Gene: AT3G54350

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54350
  • Transcript Identifier AT3G54350.3
  • Gene Type Coding gene
  • Location Chr3 : 20122298-20126031 : negative

Gene Family Information

  • ID HOM05D002790
  • #Genes/#Species 248/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54350.3
  • symbol emb1967
  • full_name embryo defective 1967
  • uniprot F4JCV6

Descriptions

  • Description Forkhead-associated (FHA) domain-containing protein
  • Computational description embryo defective 1967 (emb1967); CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT1G75530.1); Has 387 Blast hits to 260 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 23; Plants - 94; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
  • Computational description embryo defective 1967 (emb1967); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT1G75530.1); Has 387 Blast hits to 260 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 23; Plants - 94; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy
GO:0045944
IBA
Gene Ontologypositive regulation of transcription by RNA polymerase II1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0002151
IEA
Gene OntologyG-quadruplex RNA binding
GO:0002151
IEA
InterProG-quadruplex RNA binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0031011
IEA
Gene OntologyIno80 complex
GO:0031011
IEA
InterProIno80 complex
GO:0071339
IEA
Gene OntologyMLL1 complex
GO:0071339
IEA
InterProMLL1 complex
GO:0044545
IBA
Gene OntologyNSL complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000253 Forkhead-associated (FHA) domain
IPR025999 Microspherule protein, N-terminal domain
IPR037912 Microspherule protein 1
IPR008984 SMAD/FHA domain superfamily
Mapman id Description
35.1 not assigned.annotated