Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 6.8e-220 767.3 472 100.0
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 3.3e-150 535.8 415 74.0
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 6.3e-149 531.6 418 73.0
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 9.1e-148 527.7 417 72.9
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 5.9e-147 525.0 418 73.0
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 2.2e-146 523.1 424 72.6
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 2.9e-146 522.7 421 72.0
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 6.5e-146 521.5 417 73.4
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 2.3e-143 513.1 422 69.0
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 3.3e-142 509.2 414 69.6
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 8.2e-141 504.6 426 70.2
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 1.8e-140 503.4 417 72.2
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 1.8e-140 503.4 421 69.6
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.4e-140 503.1 418 71.5
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 2.4e-140 503.1 427 69.3
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 3.1e-140 502.7 421 69.6
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 9.1e-140 501.1 414 69.6
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 1.2e-139 500.7 424 68.4
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 4.5e-139 498.8 413 70.5
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 2.9e-138 496.1 417 71.2
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 3.8e-138 495.7 411 70.8
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 6.5e-138 495.0 418 66.3
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 1.9e-137 493.4 421 70.3
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 5.5e-137 491.9 419 66.1
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 1.2e-136 490.7 430 66.0
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 2.1e-136 490.0 427 67.0
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 4.0e-135 485.7 426 65.5
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 3.4e-134 482.6 332 78.3
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 5.7e-134 481.9 395 70.6
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 7.5e-134 481.5 416 68.3
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 9.8e-134 481.1 424 65.6
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 9.8e-134 481.1 429 69.0
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 2.8e-133 479.6 416 68.0
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.1e-132 477.6 452 64.2
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 2.4e-132 476.5 420 67.1
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 2.7e-131 473.0 429 67.1
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 5.9e-131 471.9 425 65.9
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.0e-130 471.1 419 64.0
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.3e-130 470.7 384 70.3
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 1.7e-130 470.3 336 75.0
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 2.5e-129 466.5 423 64.3
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 5.5e-129 465.3 424 66.3
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 9.5e-129 464.5 416 67.5
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 1.6e-128 463.8 467 59.5
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.6e-128 463.8 424 63.9
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 2.1e-128 463.4 414 68.8
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 8.0e-128 461.5 392 69.4
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 1.0e-127 461.1 422 65.9
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 1.0e-127 461.1 415 65.3
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.0e-127 461.1 343 72.9
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.8e-127 460.3 423 62.6
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 3.0e-127 459.5 383 72.1
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 8.9e-127 458.0 423 66.7
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 6.3e-125 451.8 444 62.4
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 8.3e-125 451.4 335 72.8
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 4.1e-124 449.1 418 65.6
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.0e-123 446.8 418 64.4
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.0e-122 444.5 404 68.6
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 2.9e-122 443.0 330 73.3
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 9.5e-121 438.0 420 65.0
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 4.7e-120 435.6 419 64.7
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 1.4e-119 434.1 334 71.3
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.0e-119 433.0 418 65.1
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 3.0e-119 433.0 438 58.9
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 4.0e-119 432.6 334 71.3
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 6.8e-119 431.8 379 69.4
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 6.8e-119 431.8 417 63.5
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.5e-118 430.6 379 69.4
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 3.4e-118 429.5 381 69.3
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 9.8e-118 427.9 419 66.6
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.9e-117 426.4 311 73.3
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.6e-115 420.6 641 48.0
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 1.6e-115 420.6 436 62.4
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 2.0e-115 420.2 437 61.1
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 3.5e-115 419.5 337 70.3
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 6.0e-115 418.7 367 68.7
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 1.0e-114 417.9 334 69.5
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 3.0e-114 416.4 418 61.0
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 5.0e-114 415.6 333 69.7
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 8.6e-114 414.8 394 64.2
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 7.3e-113 411.8 418 63.9
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 2.3e-111 406.8 375 66.4
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 2.3e-111 406.8 424 61.3
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 3.1e-111 406.4 337 68.5
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 5.2e-111 405.6 333 67.3
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 6.8e-111 405.2 375 65.9
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 3.4e-110 402.9 454 59.7
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 7.5e-110 401.7 422 58.1
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 5.1e-106 389.0 374 63.9
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 6.6e-106 388.7 343 65.3
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 4.3e-105 386.0 385 61.8
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 5.6e-105 385.6 278 75.5
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 7.3e-105 385.2 323 67.5
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 2.3e-103 380.2 323 66.9
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 7.5e-102 375.2 289 68.5
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 1.7e-101 374.0 406 58.1
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 1.4e-100 370.9 342 69.9
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 7.1e-100 368.6 322 65.2
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 1.1e-97 361.3 325 63.4
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 1.1e-97 361.3 325 63.4
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 1.9e-97 360.5 425 52.9
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 2.5e-97 360.1 416 53.6
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 3.3e-97 359.8 338 66.0
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 2.1e-96 357.1 414 53.6
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 2.6e-94 350.1 238 77.3
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 5.8e-94 349.0 350 62.0
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 3.2e-92 343.2 404 53.5
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 1.3e-90 337.8 360 60.8
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 1.2e-86 324.7 251 70.1
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 1.2e-83 314.7 417 52.3
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 3.3e-81 306.6 374 51.6
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 2.1e-80 303.9 417 50.8
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 7.6e-78 295.4 343 52.2
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 1.0e-74 285.0 393 51.4
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 1.2e-67 261.5 407 44.7
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.9e-65 254.2 366 45.4
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 1.2e-62 245.0 206 61.2
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.2e-59 235.0 227 56.4
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 1.1e-55 221.9 289 51.2
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 2.5e-52 210.7 351 40.7
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 3.7e-48 196.8 341 41.9
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 1.3e-45 188.3 199 59.3
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 7.4e-41 172.6 290 39.3
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 4.8e-40 169.9 183 61.2
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 7.5e-25 119.4 209 47.8
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 9.7e-25 119.0 231 47.2
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 5.3e-23 113.2 252 42.9
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 7.0e-23 112.8 68 80.9
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 9.8e-17 92.4 84 58.3
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 5.5e-12 76.6 255 25.9
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 1.2e-11 75.5 94 47.9
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 1.2e-11 75.5 94 47.9
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 3.0e-10 70.9 83 48.2
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 7.5e-09 66.2 347 24.8
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 3.7e-08 63.9 108 40.7
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 1.8e-07 61.6 95 44.2
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 2.0e-06 58.2 206 31.1


User provided reference genes

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