Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 3.6e-100 368.2 184 100.0
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 9.2e-88 327.0 184 87.5
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 5.0e-86 321.2 182 84.1
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 3.3e-85 318.5 182 84.1
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 4.3e-85 318.2 182 83.0
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 9.5e-85 317.0 182 84.1
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 9.5e-85 317.0 182 83.0
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.0e-84 313.9 182 84.1
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.0e-84 313.9 182 84.1
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 8.0e-84 313.9 180 82.8
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.4e-83 313.2 184 82.1
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.3e-83 312.4 182 83.5
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 3.1e-83 312.0 182 82.4
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 5.2e-83 311.2 182 82.4
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 5.2e-83 311.2 182 82.4
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 8.9e-83 310.5 182 82.4
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 8.9e-83 310.5 184 82.6
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.6e-82 308.9 182 81.3
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 2.6e-82 308.9 182 80.8
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 4.4e-82 308.1 182 80.8
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 5.8e-82 307.8 184 82.6
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 5.8e-82 307.8 182 80.8
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 7.5e-82 307.4 178 83.1
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 7.5e-82 307.4 182 80.2
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 7.5e-82 307.4 182 80.8
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 9.8e-82 307.0 182 79.1
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.7e-81 306.2 184 81.0
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 2.2e-81 305.8 182 80.8
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 2.2e-81 305.8 184 80.4
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 2.9e-81 305.4 184 81.0
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 4.9e-81 304.7 182 81.9
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.1e-80 303.5 182 80.2
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.1e-80 303.5 182 80.2
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.4e-80 303.1 182 79.7
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 1.4e-80 303.1 185 81.1
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.4e-80 303.1 182 80.8
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.4e-80 302.4 182 79.1
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 5.4e-80 301.2 182 78.6
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 1.2e-79 300.1 177 81.4
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-79 300.1 177 81.4
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.6e-79 299.7 182 79.1
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.6e-79 299.7 182 79.7
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.1e-79 299.3 182 79.1
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.1e-79 299.3 182 79.1
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.1e-79 299.3 182 75.8
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 3.5e-79 298.5 182 79.1
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 6.0e-79 297.7 182 75.8
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.0e-78 297.0 182 78.6
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.0e-78 297.0 182 78.0
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.3e-78 296.6 177 80.2
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.3e-78 295.8 182 78.6
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 3.0e-78 295.4 182 75.8
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.9e-78 295.0 182 78.6
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 3.9e-78 295.0 182 77.5
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 6.6e-78 294.3 182 77.5
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 6.6e-78 294.3 178 79.8
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 6.6e-78 294.3 178 80.9
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 6.6e-78 294.3 182 76.4
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 8.6e-78 293.9 182 75.8
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.1e-77 293.5 182 76.4
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.5e-77 293.1 180 76.7
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 3.3e-77 292.0 182 74.2
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 3.3e-77 292.0 183 77.6
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 4.3e-77 291.6 182 75.8
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 5.6e-77 291.2 179 75.4
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.5e-77 290.4 184 73.9
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 9.5e-77 290.4 184 73.9
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.2e-76 290.0 184 73.9
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.2e-76 290.0 182 76.4
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.6e-76 289.7 181 75.7
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 1.6e-76 289.7 182 75.8
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 2.1e-76 289.3 182 76.4
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.8e-76 288.9 182 74.7
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.8e-76 288.9 182 75.8
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 3.6e-76 288.5 182 76.9
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 6.2e-76 287.7 182 75.8
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.1e-75 287.0 178 75.8
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.4e-75 286.6 179 74.3
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 1.4e-75 286.6 178 75.8
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.3e-75 285.8 182 73.1
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.3e-75 285.8 182 73.1
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 4.0e-75 285.0 182 73.1
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 4.0e-75 285.0 182 74.2
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 6.8e-75 284.3 179 76.0
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 8.9e-75 283.9 182 73.1
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.2e-74 283.5 182 73.1
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.5e-74 283.1 182 72.5
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.5e-74 283.1 177 78.0
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 3.4e-74 282.0 178 74.2
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 3.4e-74 282.0 182 73.1
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 3.4e-74 282.0 182 73.1
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 9.9e-74 280.4 182 69.2
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 1.3e-73 280.0 179 73.7
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 3.7e-73 278.5 178 72.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 4.9e-73 278.1 177 75.1
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 6.4e-73 277.7 182 72.5
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 6.4e-73 277.7 182 72.5
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 6.4e-73 277.7 182 72.5
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 8.3e-73 277.3 180 72.8
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 1.4e-72 276.6 182 72.5
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 1.4e-72 276.6 179 73.2
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 2.4e-72 275.8 182 71.4
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 3.2e-72 275.4 182 72.5
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 4.1e-72 275.0 181 71.3
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 5.4e-72 274.6 182 70.9
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.2e-71 273.5 183 71.6
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 2.7e-71 272.3 191 71.2
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 6.0e-71 271.2 170 74.7
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 1.0e-70 270.4 182 68.1
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 2.5e-69 265.8 179 70.4
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.2e-68 263.5 183 70.5
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.1e-68 262.7 182 68.7
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 2.1e-68 262.7 185 68.1
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 3.6e-68 261.9 175 68.6
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 4.7e-68 261.5 177 71.2
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 8.1e-68 260.8 182 68.7
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 2.4e-67 259.2 182 67.0
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 4.0e-67 258.5 180 67.2
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 5.2e-67 258.1 182 70.3
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.2e-66 256.9 183 66.1
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 4.4e-66 255.0 183 65.6
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 9.9e-66 253.8 183 65.6
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 4.9e-65 251.5 183 65.6
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.4e-64 250.0 180 67.2
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 4.3e-61 238.4 178 63.5
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 7.3e-61 237.7 177 63.3
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 9.6e-61 237.3 185 62.2
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.8e-59 233.0 179 64.8
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 2.4e-59 232.6 186 59.1
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 3.2e-56 222.2 179 59.2
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.2e-55 220.3 180 60.6
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 1.2e-55 220.3 182 62.6
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 2.5e-53 212.6 163 65.6
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 9.3e-48 194.1 184 56.0
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.1e-45 187.2 121 70.2
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.1e-44 181.0 115 73.0
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.6e-42 176.0 197 50.3
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 6.5e-41 171.4 160 51.9
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 1.3e-36 157.1 179 41.9
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 5.7e-29 131.7 109 62.4
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 4.5e-26 122.1 75 78.7
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 7.7e-26 121.3 99 60.6
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 6.5e-17 91.7 164 32.9
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 1.3e-12 77.4 51 68.6
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 2.2e-12 76.6 59 62.7
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 3.7e-12 75.9 55 65.5
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 5.0e-09 65.5 38 78.9


User provided reference genes

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