Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_015600 Daucus carota HOM05D007195 ORTHO05D008939 8.3e-85 317.0 161 100.0
CSS0047106 Camellia sinensis var. sinensis HOM05D007195 ORTHO05D008939 3.5e-51 205.3 155 63.9
Actinidia37244 Actinidia chinensis HOM05D007195 ORTHO05D008939 4.6e-51 204.9 155 64.5
Hma1.2p1_0846F.1_g227620 Hydrangea macrophylla HOM05D007195 ORTHO05D008939 1.3e-50 203.4 152 65.1
Gohir.A03G038600 Gossypium hirsutum HOM05D007195 ORTHO05D008939 7.4e-49 197.6 154 65.6
Gohir.D03G129800 Gossypium hirsutum HOM05D007195 ORTHO05D008939 1.3e-48 196.8 154 65.6
DCAR_018881 Daucus carota HOM05D007195 ORTHO05D008939 1.6e-48 196.4 179 58.1
Thecc.09G327900 Theobroma cacao HOM05D007195 ORTHO05D008939 2.1e-48 196.1 156 66.0
TWI79G0669 Tripterygium wilfordii HOM05D007195 ORTHO05D008939 6.2e-48 194.5 151 66.9
Rhsim13G0087100 Rhododendron simsii HOM05D007195 ORTHO05D008939 1.1e-47 193.7 155 61.9
Gorai.003G136500 Gossypium raimondii HOM05D007195 ORTHO05D008939 2.4e-47 192.6 154 64.3
Cc01_g12270 Coffea canephora HOM05D007195 ORTHO05D008939 3.1e-47 192.2 156 64.7
Eucgr.B02402 Eucalyptus grandis HOM05D007195 ORTHO05D008939 3.1e-47 192.2 154 63.0
PSO339G1320 Papaver somniferum HOM05D007195 ORTHO05D008939 3.1e-47 192.2 156 60.9
Atru.chr3.3816 Acer truncatum HOM05D007195 ORTHO05D008939 4.0e-47 191.8 164 62.8
QL01p033425 Quercus lobata HOM05D007195 ORTHO05D008939 4.0e-47 191.8 154 64.9
CANSAT54G2014 Cannabis sativa HOM05D007195 ORTHO05D008939 5.3e-47 191.4 153 62.7
ClCG02G020450 Citrullus lanatus HOM05D007195 ORTHO05D008939 6.9e-47 191.0 156 62.2
TPR.G2998 Trifolium pratense HOM05D007195 ORTHO05D008939 1.2e-46 190.3 154 63.0
arahy.Tifrunner.gnm1.ann1.73EBMB Arachis hypogaea HOM05D007195 ORTHO05D008939 3.4e-46 188.7 158 58.2
Lj3g0003411 Lotus japonicus HOM05D007195 ORTHO05D008939 4.5e-46 188.3 154 62.3
Migut.D02132 Erythranthe guttata HOM05D007195 ORTHO05D008939 5.8e-46 188.0 156 63.5
Glyma.11G143000 Glycine max HOM05D007195 ORTHO05D008939 7.6e-46 187.6 154 62.3
CsaV3_6G022170 Cucumis sativus L. HOM05D007195 ORTHO05D008939 1.7e-45 186.4 156 61.5
MBI05_g35606_MAGBIO Magnolia biondii HOM05D007195 ORTHO05D008939 1.7e-45 186.4 151 66.2
Medtr4g060990 Medicago truncatula HOM05D007195 ORTHO05D008939 1.7e-45 186.4 154 59.7
Sed0026895 Sechium edule HOM05D007195 ORTHO05D008939 1.7e-45 186.4 154 61.0
VMungo1127G1709 Vigna mungo HOM05D007195 ORTHO05D008939 1.7e-45 186.4 153 62.1
Oeu040291.1 Olea europaea HOM05D007195 ORTHO05D008939 3.8e-45 185.3 156 64.1
Lalb_Chr01g0003811 Lupinus albus HOM05D007195 ORTHO05D008939 1.1e-44 183.7 154 61.7
CAN.G420.9 Capsicum annuum HOM05D007195 ORTHO05D008939 1.9e-44 183.0 154 61.0
PGSC0003DMG401015537 Solanum tuberosum HOM05D007195 ORTHO05D008939 1.9e-44 183.0 156 60.3
MSTRG.18595 Avicennia marina HOM05D007195 ORTHO05D008939 2.4e-44 182.6 156 61.5
Cpa.g.sc190.38 Carica papaya HOM05D007195 ORTHO05D008939 2.4e-44 182.6 153 59.5
Lalb_Chr19g0137671 Lupinus albus HOM05D007195 ORTHO05D008939 2.4e-44 182.6 154 59.1
Potri.001G235400 Populus trichocarpa HOM05D007195 ORTHO05D008939 2.4e-44 182.6 152 61.2
vmacro03115 Vaccinium macrocarpon HOM05D007195 ORTHO05D008939 2.4e-44 182.6 165 57.0
ATR0033G009 Amborella trichopoda HOM05D007195 ORTHO05D008939 3.2e-44 182.2 154 63.0
Sc12g0001700 Simmondsia chinensis HOM05D007195 ORTHO05D008939 3.2e-44 182.2 150 62.7
Nitab4.5_0000610g0300 Nicotiana tabacum HOM05D007195 ORTHO05D008939 5.5e-44 181.4 154 60.4
AUR62009627 Chenopodium quinoa HOM05D007195 ORTHO05D008939 1.2e-43 180.3 153 60.8
HanXRQChr06g0175991 Helianthus annuus HOM05D007195 ORTHO05D008939 1.2e-43 180.3 151 59.6
Ca_19192_v3 Cicer arietinum L. HOM05D007195 ORTHO05D008939 3.5e-43 178.7 154 58.4
CiPaw.14G072400 Carya illinoinensis HOM05D007195 ORTHO05D008939 4.6e-43 178.3 152 60.5
Haze_24028 Corylus avellana HOM05D007195 ORTHO05D008939 7.9e-43 177.6 154 61.7
Manes.11G134400 Manihot esculenta HOM05D007195 ORTHO05D008939 1.0e-42 177.2 151 61.6
PSO384G1952 Papaver somniferum HOM05D007195 ORTHO05D008939 1.3e-42 176.8 147 58.5
Solyc11g073130.2 Solanum lycopersicum HOM05D007195 ORTHO05D008939 1.3e-42 176.8 156 57.7
Sopen11g030780 Solanum pennellii HOM05D007195 ORTHO05D008939 1.3e-42 176.8 156 57.7
Cfa011446 Carpinus fangiana HOM05D007195 ORTHO05D008939 3.0e-42 175.6 154 61.7
MELO3C013676.2 Cucumis melo HOM05D007195 ORTHO05D008939 3.3e-41 172.2 144 61.8
GSVIVG01025036001 Vitis vinifera HOM05D007195 ORTHO05D008939 2.8e-40 169.1 156 59.0
AT5G59770 Arabidopsis thaliana HOM05D007195 ORTHO05D008939 1.1e-39 167.2 150 54.7
AL8G36290 Arabidopsis lyrata HOM05D007195 ORTHO05D008939 3.1e-39 165.6 150 54.7
CARHR273350 Cardamine hirsuta HOM05D007195 ORTHO05D008939 5.3e-39 164.9 155 54.2
Thhalv10014612m.g Eutrema salsugineum HOM05D007195 ORTHO05D008939 6.9e-39 164.5 148 54.1
A02p06880 Brassica napus HOM05D007195 ORTHO05D008939 9.0e-39 164.1 150 53.3
Sp6g21440 Schrenkiella parvula HOM05D007195 ORTHO05D008939 1.2e-38 163.7 155 53.5
THA.LOC104810801 Tarenaya hassleriana HOM05D007195 ORTHO05D008939 1.5e-38 163.3 164 51.8
BolC2t07319H Brassica oleracea HOM05D007195 ORTHO05D008939 2.0e-38 162.9 150 53.3
BraA02t05767Z Brassica rapa HOM05D007195 ORTHO05D008939 3.4e-38 162.2 150 53.3
MD03G1100000 Malus domestica HOM05D007195 ORTHO05D008939 3.4e-38 162.2 154 57.1
C02p12160 Brassica napus HOM05D007195 ORTHO05D008939 5.8e-38 161.4 150 52.7
Thhalv10027965m.g Eutrema salsugineum HOM05D007195 ORTHO05D008939 1.0e-37 160.6 148 56.8
Prupe.6G085100 Prunus persica HOM05D007195 ORTHO05D008939 1.0e-37 160.6 154 56.5
ECA236G1878 Erigeron canadensis HOM05D007195 ORTHO05D000180 1.7e-37 159.8 129 59.7
BcaB05g22577 Brassica carinata HOM05D007195 ORTHO05D008939 2.9e-37 159.1 150 52.0
Carub.0008s2043 Capsella rubella HOM05D007195 ORTHO05D008939 6.5e-37 157.9 155 52.3
Lsat_1_v5_gn_8_78640 Lactuca sativa HOM05D007195 ORTHO05D008939 6.5e-37 157.9 128 59.4
Ciclev10029246m.g Citrus clementina HOM05D007195 ORTHO05D008939 1.9e-36 156.4 155 54.2
Sabra16G0141600 Salix brachista HOM05D007195 ORTHO05D008939 1.9e-36 156.4 222 43.2
Aa31sc23G190 Aethionema arabicum HOM05D007195 ORTHO05D008939 2.5e-36 156.0 154 50.6
EL10Ac7g15961 Beta vulgaris HOM05D007195 ORTHO05D008939 1.2e-35 153.7 165 50.9
Zm00001eb351400 Zea mays HOM05D007195 ORTHO05D008939 2.1e-35 152.9 154 52.6
Psat6g139760 Pisum sativum HOM05D007195 ORTHO05D008939 3.5e-35 152.1 130 57.7
Dinv32847 Davidia involucrata HOM05D007195 ORTHO05D008939 6.0e-35 151.4 126 59.5
Os05g0460800 Oryza sativa ssp. japonica HOM05D007195 ORTHO05D008939 1.0e-34 150.6 154 52.6
CDE11G0069 Ceratophyllum demersum HOM05D007195 ORTHO05D008939 8.7e-34 147.5 154 53.9
COL.COLO4_18444 Corchorus olitorius HOM05D007195 ORTHO05D008939 1.5e-33 146.7 145 57.9
SalBow3G3377 Salvia bowleyana HOM05D007195 ORTHO05D008939 1.9e-33 146.4 132 60.6
RcHm_v2.0_Chr5g0062801 Rosa chinensis HOM05D007195 ORTHO05D008939 4.3e-33 145.2 154 51.9
AagrBONN_evm.TU.Sc2ySwM_344.4841 Anthoceros agrestis HOM05D007195 ORTHO05D008939 5.7e-33 144.8 153 51.6
FAN21G0153 Fragaria x ananassa HOM05D007195 ORTHO05D008939 6.3e-32 141.4 155 52.9
FvH4_3g34950 Fragaria vesca HOM05D007195 ORTHO05D008939 8.2e-32 141.0 154 51.3
FAN11G1442 Fragaria x ananassa HOM05D007195 ORTHO05D008939 8.2e-32 141.0 154 51.3
FAN16G0269 Fragaria x ananassa HOM05D007195 ORTHO05D008939 1.4e-31 140.2 154 50.6
Nitab4.5_0003179g0020 Nicotiana tabacum HOM05D007195 ORTHO05D008939 9.0e-31 137.5 122 58.2
unitig_899.g14897 Utricularia gibba HOM05D007195 ORTHO05D008939 7.6e-30 134.4 124 58.1
Nn2g10480 Nelumbo nucifera HOM05D007195 ORTHO05D008939 1.9e-28 129.8 155 47.1
MBI05_g38489_MAGBIO Magnolia biondii HOM05D007195 ORTHO05D008939 5.5e-28 128.3 110 61.8
AUR62001839 Chenopodium quinoa HOM05D007195 ORTHO05D008939 1.2e-27 127.1 138 50.7
Mapoly0010s0013 Marchantia polymorpha HOM05D007195 ORTHO05D008939 1.2e-27 127.1 152 50.0
SEGI_20662 Sequoiadendron giganteum HOM05D007195 ORTHO05D008939 5.1e-26 121.7 106 56.6
arahy.Tifrunner.gnm1.ann1.7SC5JI Arachis hypogaea HOM05D007195 ORTHO05D008939 1.5e-25 120.2 108 52.8
Eucgr.L03445 Eucalyptus grandis HOM05D007195 ORTHO05D008939 1.7e-24 116.7 90 63.3
MCO05G519 Micromonas commoda HOM05D004350 ORTHO05D008939 1.8e-23 113.2 147 47.6
CSS0014951 Camellia sinensis var. sinensis HOM05D007195 ORTHO05D008939 2.6e-22 109.4 87 58.6
arahy.Tifrunner.gnm1.ann1.R57C1H Arachis hypogaea HOM05D000640 ORTHO05D008939 1.0e-21 107.5 121 43.8
Peaxi162Scf00411g00012 Petunia axillaris HOM05D007195 ORTHO05D008939 2.5e-20 102.8 90 56.7
FAN25G0594 Fragaria x ananassa HOM05D007195 ORTHO05D008939 1.2e-19 100.5 99 50.5
Aqoxy4G03018 Aquilegia oxysepala HOM05D007195 ORTHO05D008939 7.9e-19 97.8 83 56.6
Cre08.g363500 Chlamydomonas reinhardtii HOM05D004350 ORTHO05D008939 1.1e-17 94.0 152 39.5
PRCOL_00000565 Prasinoderma coloniale HOM05D004350 ORTHO05D008939 3.1e-15 85.9 174 35.6
Phvul.011G067100 Phaseolus vulgaris HOM05D007195 ORTHO05D008939 2.6e-14 82.8 72 56.9
Hma1.2p1_0846F.1_g227610 Hydrangea macrophylla HOM05D007195 ORTHO05D008939 5.0e-13 78.6 132 37.9
SMO343G0124 Selaginella moellendorffii HOM05D007195 ORTHO05D008939 7.2e-12 74.7 85 51.8
ECA238G4457 Erigeron canadensis HOM05D004350 ORTHO05D005260 2.3e-10 69.7 154 33.8
HanXRQChr11g0346981 Helianthus annuus HOM05D004350 ORTHO05D005260 5.2e-10 68.6 159 32.1
Psat7g222600 Pisum sativum HOM05D007195 ORTHO05D008939 2.6e-09 66.2 55 56.4
HanXRQChr14g0442921 Helianthus annuus HOM05D004350 ORTHO05D005260 3.3e-09 65.9 155 32.3
Os01g0150800 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 1.3e-08 63.9 155 33.5
Nn5g29888 Nelumbo nucifera HOM05D004350 ORTHO05D005260 3.7e-08 62.4 156 32.1
Lsat_1_v5_gn_2_70580 Lactuca sativa HOM05D004350 ORTHO05D005260 6.3e-08 61.6 154 31.8
ATR0767G219 Amborella trichopoda HOM05D004350 ORTHO05D005260 8.2e-08 61.2 155 32.9
Medtr8g471160 Medicago truncatula HOM05D004350 ORTHO05D005260 1.1e-07 60.8 151 33.8
Pp3c2_13410 Physcomitrium patens HOM05D004350 ORTHO05D005260 1.8e-07 60.1 162 30.2
Zm00001eb335910 Zea mays HOM05D004350 ORTHO05D005260 1.8e-07 60.1 153 30.7
Aqoxy5G01391 Aquilegia oxysepala HOM05D004350 ORTHO05D005260 2.4e-07 59.7 155 31.6
ECA246G1176 Erigeron canadensis HOM05D004350 ORTHO05D005260 2.4e-07 59.7 148 33.1
Mapoly0034s0103 Marchantia polymorpha HOM05D004350 ORTHO05D005260 2.4e-07 59.7 155 31.6
Pp3c12_26220 Physcomitrium patens HOM05D007195 ORTHO05D008939 2.4e-07 59.7 82 43.9
Lsat_1_v5_gn_3_62861 Lactuca sativa HOM05D004350 ORTHO05D005260 3.1e-07 59.3 112 37.5
Hund16535 Selenicereus undatus HOM05D004350 ORTHO05D005260 4.1e-07 58.9 155 30.3
VMungo1215G0627 Vigna mungo HOM05D004350 ORTHO05D005260 4.1e-07 58.9 105 39.0
Oeu055598.1 Olea europaea HOM05D004350 ORTHO05D005260 5.3e-07 58.5 151 33.1
Phvul.002G147400 Phaseolus vulgaris HOM05D004350 ORTHO05D005260 5.3e-07 58.5 155 32.3
AagrBONN_evm.TU.Sc2ySwM_228.1037 Anthoceros agrestis HOM05D004350 ORTHO05D005260 9.1e-07 57.8 140 34.3
Cc07_g14130 Coffea canephora HOM05D004350 ORTHO05D005260 9.1e-07 57.8 157 32.5
Dinv13605 Davidia involucrata HOM05D004350 ORTHO05D005260 9.1e-07 57.8 166 30.1
SalBow6G1994 Salvia bowleyana HOM05D004350 ORTHO05D005260 9.1e-07 57.8 162 30.9
Sopen11g005390 Solanum pennellii HOM05D004350 ORTHO05D005260 9.1e-07 57.8 121 33.9
Nn1g05564 Nelumbo nucifera HOM05D004350 ORTHO05D005260 1.2e-06 57.4 155 29.7
TPR.G14596 Trifolium pratense HOM05D004350 ORTHO05D005260 1.2e-06 57.4 151 33.1
HPP92_014310 Vanilla planifolia HOM05D004350 ORTHO05D005260 1.2e-06 57.4 162 31.5
Ca_22608_v3 Cicer arietinum L. HOM05D004350 ORTHO05D005260 1.6e-06 57.0 151 31.1
Os01g0150200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 1.6e-06 57.0 153 31.4
Psat4g119600 Pisum sativum HOM05D004350 ORTHO05D005260 1.6e-06 57.0 151 31.1
PRCOL_00006117 Prasinoderma coloniale HOM05D004350 ORTHO05D005260 1.6e-06 57.0 159 34.6
SGA_v2.0_scaffold58G20514 Striga asiatica HOM05D004350 ORTHO05D005260 1.6e-06 57.0 162 31.5
Manes.13G099500 Manihot esculenta HOM05D004350 ORTHO05D005260 2.0e-06 56.6 155 31.0
MELO3C016419.2 Cucumis melo HOM05D004350 ORTHO05D005260 2.6e-06 56.2 155 29.7
Migut.B00221 Erythranthe guttata HOM05D004350 ORTHO05D005260 2.6e-06 56.2 157 31.8
Actinidia30847 Actinidia chinensis HOM05D004350 ORTHO05D005260 3.5e-06 55.8 151 30.5
Duzib187G1704 Durio zibethinus HOM05D004350 ORTHO05D005260 3.5e-06 55.8 158 31.0
Sed0019313 Sechium edule HOM05D004350 ORTHO05D005260 3.5e-06 55.8 155 29.0
Sc03g0000310 Simmondsia chinensis HOM05D004350 ORTHO05D005260 3.5e-06 55.8 155 31.0
Sopen04g006490 Solanum pennellii HOM05D004350 ORTHO05D005260 3.5e-06 55.8 155 31.6
CsaV3_3G006860 Cucumis sativus L. HOM05D004350 ORTHO05D005260 4.5e-06 55.5 155 29.7
C03p05130 Brassica napus HOM05D004350 ORTHO05D005260 5.9e-06 55.1 155 33.5
Glyma.18G146900 Glycine max HOM05D004350 ORTHO05D005260 5.9e-06 55.1 158 31.6
Hma1.2p1_0433F.1_g152050 Hydrangea macrophylla HOM05D004350 ORTHO05D005260 5.9e-06 55.1 155 31.0
MBI16_g27585_MAGBIO Magnolia biondii HOM05D004350 ORTHO05D005260 5.9e-06 55.1 86 33.7
Os04g0271200 Oryza sativa ssp. japonica HOM05D004350 ORTHO05D005260 5.9e-06 55.1 153 30.1
Solyc04g014370.4 Solanum lycopersicum HOM05D004350 ORTHO05D005260 5.9e-06 55.1 155 31.6
arahy.Tifrunner.gnm1.ann1.4PU0PP Arachis hypogaea HOM05D004350 ORTHO05D005260 7.7e-06 54.7 105 34.3
arahy.Tifrunner.gnm1.ann1.Y3UPDN Arachis hypogaea HOM05D004350 ORTHO05D005260 7.7e-06 54.7 105 34.3
Gohir.A11G206700 Gossypium hirsutum HOM05D004350 ORTHO05D005260 7.7e-06 54.7 155 31.6
Rhsim08G0016400 Rhododendron simsii HOM05D004350 ORTHO05D005260 7.7e-06 54.7 155 31.0


User provided reference genes

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