Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 0.0e+00 1314.3 950 100.0
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 9.3e-301 1036.9 957 81.7
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 3.7e-297 1025.0 969 77.2
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 7.4e-290 1000.7 993 65.2
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 1.1e-282 976.9 954 80.7
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 3.3e-282 975.3 951 77.9
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 1.4e-280 969.9 955 79.8
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.4e-280 969.1 934 78.8
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.2e-279 966.8 959 78.3
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 1.5e-279 966.5 952 78.9
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 7.7e-279 964.1 954 68.0
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 7.2e-277 957.6 932 78.4
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 1.4e-275 953.4 932 78.2
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 3.0e-275 952.2 933 78.1
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 3.9e-275 951.8 950 77.9
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 2.8e-273 945.7 952 77.4
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 4.1e-272 941.8 953 76.1
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 9.1e-272 940.6 954 77.3
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 6.5e-270 934.5 956 76.4
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 4.2e-269 931.8 937 76.9
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 2.7e-268 929.1 934 77.0
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 2.3e-267 926.0 953 75.2
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 1.1e-266 923.7 946 76.1
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 2.0e-266 922.9 959 77.1
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 2.0e-266 922.9 953 74.9
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 2.0e-266 922.9 939 74.0
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 4.4e-266 921.8 933 76.3
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 4.4e-266 921.8 939 75.7
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.8e-264 916.4 958 76.0
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 3.8e-262 908.7 958 75.9
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 5.0e-262 908.3 963 70.9
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.5e-262 907.9 938 76.4
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 1.5e-261 906.7 959 74.7
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 6.1e-260 901.4 927 74.8
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 6.1e-260 901.4 931 73.5
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 1.8e-259 899.8 958 75.5
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 2.3e-259 899.4 934 72.9
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 4.4e-258 895.2 953 75.4
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 2.2e-257 892.9 953 75.7
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 4.8e-257 891.7 934 74.0
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 4.1e-256 888.6 936 75.3
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 2.0e-255 886.3 941 74.8
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 5.9e-255 884.8 958 72.4
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 5.9e-255 884.8 934 73.7
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 1.3e-254 883.6 943 72.7
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 3.8e-254 882.1 1126 65.9
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 5.0e-254 881.7 737 79.4
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 6.5e-254 881.3 963 72.3
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 6.5e-254 881.3 943 74.0
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 8.5e-254 880.9 933 63.3
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 1.1e-253 880.6 943 74.0
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.5e-253 880.2 956 71.9
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 4.2e-253 878.6 951 74.8
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 9.4e-253 877.5 943 73.9
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 1.4e-251 873.6 946 73.6
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 2.6e-250 869.4 978 61.2
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 1.7e-249 866.7 943 74.0
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 4.8e-249 865.1 957 72.2
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.8e-248 863.2 957 72.0
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.1e-248 862.4 957 71.9
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 4.1e-248 862.1 943 73.7
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 9.1e-248 860.9 957 71.9
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 1.2e-247 860.5 962 72.5
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 1.6e-247 860.1 953 66.5
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 2.7e-247 859.4 934 72.3
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.7e-246 856.7 957 72.0
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 5.0e-246 855.1 936 65.3
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 6.5e-246 854.7 935 72.3
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 5.5e-245 851.7 983 70.9
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 9.4e-245 850.9 943 73.1
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 2.7e-244 849.4 935 69.9
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 8.8e-243 844.3 936 72.4
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.5e-242 843.6 963 68.6
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 2.6e-242 842.8 943 72.6
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.4e-240 837.0 953 73.0
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 3.1e-240 835.9 961 73.3
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 7.0e-240 834.7 934 71.6
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 7.0e-240 834.7 954 74.0
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 2.7e-239 832.8 931 69.4
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 2.3e-238 829.7 935 69.9
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 6.6e-238 828.2 935 71.4
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 1.6e-236 823.5 938 69.3
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 2.1e-236 823.2 950 70.7
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.8e-236 822.8 941 73.0
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 3.6e-236 822.4 949 71.5
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 8.0e-236 821.2 958 71.3
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 1.8e-235 820.1 957 60.5
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 4.0e-235 818.9 949 71.3
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 9.8e-234 814.3 949 71.1
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 2.2e-233 813.1 816 80.1
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 1.4e-232 810.4 949 71.0
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 5.9e-231 805.1 951 70.8
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 1.5e-229 800.4 965 48.8
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.9e-229 800.0 937 70.4
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 7.8e-223 778.1 953 67.6
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 4.0e-219 765.8 936 66.0
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 2.3e-214 750.0 885 70.1
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 9.9e-210 734.6 937 64.2
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 1.7e-206 723.8 1027 59.9
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 5.2e-203 712.2 940 65.0
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 7.6e-202 708.4 857 71.4
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 6.4e-185 652.1 710 65.8
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 1.1e-184 651.4 934 60.7
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 5.4e-184 649.0 865 65.4
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 1.6e-180 637.5 946 54.4
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 7.9e-167 592.0 942 57.6
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 5.7e-157 559.3 931 57.3
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 3.7e-156 556.6 951 55.0
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 3.7e-156 556.6 951 55.0
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 1.6e-151 541.2 933 55.8
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 7.0e-147 525.8 970 57.3
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.4e-134 485.0 647 45.9
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.4e-115 421.8 598 58.9
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 3.3e-104 384.0 937 48.5
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 9.5e-96 355.9 299 63.5
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 1.2e-93 349.0 950 42.0
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 3.5e-90 337.4 591 39.3
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 2.5e-72 278.1 730 43.0
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.2e-51 208.0 183 56.8
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.2e-45 189.5 135 66.7
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 1.4e-43 182.6 127 67.7
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 2.6e-40 171.8 124 64.5
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.2e-39 168.7 199 48.2
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 2.1e-34 152.1 123 58.5
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 1.0e-33 149.8 118 65.3
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 2.8e-31 141.7 119 56.3
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 8.5e-28 130.2 81 81.5
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 1.1e-27 129.8 136 51.5
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 1.0e-25 123.2 77 79.2
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 3.1e-22 111.7 80 70.0
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.6e-18 99.4 82 61.0
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.6e-18 98.2 80 58.8
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 4.0e-17 94.7 66 72.7
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 4.0e-17 94.7 88 47.7
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.8e-15 88.6 91 62.6
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 8.3e-15 87.0 83 59.0
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.5e-13 81.6 103 50.5
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 2.5e-11 75.5 52 73.1
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 7.5e-08 63.9 178 30.3
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 3.7e-07 61.6 167 28.1
Lj4A288G22 Lonicera japonica HOM05D005151 ORTHO05D006322 3.7e-07 61.6 178 29.8
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 3.7e-07 61.6 52 59.6
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 4.9e-07 61.2 58 53.4
HanXRQChr03g0063021 Helianthus annuus HOM05D005151 ORTHO05D006322 4.9e-07 61.2 185 28.6
Solyc09g018520.1 Solanum lycopersicum HOM05D005316 ORTHO05D006495 6.3e-07 60.8 81 43.2
Nitab4.5_0001599g0030 Nicotiana tabacum HOM05D003769 ORTHO05D004521 8.3e-07 60.5 143 29.4
Oeu047676.1 Olea europaea HOM05D000645 ORTHO05D000494 8.3e-07 60.5 160 30.0
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 1.1e-06 60.1 185 28.6
MD15G1212600 Malus domestica HOM05D005151 ORTHO05D006322 1.1e-06 60.1 191 30.4
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 1.4e-06 59.7 136 26.5
CiPaw.01G122500 Carya illinoinensis HOM05D000836 ORTHO05D000709 1.4e-06 59.7 146 26.0
BcaB01g03760 Brassica carinata HOM05D000526 ORTHO05D000956 1.8e-06 59.3 145 25.5
MD02G1085500 Malus domestica HOM05D005151 ORTHO05D006322 2.4e-06 58.9 184 29.9
Pp3c2_28090 Physcomitrium patens HOM05D005151 ORTHO05D006322 2.4e-06 58.9 185 29.7
Pp3c2_28110 Physcomitrium patens HOM05D005151 ORTHO05D006322 2.4e-06 58.9 185 29.7
Prupe.6G180900 Prunus persica HOM05D005151 ORTHO05D006322 4.1e-06 58.2 184 30.4
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 5.4e-06 57.8 116 31.9
ECA240G1097 Erigeron canadensis HOM05D005151 ORTHO05D006322 5.4e-06 57.8 178 28.7
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 7.0e-06 57.4 162 26.5
Peaxi162Scf00498g00525 Petunia axillaris HOM05D005151 ORTHO05D006322 7.0e-06 57.4 186 29.0


User provided reference genes

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