Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018345 Daucus carota HOM05D019387 ORTHO05D176751 6.5e-210 733.8 369 100.0
DCAR_024715 Daucus carota HOM05D019387 ORTHO05D176223 3.4e-142 508.8 316 83.9
DCAR_031196 Daucus carota HOM05D019387 ORTHO05D177183 1.5e-57 227.6 204 64.2
DCAR_007009 Daucus carota HOM05D000577 ORTHO05D003389 5.1e-13 79.7 41 92.7
DCAR_019804 Daucus carota HOM05D002721 ORTHO05D002919 3.7e-11 73.6 36 100.0
DCAR_031189 Daucus carota HOM05D000577 ORTHO05D003389 4.1e-10 70.1 40 82.5
DCAR_000978 Daucus carota HOM05D019387 ORTHO05D015371 6.9e-10 69.3 164 34.1
DCAR_022417 Daucus carota HOM05D019387 ORTHO05D015371 9.0e-10 68.9 97 43.3
DCAR_013926 Daucus carota HOM05D000564 ORTHO05D002780 1.2e-09 68.6 38 86.8
DCAR_020043 Daucus carota HOM05D000819 ORTHO05D000661 5.9e-09 66.2 98 43.9
Rhsim06G0006500 Rhododendron simsii HOM05D000564 ORTHO05D002780 5.9e-09 66.2 53 67.9
Cc10_g00550 Coffea canephora HOM05D000564 ORTHO05D002780 7.7e-09 65.9 37 83.8
CSS0016071 Camellia sinensis var. sinensis HOM05D000577 ORTHO05D003389 1.0e-08 65.5 55 54.5
DCAR_005233 Daucus carota HOM05D000577 ORTHO05D003389 2.2e-08 64.3 33 87.9
TPR.G38096 Trifolium pratense HOM05D000564 ORTHO05D002780 2.2e-08 64.3 44 70.5
Actinidia15499 Actinidia chinensis HOM05D000564 ORTHO05D002780 2.9e-08 63.9 37 83.8
Lj4C806T13 Lonicera japonica HOM05D000564 ORTHO05D002780 2.9e-08 63.9 37 83.8
Peaxi162Scf00711g00211 Petunia axillaris HOM05D000564 ORTHO05D002780 2.9e-08 63.9 44 68.2
SalBow7G2064 Salvia bowleyana HOM05D000564 ORTHO05D002780 3.8e-08 63.5 37 81.1
Duzib093G0382 Durio zibethinus HOM05D000564 ORTHO05D002780 5.0e-08 63.2 37 78.4
Hma1.2p1_3090F.1_g332520 Hydrangea macrophylla HOM05D000577 ORTHO05D003389 5.0e-08 63.2 41 68.3
arahy.Tifrunner.gnm1.ann1.7A0A2P Arachis hypogaea HOM05D000564 ORTHO05D002780 6.5e-08 62.8 37 78.4
arahy.Tifrunner.gnm1.ann1.TAF7VU Arachis hypogaea HOM05D000564 ORTHO05D002780 6.5e-08 62.8 37 78.4
Eucgr.F01780 Eucalyptus grandis HOM05D000564 ORTHO05D002780 6.5e-08 62.8 37 78.4
Lj1g0023322 Lotus japonicus HOM05D000564 ORTHO05D002780 6.5e-08 62.8 37 78.4
Lalb_Chr08g0246461 Lupinus albus HOM05D000564 ORTHO05D002780 6.5e-08 62.8 37 78.4
Oeu026509.1 Olea europaea HOM05D000564 ORTHO05D002780 6.5e-08 62.8 37 78.4
PGR083G1740 Punica granatum HOM05D000564 ORTHO05D002780 6.5e-08 62.8 37 81.1
Actinidia17048 Actinidia chinensis HOM05D000564 ORTHO05D002780 8.5e-08 62.4 37 81.1
CSS0002623 Camellia sinensis var. sinensis HOM05D000564 ORTHO05D002780 8.5e-08 62.4 37 78.4
DCAR_004153 Daucus carota HOM05D019387 ORTHO05D015371 8.5e-08 62.4 55 58.2
Nitab4.5_0004470g0030 Nicotiana tabacum HOM05D000564 ORTHO05D002780 8.5e-08 62.4 44 65.9
CANSAT25G2553 Cannabis sativa HOM05D000564 ORTHO05D002780 1.1e-07 62.0 53 60.4
Ciclev10000039m.g Citrus clementina HOM05D000564 ORTHO05D002780 1.1e-07 62.0 37 75.7
Dinv31954 Davidia involucrata HOM05D000564 ORTHO05D002780 1.1e-07 62.0 41 70.7
TWI56G0100 Tripterygium wilfordii HOM05D000564 ORTHO05D002780 1.1e-07 62.0 52 63.5
ATR0807G132 Amborella trichopoda HOM05D000564 ORTHO05D002780 1.4e-07 61.6 37 81.1
CSS0007243 Camellia sinensis var. sinensis HOM05D000564 ORTHO05D002780 1.4e-07 61.6 37 75.7
CSS0038810 Camellia sinensis var. sinensis HOM05D000577 ORTHO05D003389 1.4e-07 61.6 41 65.9
Dinv10976 Davidia involucrata HOM05D000577 ORTHO05D003389 1.4e-07 61.6 38 73.7
Dinv41875 Davidia involucrata HOM05D000564 ORTHO05D002780 1.4e-07 61.6 37 73.0
ECA246G4510 Erigeron canadensis HOM05D000577 ORTHO05D003389 1.4e-07 61.6 40 65.0
Glyma.04G017300 Glycine max HOM05D000564 ORTHO05D002780 1.4e-07 61.6 37 78.4
Glyma.06G017700 Glycine max HOM05D000564 ORTHO05D002780 1.4e-07 61.6 37 78.4
Thecc.08G060400 Theobroma cacao HOM05D000564 ORTHO05D002780 1.4e-07 61.6 37 73.0
TAR628G0472 Trochodendron aralioides HOM05D000564 ORTHO05D002780 1.4e-07 61.6 37 75.7
MSTRG.24928 Avicennia marina HOM05D000564 ORTHO05D002780 1.9e-07 61.2 37 75.7
Cfa014096 Carpinus fangiana HOM05D000564 ORTHO05D002780 1.9e-07 61.2 37 78.4
CiPaw.07G137500 Carya illinoinensis HOM05D000564 ORTHO05D002780 1.9e-07 61.2 37 78.4
Dinv14815 Davidia involucrata HOM05D000577 ORTHO05D003389 1.9e-07 61.2 75 45.3
Lj5A172G81 Lonicera japonica HOM05D000564 ORTHO05D002780 1.9e-07 61.2 38 73.7
Lalb_Chr23g0265741 Lupinus albus HOM05D000564 ORTHO05D002780 1.9e-07 61.2 37 78.4
Ca_15428_v3 Cicer arietinum L. HOM05D000564 ORTHO05D002780 2.5e-07 60.8 37 75.7
COL.COLO4_17925 Corchorus olitorius HOM05D000564 ORTHO05D002780 2.5e-07 60.8 37 75.7
Haze_22802 Corylus avellana HOM05D000564 ORTHO05D002780 2.5e-07 60.8 41 70.7
Migut.C00393 Erythranthe guttata HOM05D000564 ORTHO05D002780 2.5e-07 60.8 37 73.0
Manes.05G130900 Manihot esculenta HOM05D000564 ORTHO05D002780 2.5e-07 60.8 34 79.4
SGA_v2.0_scaffold587G53060 Striga asiatica HOM05D000564 ORTHO05D002780 2.5e-07 60.8 37 73.0
TAR381G0938 Trochodendron aralioides HOM05D000564 ORTHO05D002780 2.5e-07 60.8 37 73.0
GSVIVG01013373001 Vitis vinifera HOM05D000564 ORTHO05D002780 2.5e-07 60.8 37 75.7
Phvul.009G011300 Phaseolus vulgaris HOM05D000564 ORTHO05D002780 3.2e-07 60.5 37 75.7
QL11p055968 Quercus lobata HOM05D000564 ORTHO05D002780 3.2e-07 60.5 37 73.0
unitig_747.g21540 Utricularia gibba HOM05D000564 ORTHO05D002780 3.2e-07 60.5 37 78.4
VMungo1309G2497 Vigna mungo HOM05D000564 ORTHO05D002780 3.2e-07 60.5 37 75.7
Aqoxy6G01639 Aquilegia oxysepala HOM05D000564 ORTHO05D002780 4.2e-07 60.1 37 75.7
AUR62040814 Chenopodium quinoa HOM05D000564 ORTHO05D002780 4.2e-07 60.1 37 75.7
Ca_06501_v3 Cicer arietinum L. HOM05D000564 ORTHO05D002780 4.2e-07 60.1 34 79.4
Gohir.A01G104800 Gossypium hirsutum HOM05D000564 ORTHO05D002780 4.2e-07 60.1 37 70.3
Gohir.D01G090000 Gossypium hirsutum HOM05D000564 ORTHO05D002780 4.2e-07 60.1 37 70.3
Gohir.D01G166300 Gossypium hirsutum HOM05D000564 ORTHO05D002780 4.2e-07 60.1 37 75.7
Gorai.002G115700 Gossypium raimondii HOM05D000564 ORTHO05D002780 4.2e-07 60.1 37 70.3
Gorai.002G206800 Gossypium raimondii HOM05D000564 ORTHO05D002780 4.2e-07 60.1 37 75.7
Phvul.008G291900 Phaseolus vulgaris HOM05D000564 ORTHO05D002780 4.2e-07 60.1 34 76.5
Atru.chr5.3545 Acer truncatum HOM05D000564 ORTHO05D002780 5.5e-07 59.7 41 63.4
Cpa.g.sc20.214 Carica papaya HOM05D000564 ORTHO05D002780 5.5e-07 59.7 37 73.0
Duzib041G0747 Durio zibethinus HOM05D000564 ORTHO05D002780 5.5e-07 59.7 37 70.3
Lj3A1066G67 Lonicera japonica HOM05D000577 ORTHO05D003389 5.5e-07 59.7 42 57.1
LjContig00081g0019328 Lotus japonicus HOM05D000564 ORTHO05D002780 5.5e-07 59.7 53 56.6
Lalb_Chr11g0061571 Lupinus albus HOM05D000564 ORTHO05D002780 5.5e-07 59.7 37 75.7
Manes.18G004200 Manihot esculenta HOM05D000564 ORTHO05D002780 5.5e-07 59.7 34 82.4
Medtr3g115450 Medicago truncatula HOM05D000564 ORTHO05D002780 5.5e-07 59.7 44 63.6
Oeu000697.1 Olea europaea HOM05D000564 ORTHO05D002780 5.5e-07 59.7 37 73.0
Potri.005G251800 Populus trichocarpa HOM05D000564 ORTHO05D002780 5.5e-07 59.7 34 79.4
Sabra02G0007000 Salix brachista HOM05D000564 ORTHO05D002780 5.5e-07 59.7 44 65.9
Sabra05G0195100 Salix brachista HOM05D000564 ORTHO05D002780 5.5e-07 59.7 34 79.4
TWI31G1441 Tripterygium wilfordii HOM05D000564 ORTHO05D002780 5.5e-07 59.7 37 73.0
GSVIVG01023884001 Vitis vinifera HOM05D000564 ORTHO05D002780 5.5e-07 59.7 37 70.3
Actinidia09661 Actinidia chinensis HOM05D000577 ORTHO05D003389 7.2e-07 59.3 40 65.0
BcaB06g28180 Brassica carinata HOM05D000564 ORTHO05D002780 7.2e-07 59.3 37 70.3
Carub.0001s3427 Capsella rubella HOM05D000564 ORTHO05D002780 7.2e-07 59.3 52 57.7
Cfa005358 Carpinus fangiana HOM05D000564 ORTHO05D002780 7.2e-07 59.3 37 73.0
FAN08G0043 Fragaria x ananassa HOM05D000564 ORTHO05D002780 7.2e-07 59.3 40 65.0
Lj6A824G75 Lonicera japonica HOM05D000577 ORTHO05D003389 7.2e-07 59.3 43 60.5
Nitab4.5_0000581g0050 Nicotiana tabacum HOM05D000577 ORTHO05D003389 7.2e-07 59.3 37 70.3
Psat2g001080 Pisum sativum HOM05D000564 ORTHO05D002780 7.2e-07 59.3 34 76.5
Sabra09G0130100 Salix brachista HOM05D000564 ORTHO05D002780 7.2e-07 59.3 53 58.5
Solyc04g082490.3 Solanum lycopersicum HOM05D000564 ORTHO05D002780 7.2e-07 59.3 37 70.3
Sopen04g036110 Solanum pennellii HOM05D000564 ORTHO05D002780 7.2e-07 59.3 37 70.3
AL1G51340 Arabidopsis lyrata HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 70.3
AT1G42470 Arabidopsis thaliana HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 70.3
BcaC02g08217 Brassica carinata HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 70.3
CAN.G311.125 Capsicum annuum HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 70.3
CiPaw.08G074200 Carya illinoinensis HOM05D000564 ORTHO05D002780 9.4e-07 58.9 34 79.4
Thhalv10016155m.g Eutrema salsugineum HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 70.3
FvH4_5g25290 Fragaria vesca HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 70.3
Hma1.2p1_0275F.1_g110920 Hydrangea macrophylla HOM05D000577 ORTHO05D003389 9.4e-07 58.9 41 63.4
Manes.11G110701 Manihot esculenta HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 75.7
PGR142G4088 Punica granatum HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 67.6
QL02p014478 Quercus lobata HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 75.7
RcHm_v2.0_Chr7g0215501 Rosa chinensis HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 73.0
Sp4g10810 Schrenkiella parvula HOM05D000564 ORTHO05D002780 9.4e-07 58.9 37 70.3
CiPaw.05G092000 Carya illinoinensis HOM05D000564 ORTHO05D002780 1.2e-06 58.5 37 70.3
FvH4_2g16650 Fragaria vesca HOM05D000564 ORTHO05D002780 1.2e-06 58.5 41 61.0
FAN15G2627 Fragaria x ananassa HOM05D000564 ORTHO05D002780 1.2e-06 58.5 41 61.0
FAN24G2145 Fragaria x ananassa HOM05D000564 ORTHO05D002780 1.2e-06 58.5 41 61.0
Lsat_1_v5_gn_8_149900 Lactuca sativa HOM05D000577 ORTHO05D003389 1.2e-06 58.5 38 63.2
Prupe.5G011100 Prunus persica HOM05D000564 ORTHO05D002780 1.2e-06 58.5 37 73.0
THA.LOC104801956 Tarenaya hassleriana HOM05D000564 ORTHO05D002780 1.2e-06 58.5 37 67.6
Duzib132G1131 Durio zibethinus HOM05D000564 ORTHO05D002780 1.6e-06 58.2 34 79.4
Hma1.2p1_0668F.1_g199940 Hydrangea macrophylla HOM05D000577 ORTHO05D003389 1.6e-06 58.2 41 61.0
Medtr5g099070 Medicago truncatula HOM05D000564 ORTHO05D002780 1.6e-06 58.2 53 54.7
Potri.009G167000 Populus trichocarpa HOM05D000564 ORTHO05D002780 1.6e-06 58.2 37 70.3
GSVIVG01010374001 Vitis vinifera HOM05D000577 ORTHO05D003389 1.6e-06 58.2 40 67.5
Actinidia14045 Actinidia chinensis HOM05D000564 ORTHO05D002780 2.1e-06 57.8 37 75.7
Actinidia20696 Actinidia chinensis HOM05D000577 ORTHO05D003389 2.1e-06 57.8 40 62.5
BcaB02g10131 Brassica carinata HOM05D000564 ORTHO05D002780 2.1e-06 57.8 37 67.6
A04p21250 Brassica napus HOM05D000564 ORTHO05D002780 2.1e-06 57.8 37 67.6
BolC4t27244H Brassica oleracea HOM05D000564 ORTHO05D002780 2.1e-06 57.8 37 67.6
BraA04t17693Z Brassica rapa HOM05D000564 ORTHO05D002780 2.1e-06 57.8 37 67.6
BraA07t29566Z Brassica rapa HOM05D000564 ORTHO05D002780 2.1e-06 57.8 37 67.6
FAN04G1562 Fragaria x ananassa HOM05D000564 ORTHO05D002780 2.1e-06 57.8 40 65.0
FAN18G0314 Fragaria x ananassa HOM05D000564 ORTHO05D002780 2.1e-06 57.8 40 65.0
Glyma.02G310900 Glycine max HOM05D000564 ORTHO05D002780 2.1e-06 57.8 34 73.5
Glyma.14G001500 Glycine max HOM05D000564 ORTHO05D002780 2.1e-06 57.8 34 73.5
Gohir.A01G175200 Gossypium hirsutum HOM05D000564 ORTHO05D002780 2.1e-06 57.8 37 73.0
HanXRQChr14g0427461 Helianthus annuus HOM05D000564 ORTHO05D002780 2.1e-06 57.8 41 63.4
PSO541G5974 Papaver somniferum HOM05D000564 ORTHO05D002780 2.1e-06 57.8 50 60.0
Psat5g010080 Pisum sativum HOM05D000564 ORTHO05D002780 2.1e-06 57.8 37 70.3
RcHm_v2.0_Chr6g0280781 Rosa chinensis HOM05D000564 ORTHO05D002780 2.1e-06 57.8 45 60.0
TPR.G18634 Trifolium pratense HOM05D000564 ORTHO05D002780 2.1e-06 57.8 34 73.5
TAR629G0638 Trochodendron aralioides HOM05D000577 ORTHO05D003389 2.1e-06 57.8 41 61.0
vmacro02336 Vaccinium macrocarpon HOM05D000564 ORTHO05D002780 2.1e-06 57.8 37 73.0
CARHR292420 Cardamine hirsuta HOM05D000564 ORTHO05D002780 2.7e-06 57.4 52 55.8
AUR62036842 Chenopodium quinoa HOM05D000564 ORTHO05D002780 2.7e-06 57.4 37 73.0
Thhalv10024233m.g Eutrema salsugineum HOM05D000564 ORTHO05D002780 2.7e-06 57.4 41 63.4
HanXRQChr06g0184121 Helianthus annuus HOM05D000564 ORTHO05D002780 2.7e-06 57.4 37 70.3
HanXRQChr08g0207551 Helianthus annuus HOM05D000577 ORTHO05D003389 2.7e-06 57.4 38 63.2
Lsat_1_v5_gn_2_4580 Lactuca sativa HOM05D000564 ORTHO05D002780 2.7e-06 57.4 37 70.3
MD06G1009400 Malus domestica HOM05D000564 ORTHO05D002780 2.7e-06 57.4 37 70.3
Nn5g30968 Nelumbo nucifera HOM05D000564 ORTHO05D002780 2.7e-06 57.4 37 67.6
Nitab4.5_0000148g0070 Nicotiana tabacum HOM05D000577 ORTHO05D003389 2.7e-06 57.4 37 67.6
PSO675G3157 Papaver somniferum HOM05D000564 ORTHO05D002780 2.7e-06 57.4 34 76.5
Potri.002G009600 Populus trichocarpa HOM05D000564 ORTHO05D002780 2.7e-06 57.4 44 63.6
Potri.008G177100 Populus trichocarpa HOM05D000577 ORTHO05D003389 2.7e-06 57.4 37 67.6
ECA238G2170 Erigeron canadensis HOM05D000564 ORTHO05D002780 3.6e-06 57.0 37 70.3
Nn6g31715 Nelumbo nucifera HOM05D000564 ORTHO05D002780 3.6e-06 57.0 37 70.3
Prupe.8G178600 Prunus persica HOM05D000564 ORTHO05D002780 3.6e-06 57.0 41 56.1
Ah.00g000930 Amaranthus hybridus HOM05D000564 ORTHO05D002780 4.6e-06 56.6 37 70.3
Aqoxy3G01497 Aquilegia oxysepala HOM05D000577 ORTHO05D003389 4.6e-06 56.6 41 58.5
CANSAT25G3484 Cannabis sativa HOM05D000564 ORTHO05D002780 4.6e-06 56.6 37 70.3
Carub.0007s0024 Capsella rubella HOM05D000564 ORTHO05D002780 4.6e-06 56.6 37 67.6
CARHR294090 Cardamine hirsuta HOM05D000564 ORTHO05D002780 4.6e-06 56.6 41 63.4
Cpa.g.sc26.185 Carica papaya HOM05D000564 ORTHO05D002780 4.6e-06 56.6 37 70.3
CDE08G0391 Ceratophyllum demersum HOM05D000577 ORTHO05D003389 4.6e-06 56.6 38 63.2
CsaV3_4G037280 Cucumis sativus L. HOM05D000564 ORTHO05D002780 4.6e-06 56.6 34 76.5
Lsat_1_v5_gn_3_29721 Lactuca sativa HOM05D000577 ORTHO05D003389 4.6e-06 56.6 38 63.2
Rhsim12G0028600 Rhododendron simsii HOM05D000577 ORTHO05D003389 4.6e-06 56.6 41 63.4
HPP92_001734 Vanilla planifolia HOM05D000564 ORTHO05D002780 4.6e-06 56.6 99 35.4
A07p18520 Brassica napus HOM05D000564 ORTHO05D002780 6.1e-06 56.2 34 70.6
Ca_18057_v3 Cicer arietinum L. HOM05D000577 ORTHO05D003389 6.1e-06 56.2 55 47.3
FvH4_4g24030 Fragaria vesca HOM05D000577 ORTHO05D003389 6.1e-06 56.2 43 65.1
FAN12G3140 Fragaria x ananassa HOM05D000577 ORTHO05D003389 6.1e-06 56.2 43 65.1
HanXRQChr17g0540281 Helianthus annuus HOM05D000577 ORTHO05D003389 6.1e-06 56.2 40 55.0
EL10Ac1g01939 Beta vulgaris HOM05D000564 ORTHO05D002780 7.9e-06 55.8 37 70.3
BcaC02g10930 Brassica carinata HOM05D000564 ORTHO05D002780 7.9e-06 55.8 37 64.9
C04p23550 Brassica napus HOM05D000564 ORTHO05D002780 7.9e-06 55.8 37 64.9
BolC4t23858H Brassica oleracea HOM05D000564 ORTHO05D002780 7.9e-06 55.8 37 64.9
Haze_02004 Corylus avellana HOM05D000564 ORTHO05D002780 7.9e-06 55.8 37 67.6
MELO3C017027.2 Cucumis melo HOM05D000564 ORTHO05D002780 7.9e-06 55.8 34 73.5
Lalb_Chr04g0246941 Lupinus albus HOM05D000564 ORTHO05D002780 7.9e-06 55.8 53 52.8
SHI07984 Sapria himalayana HOM05D000564 ORTHO05D002780 7.9e-06 55.8 37 64.9
THA.LOC104824737 Tarenaya hassleriana HOM05D000564 ORTHO05D002780 7.9e-06 55.8 44 63.6
vmacro01075 Vaccinium macrocarpon HOM05D000577 ORTHO05D003389 7.9e-06 55.8 41 61.0


User provided reference genes

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