Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 4.4e-178 627.9 320 100.0
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 4.0e-115 418.7 332 65.4
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 1.2e-114 417.2 311 66.6
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 2.2e-113 412.9 328 63.1
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 3.8e-113 412.1 261 72.4
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 8.4e-113 411.0 331 64.4
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 2.4e-112 409.5 307 65.1
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 1.2e-111 407.1 288 66.7
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 6.7e-110 401.4 262 69.8
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 6.7e-110 401.4 262 69.8
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 6.7e-110 401.4 258 71.7
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 4.3e-109 398.7 291 64.6
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 5.6e-109 398.3 306 62.1
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 6.2e-108 394.8 293 64.5
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 6.2e-108 394.8 338 63.0
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 1.4e-107 393.7 262 69.1
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 2.4e-107 392.9 260 68.8
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 9.0e-107 391.0 320 61.2
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 2.0e-106 389.8 334 60.5
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 2.0e-106 389.8 321 60.7
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 2.6e-106 389.4 317 60.6
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 4.5e-106 388.7 312 60.3
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 1.0e-105 387.5 323 61.3
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 2.2e-105 386.3 322 59.9
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 2.9e-105 386.0 314 60.5
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 3.8e-105 385.6 260 66.5
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 3.8e-105 385.6 327 59.9
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 4.9e-105 385.2 327 57.5
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 4.9e-105 385.2 260 66.9
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 4.9e-105 385.2 262 69.1
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 1.1e-104 384.0 327 57.5
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 1.9e-104 383.3 327 57.2
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 2.5e-104 382.9 304 60.5
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 3.2e-104 382.5 324 59.0
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 3.2e-104 382.5 288 64.6
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 3.2e-104 382.5 293 62.5
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 3.2e-104 382.5 262 70.2
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 4.2e-104 382.1 289 61.6
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 5.5e-104 381.7 259 66.4
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 5.5e-104 381.7 326 59.5
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 9.3e-104 380.9 297 62.3
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 9.3e-104 380.9 260 67.3
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 1.6e-103 380.2 262 66.8
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 2.7e-103 379.4 324 57.1
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 3.5e-103 379.0 260 69.6
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 6.0e-103 378.3 260 65.4
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 7.9e-103 377.9 260 65.8
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 3.0e-102 375.9 262 67.2
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 6.7e-102 374.8 314 59.2
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 1.5e-101 373.6 262 65.6
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 1.9e-101 373.2 322 58.1
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 4.3e-101 372.1 262 64.9
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 5.7e-101 371.7 262 64.1
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 5.7e-101 371.7 260 64.2
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 7.4e-101 371.3 260 64.2
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 9.6e-101 370.9 260 66.9
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 1.3e-100 370.5 262 66.0
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 1.6e-100 370.2 260 66.9
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 1.6e-100 370.2 246 67.5
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 3.7e-100 369.0 251 66.9
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 3.7e-100 369.0 339 57.2
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 1.1e-99 367.5 322 57.8
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 3.1e-99 365.9 262 64.1
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 3.1e-99 365.9 333 58.6
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 3.1e-99 365.9 316 57.9
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 3.1e-99 365.9 262 63.7
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 6.9e-99 364.8 273 63.0
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 6.9e-99 364.8 309 57.3
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 9.0e-99 364.4 315 57.8
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 1.5e-98 363.6 372 52.2
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 1.5e-98 363.6 260 65.0
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 2.6e-98 362.8 256 66.0
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 4.5e-98 362.1 324 57.4
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 5.9e-98 361.7 316 56.6
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 3.8e-97 359.0 240 66.7
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 5.0e-97 358.6 322 55.3
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 1.4e-96 357.1 246 70.3
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 5.5e-96 355.1 301 60.8
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 6.1e-95 351.7 246 64.6
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 1.0e-94 350.9 282 60.6
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 1.8e-94 350.1 277 60.6
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 1.8e-94 350.1 340 52.9
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 3.0e-94 349.4 297 56.9
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 3.9e-94 349.0 245 67.3
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 3.3e-93 345.9 254 65.7
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 1.3e-92 344.0 318 55.3
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 2.0e-90 336.7 246 64.6
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 5.0e-89 332.0 262 58.4
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 3.6e-87 325.9 325 51.7
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 4.4e-85 318.9 260 58.8
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.7e-84 317.0 207 67.6
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 2.2e-84 316.6 260 57.3
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 9.1e-83 311.2 262 55.7
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 3.8e-81 305.8 264 53.4
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 3.2e-80 302.8 267 57.7
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 1.1e-77 294.3 203 67.0
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 4.1e-75 285.8 178 73.0
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.0e-62 243.0 319 43.9
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 6.8e-62 241.9 226 53.5
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 3.7e-60 236.1 260 45.8
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 2.8e-52 209.9 158 62.0
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 1.1e-51 208.0 138 68.8
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 1.0e-49 201.4 151 62.3
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 1.9e-48 197.2 152 57.2
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 2.2e-44 183.7 189 51.9
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 3.1e-38 163.3 112 65.2
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 1.7e-36 157.5 108 67.6
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 4.1e-35 152.9 109 66.1
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 8.9e-30 135.2 157 47.1
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.7e-28 131.0 86 73.3
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 4.9e-28 129.4 158 49.4
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 2.8e-23 113.6 66 78.8
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 2.8e-23 113.6 153 45.8
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 9.9e-21 105.1 162 42.0
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 3.5e-18 96.7 204 27.5
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 3.9e-17 93.2 204 26.0
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 3.9e-17 93.2 204 26.5
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 8.7e-17 92.0 204 26.5
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 1.9e-16 90.9 203 26.6
Migut.B01249 Erythranthe guttata HOM05D005005 ORTHO05D006178 1.9e-16 90.9 204 25.5
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 2.5e-16 90.5 203 25.6
Sed0024277 Sechium edule HOM05D005005 ORTHO05D006178 3.3e-16 90.1 207 26.1
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 4.3e-16 89.7 204 26.0
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 4.3e-16 89.7 203 26.1
Cfa010948 Carpinus fangiana HOM05D005005 ORTHO05D006178 7.3e-16 89.0 203 25.6
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.2e-15 88.2 203 25.1
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.2e-15 88.2 203 25.1
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.2e-15 88.2 203 25.1
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 1.2e-15 88.2 203 25.1
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 1.6e-15 87.8 208 25.0
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 2.1e-15 87.4 204 26.5
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 2.1e-15 87.4 204 26.5
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 2.8e-15 87.0 204 25.5
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 4.7e-15 86.3 204 26.0
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 4.7e-15 86.3 199 27.6
VMungo1127G1151 Vigna mungo HOM05D005005 ORTHO05D006178 6.2e-15 85.9 210 24.3
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 8.1e-15 85.5 204 25.5
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 8.1e-15 85.5 203 23.6
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 1.8e-14 84.3 62 56.5
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 1.8e-14 84.3 62 66.1
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 2.4e-14 84.0 203 25.6
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.2e-13 81.6 207 26.6
MSTRG.5076 Avicennia marina HOM05D005005 ORTHO05D006178 2.0e-13 80.9 211 25.1
Migut.N01858 Erythranthe guttata HOM05D005005 ORTHO05D006178 1.1e-11 75.1 201 24.4
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 1.4e-11 74.7 68 55.9
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.9e-11 74.3 219 21.9
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 7.8e-10 68.9 43 72.1
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 7.3e-08 62.4 147 22.4
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 4.8e-07 59.7 41 56.1
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 6.2e-07 59.3 147 21.8


User provided reference genes

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