Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018346 Daucus carota HOM05D002721 ORTHO05D002919 8.9e-78 293.5 145 100.0
DCAR_018347 Daucus carota HOM05D002721 ORTHO05D002919 1.7e-76 289.3 145 99.3
DCAR_019804 Daucus carota HOM05D002721 ORTHO05D002919 9.2e-51 203.8 102 100.0
DCAR_031197 Daucus carota HOM05D002721 ORTHO05D002919 3.6e-47 191.8 102 94.1
DCAR_026695 Daucus carota HOM05D002721 ORTHO05D002919 3.4e-45 185.3 106 90.6
Lj6A772G33 Lonicera japonica HOM05D002721 ORTHO05D002919 4.3e-24 115.2 94 62.8
Actinidia13414 Actinidia chinensis HOM05D002721 ORTHO05D002919 4.2e-19 98.6 110 53.6
Dinv15572 Davidia involucrata HOM05D002721 ORTHO05D002919 6.7e-17 91.3 104 52.9
TAR629G3028 Trochodendron aralioides HOM05D002721 ORTHO05D002919 4.3e-16 88.6 98 55.1
CSS0049515 Camellia sinensis var. sinensis HOM05D002721 ORTHO05D002919 2.8e-15 85.9 114 48.2
Rhsim09G0119600 Rhododendron simsii HOM05D002721 ORTHO05D002919 2.8e-15 85.9 99 54.5
Dinv33997 Davidia involucrata HOM05D002721 ORTHO05D002919 3.7e-15 85.5 96 55.2
ECA234G4745 Erigeron canadensis HOM05D002721 ORTHO05D002919 4.8e-15 85.1 74 51.4
vmacro10459 Vaccinium macrocarpon HOM05D002721 ORTHO05D002919 5.3e-14 81.6 127 42.5
GSVIVG01010127001 Vitis vinifera HOM05D002721 ORTHO05D002919 6.9e-14 81.3 81 56.8
Nitab4.5_0000259g0010 Nicotiana tabacum HOM05D002721 ORTHO05D002919 9.0e-14 80.9 97 49.5
Nitab4.5_0006377g0010 Nicotiana tabacum HOM05D002721 ORTHO05D002919 2.0e-13 79.7 97 48.5
TAR371G1157 Trochodendron aralioides HOM05D002721 ORTHO05D002919 7.7e-13 77.8 96 51.0
Haze_14356 Corylus avellana HOM05D002721 ORTHO05D002919 2.2e-12 76.3 100 48.0
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 2.2e-12 76.3 100 50.0
CAN.G182.5 Capsicum annuum HOM05D002721 ORTHO05D002919 3.8e-12 75.5 97 50.5
TWI75G0211 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 3.8e-12 75.5 80 46.2
PGSC0003DMG400019651 Solanum tuberosum HOM05D002721 ORTHO05D002919 8.5e-12 74.3 98 50.0
CANSAT64G2265 Cannabis sativa HOM05D002721 ORTHO05D002919 1.1e-11 73.9 110 45.5
Cfa007718 Carpinus fangiana HOM05D002721 ORTHO05D002919 1.1e-11 73.9 73 57.5
MBI15_g42002_MAGBIO Magnolia biondii HOM05D002721 ORTHO05D002919 1.4e-11 73.6 69 56.5
CANSAT64G0632 Cannabis sativa HOM05D002721 ORTHO05D002919 1.9e-11 73.2 93 47.3
Solyc05g010590.4 Solanum lycopersicum HOM05D002721 ORTHO05D002919 2.5e-11 72.8 85 49.4
Aqoxy3G00575 Aquilegia oxysepala HOM05D002721 ORTHO05D002919 4.2e-11 72.0 69 58.0
GSVIVG01036512001 Vitis vinifera HOM05D002721 ORTHO05D002919 4.2e-11 72.0 102 45.1
Sopen05g006410 Solanum pennellii HOM05D002721 ORTHO05D002919 5.5e-11 71.6 85 48.2
Cfa008829 Carpinus fangiana HOM05D002721 ORTHO05D002919 9.4e-11 70.9 101 43.6
Sabra10G0104500 Salix brachista HOM05D002721 ORTHO05D002919 9.4e-11 70.9 84 51.2
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 1.2e-10 70.5 100 47.0
Sed0019837 Sechium edule HOM05D002721 ORTHO05D002919 1.2e-10 70.5 92 44.6
Peaxi162Scf00188g00812 Petunia axillaris HOM05D002721 ORTHO05D002919 1.6e-10 70.1 97 47.4
Haze_11843 Corylus avellana HOM05D002721 ORTHO05D002919 2.1e-10 69.7 101 42.6
Cc11_g11350 Coffea canephora HOM05D002721 ORTHO05D002919 2.7e-10 69.3 96 43.8
CsaV3_5G018810 Cucumis sativus L. HOM05D002721 ORTHO05D002919 2.7e-10 69.3 126 35.7
ATR0691G037 Amborella trichopoda HOM05D002721 ORTHO05D002919 3.6e-10 68.9 90 44.4
Rhsim08G0078700 Rhododendron simsii HOM05D002721 ORTHO05D002919 3.6e-10 68.9 71 53.5
AL2G27940 Arabidopsis lyrata HOM05D002721 ORTHO05D002919 4.6e-10 68.6 86 41.9
Cpa.g.c34209.1 Carica papaya HOM05D002721 ORTHO05D002919 4.6e-10 68.6 73 50.7
Hma1.2p1_1348F.1_g277310 Hydrangea macrophylla HOM05D002721 ORTHO05D002919 4.6e-10 68.6 104 41.3
CSS0034394 Camellia sinensis var. sinensis HOM05D002721 ORTHO05D002919 6.1e-10 68.2 71 56.3
Hma1.2p1_0588F.1_g184620 Hydrangea macrophylla HOM05D002721 ORTHO05D002919 6.1e-10 68.2 100 44.0
Cpa.g.sc570.3 Carica papaya HOM05D002721 ORTHO05D002919 7.9e-10 67.8 74 48.6
QL02p063553 Quercus lobata HOM05D002721 ORTHO05D002919 7.9e-10 67.8 100 45.0
Cpa.g.sc1414.3 Carica papaya HOM05D002721 ORTHO05D002919 1.0e-09 67.4 73 49.3
Thhalv10018242m.g Eutrema salsugineum HOM05D002721 ORTHO05D002919 1.0e-09 67.4 74 41.9
Gohir.A12G056901 Gossypium hirsutum HOM05D002721 ORTHO05D002919 1.0e-09 67.4 69 53.6
Oeu062192.1 Olea europaea HOM05D002721 ORTHO05D002919 1.0e-09 67.4 93 44.1
CARHR061780 Cardamine hirsuta HOM05D002721 ORTHO05D002919 1.4e-09 67.0 64 46.9
ClCG07G016160 Citrullus lanatus HOM05D002721 ORTHO05D002919 1.4e-09 67.0 92 43.5
Nitab4.5_0003203g0020 Nicotiana tabacum HOM05D002721 ORTHO05D002919 1.4e-09 67.0 77 48.1
Potri.010G135900 Populus trichocarpa HOM05D002721 ORTHO05D002919 1.4e-09 67.0 107 46.7
CAN.G93.45 Capsicum annuum HOM05D002721 ORTHO05D002919 1.8e-09 66.6 112 43.8
CiPaw.03G080900 Carya illinoinensis HOM05D002721 ORTHO05D002919 1.8e-09 66.6 73 54.8
Dinv34891 Davidia involucrata HOM05D002721 ORTHO05D002919 1.8e-09 66.6 75 50.7
Gorai.008G059400 Gossypium raimondii HOM05D002721 ORTHO05D002919 1.8e-09 66.6 69 53.6
Nitab4.5_0002249g0070 Nicotiana tabacum HOM05D002721 ORTHO05D002919 1.8e-09 66.6 79 46.8
QL03p073121 Quercus lobata HOM05D002721 ORTHO05D002919 1.8e-09 66.6 102 42.2
PSO063G3792 Papaver somniferum HOM05D002721 ORTHO05D002919 2.3e-09 66.2 100 43.0
Prupe.3G246700 Prunus persica HOM05D002721 ORTHO05D002919 2.3e-09 66.2 99 43.4
PGSC0003DMG400026559 Solanum tuberosum HOM05D002721 ORTHO05D002919 2.3e-09 66.2 92 44.6
Thecc.02G319900 Theobroma cacao HOM05D002721 ORTHO05D002919 2.3e-09 66.2 104 41.3
Atru.chr8.683 Acer truncatum HOM05D002721 ORTHO05D002919 3.0e-09 65.9 75 52.0
Carub.0002s1555 Capsella rubella HOM05D002721 ORTHO05D002919 3.0e-09 65.9 91 38.5
Cc07_g04670 Coffea canephora HOM05D002721 ORTHO05D002919 3.0e-09 65.9 90 48.9
COL.COLO4_25875 Corchorus olitorius HOM05D002721 ORTHO05D002919 3.0e-09 65.9 112 41.1
Sc10g0000490 Simmondsia chinensis HOM05D002721 ORTHO05D002919 3.0e-09 65.9 104 43.3
C02p25600 Brassica napus HOM05D002721 ORTHO05D002919 3.9e-09 65.5 61 49.2
BolC2t08623H Brassica oleracea HOM05D002721 ORTHO05D002919 3.9e-09 65.5 61 49.2
PSO782G5409 Papaver somniferum HOM05D002721 ORTHO05D002919 3.9e-09 65.5 76 47.4
Sabra04G0073100 Salix brachista HOM05D002721 ORTHO05D002919 3.9e-09 65.5 91 47.3
ClCG01G007340 Citrullus lanatus HOM05D002721 ORTHO05D002919 5.1e-09 65.1 133 30.8
MELO3C018912.2 Cucumis melo HOM05D002721 ORTHO05D002919 5.1e-09 65.1 92 41.3
Sopen02g015870 Solanum pennellii HOM05D002721 ORTHO05D002919 5.1e-09 65.1 89 44.9
AT1G68910 Arabidopsis thaliana HOM05D002721 ORTHO05D002919 6.7e-09 64.7 87 40.2
MELO3C005176.2 Cucumis melo HOM05D002721 ORTHO05D002919 6.7e-09 64.7 98 40.8
FAN22G0742 Fragaria x ananassa HOM05D002721 ORTHO05D002919 8.8e-09 64.3 91 41.8
Aqoxy3G03780 Aquilegia oxysepala HOM05D002721 ORTHO05D002919 1.1e-08 63.9 102 42.2
Migut.H00573 Erythranthe guttata HOM05D002721 ORTHO05D002919 1.1e-08 63.9 92 46.7
MBI14_g08213_MAGBIO Magnolia biondii HOM05D002721 ORTHO05D002919 1.5e-08 63.5 96 42.7
PGR042G0929 Punica granatum HOM05D002721 ORTHO05D002919 1.5e-08 63.5 74 50.0
Sed0004629 Sechium edule HOM05D002721 ORTHO05D002919 1.5e-08 63.5 129 32.6
A02p15490 Brassica napus HOM05D002721 ORTHO05D002919 2.0e-08 63.2 61 47.5
BraA02t06610Z Brassica rapa HOM05D002721 ORTHO05D002919 2.0e-08 63.2 89 38.2
Duzib211G0355 Durio zibethinus HOM05D002721 ORTHO05D002919 2.0e-08 63.2 104 41.3
FvH4_4g28890 Fragaria vesca HOM05D002721 ORTHO05D002919 2.0e-08 63.2 91 40.7
FAN12G1937 Fragaria x ananassa HOM05D002721 ORTHO05D002919 2.0e-08 63.2 91 40.7
Lj4P127T26 Lonicera japonica HOM05D002721 ORTHO05D002919 2.0e-08 63.2 71 50.7
MD17G1067700 Malus domestica HOM05D002721 ORTHO05D002919 2.0e-08 63.2 65 56.9
Potri.017G106400 Populus trichocarpa HOM05D002721 ORTHO05D002919 2.0e-08 63.2 62 56.5
vmacro18116 Vaccinium macrocarpon HOM05D002721 ORTHO05D002919 2.0e-08 63.2 78 50.0
A07p35320 Brassica napus HOM05D002721 ORTHO05D002919 2.5e-08 62.8 80 41.2
Eucgr.G02406 Eucalyptus grandis HOM05D002721 ORTHO05D002919 2.5e-08 62.8 70 50.0
FAN07G0888 Fragaria x ananassa HOM05D002721 ORTHO05D002919 2.5e-08 62.8 95 40.0
RcHm_v2.0_Chr4g0437011 Rosa chinensis HOM05D002721 ORTHO05D002919 2.5e-08 62.8 70 48.6
Dinv33882 Davidia involucrata HOM05D002721 ORTHO05D002919 3.3e-08 62.4 75 49.3
MD16G1053400 Malus domestica HOM05D002721 ORTHO05D002919 3.3e-08 62.4 98 38.8
Peaxi162Scf00019g00315 Petunia axillaris HOM05D002721 ORTHO05D002919 3.3e-08 62.4 100 42.0
Thecc.04G110800 Theobroma cacao HOM05D002721 ORTHO05D002919 3.3e-08 62.4 112 42.9
MSTRG.2964 Avicennia marina HOM05D002721 ORTHO05D002919 4.3e-08 62.0 70 51.4
BolC6t39341H Brassica oleracea HOM05D002721 ORTHO05D002919 4.3e-08 62.0 80 40.0
Duzib251G0850 Durio zibethinus HOM05D002721 ORTHO05D002919 4.3e-08 62.0 116 39.7
FAN17G0692 Fragaria x ananassa HOM05D002721 ORTHO05D002919 4.3e-08 62.0 91 40.7
Gohir.D13G086700 Gossypium hirsutum HOM05D002721 ORTHO05D002919 4.3e-08 62.0 110 39.1
Gorai.013G098800 Gossypium raimondii HOM05D002721 ORTHO05D002919 4.3e-08 62.0 105 39.0
MD13G1054600 Malus domestica HOM05D002721 ORTHO05D002919 4.3e-08 62.0 70 48.6
TWI32G1231 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 4.3e-08 62.0 91 45.1
BraA07t31125Z Brassica rapa HOM05D002721 ORTHO05D002919 7.4e-08 61.2 80 40.0
Oeu007095.1 Olea europaea HOM05D002721 ORTHO05D002919 7.4e-08 61.2 97 44.3
BcaC08g46345 Brassica carinata HOM05D002721 ORTHO05D002919 9.7e-08 60.8 102 35.3
C06p40920 Brassica napus HOM05D002721 ORTHO05D002919 9.7e-08 60.8 102 35.3
Duzib248G1050 Durio zibethinus HOM05D002721 ORTHO05D002919 9.7e-08 60.8 104 41.3
Lalb_Chr21g0318111 Lupinus albus HOM05D002721 ORTHO05D002919 9.7e-08 60.8 67 49.3
RcHm_v2.0_Chr2g0164391 Rosa chinensis HOM05D002721 ORTHO05D002919 9.7e-08 60.8 104 40.4
Aa31sc12G170 Aethionema arabicum HOM05D002721 ORTHO05D002919 1.3e-07 60.5 83 41.0
Ciclev10011306m.g Citrus clementina HOM05D002721 ORTHO05D002919 1.3e-07 60.5 101 42.6
THA.LOC104823876 Tarenaya hassleriana HOM05D002721 ORTHO05D002919 1.3e-07 60.5 92 40.2
arahy.Tifrunner.gnm1.ann1.EIW9IC Arachis hypogaea HOM05D002721 ORTHO05D002919 1.7e-07 60.1 97 41.2
Sabra17G0089400 Salix brachista HOM05D002721 ORTHO05D002919 2.2e-07 59.7 93 45.2
HPP92_027783 Vanilla planifolia HOM05D002721 ORTHO05D002919 2.2e-07 59.7 72 48.6
Prupe.1G297300 Prunus persica HOM05D002721 ORTHO05D002919 2.8e-07 59.3 96 38.5
THA.LOC104805537 Tarenaya hassleriana HOM05D002721 ORTHO05D002919 3.7e-07 58.9 92 38.0
arahy.Tifrunner.gnm1.ann1.B0WRJ9 Arachis hypogaea HOM05D002721 ORTHO05D002919 4.8e-07 58.5 97 41.2
SGA_v2.0_scaffold4G02351 Striga asiatica HOM05D002721 ORTHO05D002919 4.8e-07 58.5 91 38.5
Ah.10g038340 Amaranthus hybridus HOM05D002721 ORTHO05D002919 6.3e-07 58.2 66 48.5
BcaB05g24431 Brassica carinata HOM05D002721 ORTHO05D002919 6.3e-07 58.2 61 45.9
Sp5g24050 Schrenkiella parvula HOM05D002721 ORTHO05D002919 6.3e-07 58.2 64 42.2
TWI34G0100 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 6.3e-07 58.2 99 41.4
BcaB03g15864 Brassica carinata HOM05D002721 ORTHO05D002919 8.2e-07 57.8 62 45.2
Lj2g0017371 Lotus japonicus HOM05D002721 ORTHO05D002919 8.2e-07 57.8 95 41.1
Oeu033419.1 Olea europaea HOM05D002721 ORTHO05D002919 8.2e-07 57.8 92 44.6
Lj1g0012113 Lotus japonicus HOM05D002721 ORTHO05D002919 1.1e-06 57.4 75 45.3
Lalb_Chr10g0099321 Lupinus albus HOM05D002721 ORTHO05D002919 1.1e-06 57.4 84 45.2
FvH4_6g46070 Fragaria vesca HOM05D002721 ORTHO05D002919 1.4e-06 57.0 103 36.9
FAN05G4529 Fragaria x ananassa HOM05D002721 ORTHO05D002919 1.4e-06 57.0 104 37.5
FAN14G2371 Fragaria x ananassa HOM05D000717 ORTHO05D000555 1.4e-06 57.0 103 36.9
Phvul.002G083200 Phaseolus vulgaris HOM05D002721 ORTHO05D002919 1.4e-06 57.0 105 38.1
RcHm_v2.0_Chr6g0275231 Rosa chinensis HOM05D002721 ORTHO05D002919 1.4e-06 57.0 101 38.6
Migut.L01147 Erythranthe guttata HOM05D002721 ORTHO05D002919 1.8e-06 56.6 89 38.2
unitig_52.g17630 Utricularia gibba HOM05D002721 ORTHO05D002919 1.8e-06 56.6 69 47.8
AUR62009452 Chenopodium quinoa HOM05D002721 ORTHO05D002919 2.4e-06 56.2 115 33.9
CsaV3_4G009900 Cucumis sativus L. HOM05D002721 ORTHO05D002919 2.4e-06 56.2 92 38.0
TPR.G2672 Trifolium pratense HOM05D002721 ORTHO05D002919 2.4e-06 56.2 94 39.4
COL.COLO4_27771 Corchorus olitorius HOM05D002721 ORTHO05D002919 3.1e-06 55.8 65 46.2
Manes.01G105100 Manihot esculenta HOM05D002721 ORTHO05D002919 3.1e-06 55.8 67 52.2
Aa31LG3G15810 Aethionema arabicum HOM05D002721 ORTHO05D002919 4.1e-06 55.5 88 44.3
ECA238G2894 Erigeron canadensis HOM05D002721 ORTHO05D002919 5.3e-06 55.1 87 40.2
Ca_05183_v3 Cicer arietinum L. HOM05D002721 ORTHO05D002919 6.9e-06 54.7 107 36.4
SpUn0004_0110 Schrenkiella parvula HOM05D006786 ORTHO05D008901 6.9e-06 54.7 64 43.8
MD09G1077300 Malus domestica HOM05D002721 ORTHO05D002919 9.1e-06 54.3 105 39.0
Oeu054586.2 Olea europaea HOM05D002721 ORTHO05D002919 9.1e-06 54.3 79 38.0


User provided reference genes

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