Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.9e-240 835.5 430 100.0
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 9.1e-155 550.8 406 69.5
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 1.6e-154 550.1 403 70.7
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 4.7e-143 511.9 366 71.0
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 6.1e-143 511.5 344 75.9
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 6.8e-142 508.1 414 63.8
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.7e-140 502.3 412 64.6
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.4e-139 500.4 433 60.5
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.2e-139 499.2 412 64.1
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 5.4e-139 498.4 433 60.7
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.6e-138 496.9 414 63.5
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 1.7e-137 493.4 430 60.7
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 3.9e-137 492.3 413 62.0
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 2.5e-136 489.6 417 62.1
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 4.3e-136 488.8 401 63.8
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.8e-134 483.4 412 61.7
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 2.3e-134 483.0 410 61.5
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 8.9e-134 481.1 408 59.6
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 7.5e-133 478.0 409 60.6
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 9.8e-133 477.6 409 60.6
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.3e-132 477.2 408 59.1
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 8.3e-132 474.6 408 59.3
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 4.1e-131 472.2 418 60.0
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 1.2e-130 470.7 380 65.0
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.1e-130 469.9 414 61.4
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 4.6e-130 468.8 412 59.5
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 6.0e-130 468.4 413 61.0
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 2.3e-129 466.5 409 58.7
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 3.0e-129 466.1 419 57.8
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 3.9e-129 465.7 427 59.7
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.9e-128 463.4 418 59.6
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 1.2e-127 460.7 413 59.3
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 1.2e-127 460.7 378 63.0
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 3.6e-127 459.1 416 59.1
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.6e-127 459.1 414 58.9
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 8.1e-127 458.0 414 58.9
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 3.1e-126 456.1 413 58.4
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 8.9e-126 454.5 430 58.6
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 8.9e-126 454.5 430 56.7
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 3.4e-125 452.6 415 57.8
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 3.4e-125 452.6 413 58.6
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 4.4e-125 452.2 416 58.2
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 5.8e-125 451.8 415 56.9
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.3e-124 450.7 442 55.4
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 1.7e-124 450.3 409 58.9
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 3.7e-124 449.1 411 56.9
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 3.7e-124 449.1 413 57.6
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 8.3e-124 448.0 411 56.7
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 9.2e-123 444.5 408 57.8
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 2.7e-122 443.0 413 57.4
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.5e-122 442.6 418 58.1
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.0e-121 439.5 415 55.9
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 6.6e-121 438.3 416 55.3
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 8.6e-121 438.0 412 56.8
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.8e-119 433.0 418 53.6
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 3.6e-119 432.6 420 54.0
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 8.1e-119 431.4 420 55.0
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.1e-118 431.0 418 53.3
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 2.4e-118 429.9 409 56.0
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 5.2e-118 428.7 413 57.6
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.2e-117 427.6 413 55.2
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 2.6e-117 426.4 413 55.4
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 2.6e-117 426.4 431 54.8
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 5.8e-117 425.2 409 55.7
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.7e-116 423.7 439 53.5
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.4e-115 420.6 411 54.7
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 1.9e-115 420.2 349 62.5
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 9.2e-115 417.9 415 54.5
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.6e-114 417.2 413 55.2
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.3e-113 414.1 426 53.1
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 3.3e-112 409.5 414 53.9
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 5.6e-112 408.7 483 47.6
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 7.3e-112 408.3 407 54.8
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.3e-111 407.5 412 54.6
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 8.1e-111 404.8 429 53.1
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 3.1e-110 402.9 374 57.5
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 4.0e-110 402.5 351 60.1
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.9e-108 395.6 421 51.8
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.9e-107 393.7 351 57.0
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.2e-106 391.0 384 57.0
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.0e-105 387.9 389 55.3
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.9e-104 383.6 414 51.9
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 7.3e-104 381.7 352 59.7
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.1e-102 376.3 354 59.0
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 4.5e-101 372.5 413 51.3
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 4.5e-101 372.5 400 52.8
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 7.9e-98 361.7 323 60.7
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 8.7e-97 358.2 411 50.6
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 5.6e-96 355.5 436 48.9
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 1.1e-94 351.3 375 50.9
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 1.6e-90 337.4 334 54.8
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 3.5e-90 336.3 386 50.8
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 1.1e-88 331.3 311 57.6
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.3e-84 317.8 516 38.8
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 6.1e-82 308.9 413 44.3
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 1.0e-81 308.1 415 43.6
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 1.0e-81 308.1 382 46.9
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 6.9e-78 295.4 276 56.9
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 1.5e-77 294.3 276 56.2
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.6e-74 284.3 513 38.2
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 7.9e-74 282.0 221 62.4
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.7e-71 274.2 285 55.4
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 2.2e-71 273.9 344 48.0
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 3.7e-63 246.5 436 37.4
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 1.8e-62 244.2 415 40.2
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 4.1e-62 243.0 309 46.0
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 7.0e-62 242.3 229 55.9
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 2.6e-61 240.4 276 48.9
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 2.3e-57 227.3 220 55.0
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.5e-56 224.6 191 58.1
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 7.4e-56 222.2 188 58.0
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 1.1e-54 218.4 294 48.0
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 1.8e-54 217.6 388 37.6
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 1.3e-52 211.5 419 36.5
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 6.5e-52 209.1 218 48.6
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 2.1e-50 204.1 190 56.8
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 1.6e-45 188.0 171 60.8
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 5.2e-41 172.9 269 40.9
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 3.7e-39 166.8 185 49.7
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.6e-37 161.4 437 32.3
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.3e-36 158.3 147 59.9
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.2e-34 151.8 194 45.4
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 1.2e-32 145.2 91 79.1
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.8e-30 137.9 151 49.0
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 7.8e-29 132.5 434 28.6
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.9e-28 130.2 828 22.5
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 2.5e-27 127.5 85 71.8
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 3.3e-27 127.1 99 66.7
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 9.5e-27 125.6 83 71.1
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 9.5e-27 125.6 83 68.7
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.7e-26 123.2 108 54.6
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 3.1e-25 120.6 124 47.6
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.4e-24 116.7 154 46.8
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.1e-19 102.1 135 45.2
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 2.5e-19 100.9 287 29.6
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 6.4e-15 86.3 110 45.5
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 8.3e-15 85.9 326 27.6
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 2.1e-10 71.2 293 25.9
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 7.6e-08 62.8 62 50.0
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 5.4e-06 56.6 48 62.5


User provided reference genes

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