Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017866 Daucus carota HOM05D003084 ORTHO05D003580 1.3e-35 152.5 75 100.0
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 1.9e-31 138.7 75 90.7
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 5.5e-31 137.1 75 88.0
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.4e-31 136.3 75 86.7
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.4e-31 136.3 75 86.7
Actinidia38789 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.4e-31 136.3 75 86.7
Atru.chr2.3187 Acer truncatum HOM05D003084 ORTHO05D003580 1.6e-30 135.6 75 88.0
Atru.chr2.3199 Acer truncatum HOM05D003084 ORTHO05D003580 1.6e-30 135.6 75 88.0
Atru.chr7.2124 Acer truncatum HOM05D003084 ORTHO05D003580 1.6e-30 135.6 75 88.0
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 2.1e-30 135.2 75 85.3
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 2.1e-30 135.2 74 87.8
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 2.1e-30 135.2 75 86.7
Eucgr.L00513 Eucalyptus grandis HOM05D003084 ORTHO05D003580 2.1e-30 135.2 75 86.7
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.1e-30 135.2 75 86.7
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.1e-30 135.2 75 86.7
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 2.1e-30 135.2 75 85.3
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 2.1e-30 135.2 75 88.0
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 2.1e-30 135.2 75 86.7
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 2.1e-30 135.2 75 88.0
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 2.7e-30 134.8 75 88.0
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 2.7e-30 134.8 75 85.3
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 3.6e-30 134.4 75 85.3
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 3.6e-30 134.4 75 85.3
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 3.6e-30 134.4 75 86.7
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 3.6e-30 134.4 75 86.7
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 3.6e-30 134.4 75 86.7
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.6e-30 134.4 75 86.7
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 3.6e-30 134.4 75 85.3
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 3.6e-30 134.4 74 85.1
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 3.6e-30 134.4 75 86.7
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 3.6e-30 134.4 75 85.3
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 4.7e-30 134.0 75 85.3
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 4.7e-30 134.0 75 85.3
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 4.7e-30 134.0 75 85.3
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 4.7e-30 134.0 75 85.3
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 4.7e-30 134.0 74 89.2
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 4.7e-30 134.0 74 89.2
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 85.3
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 6.1e-30 133.7 74 87.8
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 85.3
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 85.3
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 85.3
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 85.3
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 85.3
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 85.3
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 84.0
PGSC0003DMG400019022 Solanum tuberosum HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 84.0
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 84.0
HPP92_010409 Vanilla planifolia HOM05D003084 ORTHO05D003580 6.1e-30 133.7 75 86.7
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 84.0
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 84.0
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 84.0
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 84.0
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 84.0
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 84.0
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 84.0
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 84.0
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 86.7
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 85.3
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 86.7
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 84.0
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 7.9e-30 133.3 75 85.3
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 1.0e-29 132.9 75 85.3
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 1.0e-29 132.9 75 84.0
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 1.0e-29 132.9 75 84.0
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.0e-29 132.9 75 84.0
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 1.0e-29 132.9 75 84.0
Cpa.g.sc1387.1 Carica papaya HOM05D003084 ORTHO05D003580 1.4e-29 132.5 75 84.0
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 1.4e-29 132.5 75 85.3
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 1.4e-29 132.5 75 85.3
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 1.4e-29 132.5 75 84.0
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 1.4e-29 132.5 75 84.0
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 1.4e-29 132.5 75 85.3
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 1.4e-29 132.5 74 86.5
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 1.8e-29 132.1 75 84.0
BcaB04g19964 Brassica carinata HOM05D003084 ORTHO05D003580 1.8e-29 132.1 75 82.7
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.8e-29 132.1 75 85.3
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 1.8e-29 132.1 75 85.3
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 2.3e-29 131.7 75 84.0
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 2.3e-29 131.7 75 84.0
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 2.3e-29 131.7 73 87.7
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 2.3e-29 131.7 73 87.7
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 2.3e-29 131.7 74 86.5
RcHm_v2.0_Chr5g0043931 Rosa chinensis HOM05D003084 ORTHO05D003580 2.3e-29 131.7 75 82.7
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 2.3e-29 131.7 76 86.8
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 3.0e-29 131.3 75 81.3
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 3.0e-29 131.3 75 84.0
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 3.0e-29 131.3 75 84.0
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 3.0e-29 131.3 75 84.0
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 3.0e-29 131.3 75 82.7
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 3.9e-29 131.0 75 82.7
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 5.1e-29 130.6 75 84.0
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 6.7e-29 130.2 75 84.0
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 6.7e-29 130.2 74 86.5
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 6.7e-29 130.2 73 82.2
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 6.7e-29 130.2 74 85.1
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 6.7e-29 130.2 75 84.0
DCAR_026292 Daucus carota HOM05D003084 ORTHO05D003580 8.8e-29 129.8 75 82.7
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 8.8e-29 129.8 74 85.1
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 8.8e-29 129.8 75 82.7
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 1.1e-28 129.4 75 81.3
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 1.5e-28 129.0 75 85.3
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.5e-28 129.0 75 84.0
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.0e-28 128.6 70 87.1
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 2.0e-28 128.6 75 81.3
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 2.6e-28 128.3 74 82.4
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 2.6e-28 128.3 73 82.2
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 3.3e-28 127.9 75 80.0
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 3.3e-28 127.9 75 80.0
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 3.3e-28 127.9 74 83.8
AUR62007850 Chenopodium quinoa HOM05D003084 ORTHO05D003580 3.3e-28 127.9 74 83.8
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 3.3e-28 127.9 74 83.8
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 4.4e-28 127.5 79 81.0
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 4.4e-28 127.5 79 81.0
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 4.4e-28 127.5 79 81.0
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 5.7e-28 127.1 75 81.3
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 7.4e-28 126.7 75 80.0
FvH4_3g24440 Fragaria vesca HOM05D003084 ORTHO05D003580 7.4e-28 126.7 75 80.0
FAN11G1592 Fragaria x ananassa HOM05D003084 ORTHO05D003580 7.4e-28 126.7 75 80.0
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 7.4e-28 126.7 72 81.9
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 7.4e-28 126.7 72 81.9
ATR0307G103 Amborella trichopoda HOM05D003084 ORTHO05D003580 9.7e-28 126.3 75 82.7
FAN21G2367 Fragaria x ananassa HOM05D003084 ORTHO05D003580 9.7e-28 126.3 74 79.7
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 9.7e-28 126.3 75 80.0
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 9.7e-28 126.3 75 80.0
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 1.3e-27 125.9 75 80.0
Carub.0013s0010 Capsella rubella HOM05D003084 ORTHO05D003580 2.8e-27 124.8 75 78.7
Oeu042069.1 Olea europaea HOM05D003084 ORTHO05D003580 2.8e-27 124.8 74 79.7
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 3.7e-27 124.4 74 78.4
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 3.7e-27 124.4 75 78.7
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 8.2e-27 123.2 75 76.0
Migut.D02560 Erythranthe guttata HOM05D003084 ORTHO05D003580 1.1e-26 122.9 75 82.7
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 1.1e-26 122.9 75 77.3
C03p62000 Brassica napus HOM05D003084 ORTHO05D003580 1.4e-26 122.5 72 79.2
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 3.1e-26 121.3 74 75.7
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 3.1e-26 121.3 74 81.1
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 9.1e-26 119.8 75 73.3
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 2.9e-24 114.8 73 80.8
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.4e-23 112.5 64 81.2
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 2.5e-23 111.7 63 84.1
ATR0618G025 Amborella trichopoda HOM05D003084 ORTHO05D003580 3.2e-23 111.3 74 73.0
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 3.2e-23 111.3 75 72.0
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 5.5e-23 110.5 76 68.4
TPR.G40556 Trifolium pratense HOM05D003084 ORTHO05D003580 5.5e-23 110.5 65 76.9
MCO09G793 Micromonas commoda HOM05D003084 ORTHO05D003580 7.2e-23 110.2 75 68.0
SMO361G0653 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 7.2e-23 110.2 76 68.4
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 6.1e-22 107.1 65 76.9
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 6.1e-22 107.1 61 78.7
Cre12.g494100 Chlamydomonas reinhardtii HOM05D003084 ORTHO05D003580 1.7e-19 99.0 88 56.8
Haze_26699 Corylus avellana HOM05D003084 ORTHO05D003580 8.2e-19 96.7 71 66.2
PRCOL_00002641 Prasinoderma coloniale HOM05D003084 ORTHO05D003580 3.5e-17 91.3 77 55.8
Cfa022297 Carpinus fangiana HOM05D003084 ORTHO05D003580 2.0e-12 75.5 75 46.7
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 1.9e-07 58.9 34 85.3
MD12G1233900 Malus domestica HOM05D003084 ORTHO05D003580 9.4e-07 56.6 40 75.0


User provided reference genes

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