Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013846 Daucus carota HOM05D002790 ORTHO05D003033 5.2e-266 920.6 507 100.0
Dinv39481 Davidia involucrata HOM05D002790 ORTHO05D003033 2.3e-27 127.9 626 25.9
Dinv31807 Davidia involucrata HOM05D002790 ORTHO05D003033 5.0e-27 126.7 612 25.7
Actinidia15385 Actinidia chinensis HOM05D002790 ORTHO05D003033 9.5e-18 95.9 552 25.0
GSVIVG01009819001 Vitis vinifera HOM05D002790 ORTHO05D003033 1.2e-17 95.5 530 24.5
TWI12G1064 Tripterygium wilfordii HOM05D002790 ORTHO05D003033 2.8e-17 94.4 560 24.3
Hma1.2p1_1386F.1_g279850 Hydrangea macrophylla HOM05D002790 ORTHO05D003033 1.4e-16 92.0 577 24.1
CSS0003108 Camellia sinensis var. sinensis HOM05D002790 ORTHO05D003033 4.0e-16 90.5 534 24.5
CAN.G743.4 Capsicum annuum HOM05D002790 ORTHO05D003033 2.9e-14 84.3 561 24.8
Solyc07g032510.3 Solanum lycopersicum HOM05D002790 ORTHO05D003033 6.4e-14 83.2 575 24.3
Manes.05G152900 Manihot esculenta HOM05D002790 ORTHO05D003033 8.3e-14 82.8 532 24.6
Duzib093G0905 Durio zibethinus HOM05D002790 ORTHO05D003033 1.1e-13 82.4 496 25.4
Duzib116G0605 Durio zibethinus HOM05D002790 ORTHO05D003033 1.4e-13 82.0 536 24.8
Sopen07g015370 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-13 82.0 571 23.8
Duzib147G0927 Durio zibethinus HOM05D002790 ORTHO05D003033 2.4e-13 81.3 508 24.0
MSTRG.2501 Avicennia marina HOM05D002790 ORTHO05D003033 3.2e-13 80.9 527 24.7
VMungo1309G1755 Vigna mungo HOM05D002790 ORTHO05D003033 4.1e-13 80.5 526 24.5
Nitab4.5_0007395g0010 Nicotiana tabacum HOM05D002790 ORTHO05D003033 5.4e-13 80.1 568 24.5
Sc15g0007250 Simmondsia chinensis HOM05D002790 ORTHO05D003033 5.4e-13 80.1 559 24.7
Thecc.08G037000 Theobroma cacao HOM05D002790 ORTHO05D003033 5.4e-13 80.1 545 24.4
Manes.18G018000 Manihot esculenta HOM05D002790 ORTHO05D003033 1.2e-12 79.0 511 23.9
COL.COLO4_26207 Corchorus olitorius HOM05D002790 ORTHO05D003033 1.6e-12 78.6 598 24.2
Sabra02G0022300 Salix brachista HOM05D002790 ORTHO05D003033 1.6e-12 78.6 564 24.5
CiPaw.07G154600 Carya illinoinensis HOM05D002790 ORTHO05D003033 2.7e-12 77.8 541 24.0
Gohir.A01G113200 Gossypium hirsutum HOM05D002790 ORTHO05D003033 3.5e-12 77.4 526 25.1
Nitab4.5_0000352g0100 Nicotiana tabacum HOM05D002790 ORTHO05D003033 4.6e-12 77.0 266 28.9
PGR031G2308 Punica granatum HOM05D002790 ORTHO05D003033 4.6e-12 77.0 527 24.1
TWI36G1564 Tripterygium wilfordii HOM05D002790 ORTHO05D003033 4.6e-12 77.0 536 23.5
Ah.16g109840 Amaranthus hybridus HOM05D002790 ORTHO05D003033 7.8e-12 76.3 537 22.5
EL10Ac1g00562 Beta vulgaris HOM05D002790 ORTHO05D003033 1.0e-11 75.9 535 23.4
Cc10_g02150 Coffea canephora HOM05D002790 ORTHO05D003033 1.0e-11 75.9 488 26.2
Gohir.D01G100700 Gossypium hirsutum HOM05D002790 ORTHO05D003033 1.0e-11 75.9 525 24.8
Gorai.002G125300 Gossypium raimondii HOM05D002790 ORTHO05D003033 1.3e-11 75.5 528 24.8
Lalb_Chr23g0266311 Lupinus albus HOM05D002790 ORTHO05D003033 1.3e-11 75.5 492 24.4
Potri.002G028300 Populus trichocarpa HOM05D002790 ORTHO05D003033 1.3e-11 75.5 536 24.3
QL06p034509 Quercus lobata HOM05D002790 ORTHO05D003033 1.7e-11 75.1 496 26.0
Cfa013901 Carpinus fangiana HOM05D002790 ORTHO05D003033 3.0e-11 74.3 606 25.4
Potri.005G234300 Populus trichocarpa HOM05D002790 ORTHO05D003033 5.0e-11 73.6 513 22.8
Haze_22581 Corylus avellana HOM05D002790 ORTHO05D003033 1.1e-10 72.4 607 24.7
Atru.chr13.365 Acer truncatum HOM05D002790 ORTHO05D003033 1.5e-10 72.0 172 33.1
arahy.Tifrunner.gnm1.ann1.ZAY3TB Arachis hypogaea HOM05D002790 ORTHO05D003033 1.9e-10 71.6 530 24.0
Lalb_Chr11g0062081 Lupinus albus HOM05D002790 ORTHO05D003033 1.9e-10 71.6 559 24.7
Nitab4.5_0000587g0090 Nicotiana tabacum HOM05D002790 ORTHO05D003033 1.9e-10 71.6 176 34.1
GSVIVG01018838001 Vitis vinifera HOM05D002790 ORTHO05D003033 1.9e-10 71.6 548 24.6
Gorai.007G198000 Gossypium raimondii HOM05D002790 ORTHO05D003033 2.5e-10 71.2 474 25.5
RcHm_v2.0_Chr6g0302071 Rosa chinensis HOM05D002790 ORTHO05D003033 2.5e-10 71.2 566 23.9
COL.COLO4_21978 Corchorus olitorius HOM05D002790 ORTHO05D003033 3.3e-10 70.9 507 24.1
arahy.Tifrunner.gnm1.ann1.6PK8GH Arachis hypogaea HOM05D002790 ORTHO05D003033 5.6e-10 70.1 530 24.2
CSS0020058 Camellia sinensis var. sinensis HOM05D002790 ORTHO05D003033 5.6e-10 70.1 111 40.5
vmacro22101 Vaccinium macrocarpon HOM05D002790 ORTHO05D003033 7.3e-10 69.7 617 23.8
MSTRG.1229 Avicennia marina HOM05D002790 ORTHO05D003033 9.5e-10 69.3 519 22.9
Dinv33594 Davidia involucrata HOM05D002790 ORTHO05D003033 1.2e-09 68.9 109 41.3
FvH4_2g38980 Fragaria vesca HOM05D002790 ORTHO05D003033 1.6e-09 68.6 522 22.2
QL08p045938 Quercus lobata HOM05D002790 ORTHO05D003033 2.1e-09 68.2 555 24.5
QL09p025225 Quercus lobata HOM05D002790 ORTHO05D003033 2.1e-09 68.2 555 24.5
Sabra05G0180600 Salix brachista HOM05D002790 ORTHO05D003033 2.1e-09 68.2 495 22.6
arahy.Tifrunner.gnm1.ann1.JCP29K Arachis hypogaea HOM05D002790 ORTHO05D003033 2.8e-09 67.8 511 23.7
Ciclev10024938m.g Citrus clementina HOM05D002790 ORTHO05D003033 2.8e-09 67.8 322 26.1
Manes.01G142000 Manihot esculenta HOM05D002790 ORTHO05D003033 3.6e-09 67.4 325 25.8
Peaxi162Scf00640g00214 Petunia axillaris HOM05D002790 ORTHO05D003033 4.7e-09 67.0 576 24.8
CANSAT25G2720 Cannabis sativa HOM05D002790 ORTHO05D003033 6.2e-09 66.6 579 23.5
ECA238G0986 Erigeron canadensis HOM05D002790 ORTHO05D003033 8.1e-09 66.2 172 33.7
Glyma.04G027100 Glycine max HOM05D002790 ORTHO05D003033 8.1e-09 66.2 114 36.8
Nn8g39421 Nelumbo nucifera HOM05D002790 ORTHO05D003033 8.1e-09 66.2 590 23.4
Gohir.A11G178700 Gossypium hirsutum HOM05D002790 ORTHO05D003033 1.1e-08 65.9 469 25.2
Lj4C213G3 Lonicera japonica HOM05D002790 ORTHO05D003033 1.1e-08 65.9 609 23.0
MD15G1019100 Malus domestica HOM05D002790 ORTHO05D003033 1.1e-08 65.9 523 24.9
Sp5g08050 Schrenkiella parvula HOM05D002790 ORTHO05D003033 1.4e-08 65.5 196 29.1
BcaB02g07740 Brassica carinata HOM05D002790 ORTHO05D003033 1.8e-08 65.1 468 22.4
Os03g0800800 Oryza sativa ssp. japonica HOM05D002790 ORTHO05D003033 1.8e-08 65.1 146 32.2
A07p22070 Brassica napus HOM05D002790 ORTHO05D003033 2.3e-08 64.7 142 31.7
BraA07t29890Z Brassica rapa HOM05D002790 ORTHO05D003033 2.3e-08 64.7 142 31.7
Phvul.009G014000 Phaseolus vulgaris HOM05D002790 ORTHO05D003033 2.3e-08 64.7 515 23.3
Prupe.7G164200 Prunus persica HOM05D002790 ORTHO05D003033 2.3e-08 64.7 330 24.8
Aa31LG3G4680 Aethionema arabicum HOM05D002790 ORTHO05D003033 3.1e-08 64.3 317 24.0
Duzib264G1123 Durio zibethinus HOM05D002790 ORTHO05D003033 3.1e-08 64.3 478 24.3
TAR628G0961 Trochodendron aralioides HOM05D002790 ORTHO05D003033 3.1e-08 64.3 136 39.0
FAN20G0808 Fragaria x ananassa HOM05D002790 ORTHO05D003033 4.0e-08 63.9 559 23.6
Rhsim08G0036300 Rhododendron simsii HOM05D002790 ORTHO05D003033 4.0e-08 63.9 104 40.4
DCAR_016358 Daucus carota HOM05D002790 ORTHO05D003033 5.2e-08 63.5 122 37.7
Gohir.D11G186300 Gossypium hirsutum HOM05D002790 ORTHO05D003033 5.2e-08 63.5 466 24.9
PSO210G2567 Papaver somniferum HOM05D002790 ORTHO05D003033 5.2e-08 63.5 122 39.3
PSO210G6806 Papaver somniferum HOM05D002790 ORTHO05D003033 5.2e-08 63.5 122 39.3
Migut.H02489 Erythranthe guttata HOM05D002790 ORTHO05D003033 6.8e-08 63.2 487 24.6
Prupe.1G371200 Prunus persica HOM05D002790 ORTHO05D003033 8.9e-08 62.8 533 23.8
Thecc.01G024500 Theobroma cacao HOM05D002790 ORTHO05D003033 8.9e-08 62.8 513 23.2
Actinidia19233 Actinidia chinensis HOM05D002790 ORTHO05D003033 1.2e-07 62.4 226 26.1
Oeu035322.1 Olea europaea HOM05D002790 ORTHO05D003033 1.2e-07 62.4 537 23.1
Zm00001eb212750 Zea mays HOM05D002790 ORTHO05D003033 1.2e-07 62.4 135 33.3
BcaC08g44678 Brassica carinata HOM05D002790 ORTHO05D003033 1.5e-07 62.0 227 27.3
C06p22110 Brassica napus HOM05D002790 ORTHO05D003033 1.5e-07 62.0 227 27.3
BolC6t37398H Brassica oleracea HOM05D002790 ORTHO05D003033 1.5e-07 62.0 227 27.3
Cfa006932 Carpinus fangiana HOM05D002790 ORTHO05D003033 1.5e-07 62.0 299 26.8
CiPaw.07G054900 Carya illinoinensis HOM05D002790 ORTHO05D003033 1.5e-07 62.0 322 25.5
Haze_03818 Corylus avellana HOM05D002790 ORTHO05D003033 1.5e-07 62.0 489 24.1
Lsat_1_v5_gn_2_78280 Lactuca sativa HOM05D002790 ORTHO05D003033 1.5e-07 62.0 114 34.2
SalBow8G5479 Salvia bowleyana HOM05D002790 ORTHO05D003033 1.5e-07 62.0 532 23.7
BcaB02g08486 Brassica carinata HOM05D002790 ORTHO05D003033 2.0e-07 61.6 222 28.4
Cpa.g.sc6.203 Carica papaya HOM05D002790 ORTHO05D003033 2.0e-07 61.6 96 40.6
AL5G35390 Arabidopsis lyrata HOM05D002790 ORTHO05D003033 2.6e-07 61.2 143 32.2
FAN27G1378 Fragaria x ananassa HOM05D002790 ORTHO05D003033 2.6e-07 61.2 526 21.5
Peaxi162Scf01084g00013 Petunia axillaris HOM05D002790 ORTHO05D003033 2.6e-07 61.2 97 41.2
Aa31LG10G13840 Aethionema arabicum HOM05D002790 ORTHO05D003033 4.4e-07 60.5 152 31.6
Hma1.2p1_0525F.1_g172540 Hydrangea macrophylla HOM05D002790 ORTHO05D003033 4.4e-07 60.5 143 33.6
Os07g0190900 Oryza sativa ssp. japonica HOM05D002790 ORTHO05D003033 4.4e-07 60.5 95 44.2
Ciclev10000241m.g Citrus clementina HOM05D002790 ORTHO05D003033 5.8e-07 60.1 155 32.9
Glyma.06G027100 Glycine max HOM05D002790 ORTHO05D003033 5.8e-07 60.1 112 33.9
HanXRQChr14g0441551 Helianthus annuus HOM05D002790 ORTHO05D003033 5.8e-07 60.1 116 31.9
Ca_02062_v3 Cicer arietinum L. HOM05D002790 ORTHO05D003033 7.5e-07 59.7 520 24.2
MD08G1021200 Malus domestica HOM05D002790 ORTHO05D003033 7.5e-07 59.7 93 41.9
PGR102G0752 Punica granatum HOM05D002790 ORTHO05D003033 7.5e-07 59.7 337 27.6
Thhalv10010165m.g Eutrema salsugineum HOM05D002790 ORTHO05D003033 9.8e-07 59.3 470 22.6
HanXRQChr07g0191301 Helianthus annuus HOM05D002790 ORTHO05D003033 9.8e-07 59.3 112 34.8
MBI05_g05430_MAGBIO Magnolia biondii HOM05D002790 ORTHO05D003033 9.8e-07 59.3 94 41.5
RcHm_v2.0_Chr2g0100051 Rosa chinensis HOM05D002790 ORTHO05D003033 9.8e-07 59.3 93 39.8
unitig_736.g22636 Utricularia gibba HOM05D002790 ORTHO05D003033 9.8e-07 59.3 99 38.4
AT3G54350 Arabidopsis thaliana HOM05D002790 ORTHO05D003033 1.3e-06 58.9 485 23.3
Sed0020301 Sechium edule HOM05D002790 ORTHO05D003033 1.3e-06 58.9 94 39.4
Atru.chr3.755 Acer truncatum HOM05D002790 ORTHO05D003033 1.7e-06 58.5 95 42.1
CAN.G358.10 Capsicum annuum HOM05D002790 ORTHO05D003033 1.7e-06 58.5 144 34.0
Migut.C00786 Erythranthe guttata HOM05D002790 ORTHO05D003033 1.7e-06 58.5 101 33.7
FAN15G2556 Fragaria x ananassa HOM05D002790 ORTHO05D003033 1.7e-06 58.5 596 23.7
Medtr3g113050 Medicago truncatula HOM05D002790 ORTHO05D003033 1.7e-06 58.5 514 24.1
Nitab4.5_0002266g0110 Nicotiana tabacum HOM05D002790 ORTHO05D003033 1.7e-06 58.5 144 33.3
Nitab4.5_0004086g0030 Nicotiana tabacum HOM05D002790 ORTHO05D003033 1.7e-06 58.5 144 33.3
Hund17214 Selenicereus undatus HOM05D002790 ORTHO05D003033 1.7e-06 58.5 560 23.8
Cc07_g10320 Coffea canephora HOM05D002790 ORTHO05D003033 2.2e-06 58.2 571 23.5
Hund26871 Selenicereus undatus HOM05D002790 ORTHO05D003033 2.2e-06 58.2 543 23.6
arahy.Tifrunner.gnm1.ann1.NZLE3F Arachis hypogaea HOM05D002790 ORTHO05D003033 2.9e-06 57.8 486 22.8
MD02G1136400 Malus domestica HOM05D002790 ORTHO05D003033 2.9e-06 57.8 93 38.7
Sed0009107 Sechium edule HOM05D002790 ORTHO05D003033 2.9e-06 57.8 94 38.3
AUR62034560 Chenopodium quinoa HOM05D002790 ORTHO05D003033 3.7e-06 57.4 61 49.2
FAN26G0950 Fragaria x ananassa HOM05D002790 ORTHO05D003033 4.9e-06 57.0 93 38.7
SGA_v2.0_scaffold11G05865 Striga asiatica HOM05D002790 ORTHO05D003033 4.9e-06 57.0 99 36.4
ATR0681G178 Amborella trichopoda HOM05D002790 ORTHO05D003033 6.4e-06 56.6 103 35.9
FvH4_1g12250 Fragaria vesca HOM05D002790 ORTHO05D003033 6.4e-06 56.6 94 39.4
FAN19G1691 Fragaria x ananassa HOM05D002790 ORTHO05D003033 6.4e-06 56.6 94 39.4
SalBow7G4386 Salvia bowleyana HOM05D002790 ORTHO05D003033 6.4e-06 56.6 538 23.0
THA.LOC104813188 Tarenaya hassleriana HOM05D002790 ORTHO05D003033 6.4e-06 56.6 144 33.3
HanXRQChr05g0151321 Helianthus annuus HOM05D002790 ORTHO05D003033 8.3e-06 56.2 96 38.5
PSO541G0723 Papaver somniferum HOM05D002790 ORTHO05D003033 8.3e-06 56.2 494 24.5
Sopen02g029290 Solanum pennellii HOM05D002790 ORTHO05D003033 8.3e-06 56.2 144 34.7


User provided reference genes

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