560 31.1
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 5.8e-55 219.9 124 79.8
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 3.2e-53 214.2 658 30.2
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 9.2e-53 212.6 157 68.8
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 3.9e-51 207.2 239 64.4
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 3.3e-42 177.6 136 68.4
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 2.9e-38 164.5 254 59.8
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 5.4e-37 160.2 420 29.8
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 3.0e-35 154.5 102 80.4
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 4.2e-29 134.0 90 78.9
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 4.2e-29 134.0 90 78.9
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 1.6e-28 132.1 91 75.8
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 6.0e-28 130.2 94 73.4
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 1.9e-26 125.2 90 74.4
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 4.3e-26 124.0 104 56.7
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 3.6e-25 120.9 87 71.3
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 6.2e-25 120.2 85 67.1
SalBow6G1464 Salvia bowleyana HOM05D004755 ORTHO05D006137 1.1e-24 119.4 73 72.6
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 9.0e-24 116.3 106 57.5
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 9.9e-23 112.8 88 62.5
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 2.3e-19 101.7 89 59.6
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 8.7e-19 99.8 55 80.0
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 5.6e-18 97.1 69 72.5
CARHR099950 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.4e-16 92.4 73 60.3
CAN.G572.59 Capsicum annuum HOM05D000541 ORTHO05D000137 2.0e-15 88.6 124 44.4
SEGI_07035 Sequoiadendron giganteum HOM05D004755 ORTHO05D014145 1.0e-14 86.3 124 71.8
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 6.5e-14 83.6 90 46.7
CsaV3_2G000030 Cucumis sativus L. HOM05D004755 ORTHO05D006137 4.2e-13 80.9 46 80.4
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 9.3e-13 79.7 66 54.5
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 1.1e-10 72.8 270 29.6
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 4.3e-10 70.9 50 66.0
CARHR219250 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.2e-07 62.8 61 54.1
Gohir.D11G213250 Gossypium hirsutum HOM05D004755 ORTHO05D036105 4.5e-07 60.8 39 79.5
Gorai.007G229200 Gossypium raimondii HOM05D004755 ORTHO05D036105 4.5e-07 60.8 39 79.5
Cpa.g.sc62.109 Carica papaya HOM05D004755 ORTHO05D006137 5.8e-07 60.5 42 64.3
Gohir.A11G209850 Gossypium hirsutum HOM05D004755 ORTHO05D036105 7.6e-07 60.1 39 79.5


User provided reference genes

Program Settings