Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 2382.1 1179 100.0
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1810.4 1182 74.5
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1751.5 1197 71.2
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1750.7 1183 72.4
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1728.4 1200 70.1
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1726.1 1182 71.3
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1718.7 1197 70.1
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1699.5 1197 69.4
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1668.7 1181 69.5
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1667.1 1185 68.6
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1663.7 1204 67.8
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1656.7 1205 67.8
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1656.3 1202 67.5
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1650.6 1193 68.2
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1650.2 1193 68.1
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1648.3 1235 66.2
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1646.3 1184 68.4
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1645.9 1192 67.8
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1645.6 1194 67.8
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1645.6 1179 67.3
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1642.9 1195 68.0
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1642.1 1182 68.3
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1641.3 1199 67.2
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1635.2 1191 67.4
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1630.5 1203 65.6
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1630.2 1193 67.1
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1628.2 1184 67.5
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1620.9 1197 67.2
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1620.1 1197 67.0
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1618.2 1197 66.8
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1613.6 1199 66.6
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1611.3 1205 66.6
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1610.9 1204 65.8
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1602.4 1158 67.6
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1601.6 1206 65.6
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1593.6 1182 66.3
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1593.2 1197 66.4
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1591.6 1199 64.3
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1588.2 1185 64.9
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1587.8 1180 66.1
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1584.7 1207 63.9
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1584.3 1185 64.8
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1580.8 1185 65.4
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1577.4 1194 65.2
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1574.7 1206 63.9
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1571.2 1205 63.8
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1570.1 1194 65.1
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1569.7 1212 64.4
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1569.3 1198 64.4
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1565.4 1183 64.5
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1563.5 1223 63.2
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1562.4 1203 64.3
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1560.8 1195 64.1
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1560.0 1198 64.6
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1557.3 1311 60.9
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1555.4 1198 64.6
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1554.7 1192 63.9
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1553.9 1214 63.8
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1549.6 1195 63.5
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1544.3 1263 61.0
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1539.6 1204 62.2
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1539.6 1154 64.4
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1537.3 1199 63.1
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1531.2 1196 63.0
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1529.2 1204 62.9
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1528.8 1199 62.2
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1528.8 1226 60.6
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1520.8 1199 63.1
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1503.4 1200 62.2
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1498.8 1198 61.6
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1498.0 1192 61.3
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1493.0 1191 61.0
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1492.6 1179 62.1
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1488.8 1203 60.8
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1487.6 1190 60.9
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1487.2 1133 64.0
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1483.4 1200 61.6
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1480.3 1202 60.7
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1479.2 1203 60.5
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1474.1 1239 58.8
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1472.2 1180 61.9
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1470.3 1273 59.0
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1469.1 1203 60.2
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1461.4 1203 60.2
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1461.0 1202 59.7
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1458.7 1214 59.6
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1449.9 1196 59.6
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1445.6 1227 58.8
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1443.3 1012 69.9
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1436.0 1224 57.6
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1416.7 1019 68.5
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1413.3 969 71.0
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1397.1 1203 58.4
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1397.1 1177 58.0
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1392.9 1188 57.8
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1379.4 1005 69.0
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1366.3 1208 56.2
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1308.9 1200 57.3
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1206.4 1204 54.7
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1189.1 1190 50.3
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1156.7 1210 52.1
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1151.7 1224 50.0
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1149.0 1213 51.4
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1147.9 1206 48.8
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1130.2 1199 47.6
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1125.5 834 66.1
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 7.5e-292 1007.7 799 62.3
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 9.5e-287 990.7 865 59.0
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 4.0e-277 958.7 715 66.0
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.1e-255 887.5 711 61.3
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.4e-245 854.0 1147 43.7
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 9.3e-242 841.3 1119 41.7
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 7.6e-236 821.6 1097 40.7
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 1.0e-224 784.6 591 65.3
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.3e-211 741.1 494 73.3
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 4.7e-209 732.6 562 66.5
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 7.4e-199 698.7 494 70.2
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 4.1e-197 693.0 754 50.5
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 9.6e-138 495.7 387 64.6
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 1.5e-127 461.8 412 57.0
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 1.7e-126 458.4 570 45.6
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.3e-123 448.0 716 37.4
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 9.4e-93 346.3 260 64.6
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 4.4e-82 310.8 375 45.1
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.4e-72 279.3 274 54.0
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 3.8e-70 271.2 176 75.0
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 3.6e-60 238.0 289 43.6
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 3.3e-53 214.9 202 56.4
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 2.8e-52 211.8 293 40.3
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 2.6e-50 205.3 232 47.8
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 1.3e-38 166.4 131 61.8
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 3.9e-30 138.3 150 52.7
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 2.6e-26 125.6 167 39.5
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 1.1e-19 103.6 72 62.5
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 3.0e-14 85.5 64 65.6
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 1.9e-13 82.8 204 30.9
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 2.8e-12 79.0 129 34.1
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 4.8e-12 78.2 79 49.4
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 1.5e-10 73.2 53 56.6
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.3e-09 70.1 45 75.6
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 2.2e-09 69.3 51 66.7
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 4.6e-07 61.6 95 43.2
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 7.9e-07 60.8 45 60.0
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 1.8e-06 59.7 58 55.2


User provided reference genes

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