Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 7.4e-152 540.4 258 100.0
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 8.3e-95 350.9 288 59.0
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 4.1e-94 348.6 242 66.9
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 2.1e-93 346.3 245 67.3
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 1.4e-89 333.6 246 65.0
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.4e-89 333.6 246 65.0
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 1.4e-89 333.6 246 63.8
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 1.2e-88 330.5 246 62.2
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 2.0e-88 329.7 246 63.8
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 2.6e-88 329.3 246 62.2
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 2.6e-88 329.3 246 63.0
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 3.4e-88 328.9 246 62.2
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 5.8e-88 328.2 246 62.6
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 2.2e-87 326.2 246 62.6
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 3.7e-87 325.5 246 62.6
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 3.2e-86 322.4 246 61.0
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 9.2e-86 320.9 245 61.2
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 2.1e-85 319.7 246 63.0
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 4.6e-85 318.5 246 61.4
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 2.3e-84 316.2 246 61.4
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 2.3e-84 316.2 252 59.5
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 3.9e-84 315.5 246 60.2
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 5.1e-84 315.1 246 59.3
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 5.1e-84 315.1 245 60.4
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 6.6e-84 314.7 243 59.7
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 6.6e-84 314.7 288 55.6
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 8.6e-84 314.3 245 58.8
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 1.1e-83 313.9 245 59.6
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.5e-83 313.5 275 57.5
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 4.3e-83 312.0 245 60.0
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 4.3e-83 312.0 245 60.0
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 5.6e-83 311.6 246 60.6
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 5.6e-83 311.6 221 65.2
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.2e-82 310.5 245 58.0
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 4.7e-82 308.5 250 57.6
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 6.2e-82 308.1 246 60.2
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 6.2e-82 308.1 245 62.0
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 1.1e-81 307.4 245 59.2
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 1.1e-81 307.4 244 58.2
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 1.4e-81 307.0 246 58.5
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 3.1e-81 305.8 246 61.0
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 4.0e-81 305.4 245 60.4
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 5.2e-81 305.1 245 59.6
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 6.8e-81 304.7 246 58.5
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 8.9e-81 304.3 246 60.6
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 1.5e-80 303.5 246 58.1
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 2.6e-80 302.8 244 59.0
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 2.6e-80 302.8 245 59.6
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 3.4e-80 302.4 246 57.7
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 3.4e-80 302.4 254 57.9
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 4.4e-80 302.0 246 58.1
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 5.8e-80 301.6 245 58.4
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 5.8e-80 301.6 244 59.4
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 5.8e-80 301.6 302 51.0
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 1.3e-79 300.4 245 56.7
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 1.3e-79 300.4 246 57.3
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 3.8e-79 298.9 245 57.1
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 6.4e-79 298.1 246 57.7
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 6.4e-79 298.1 245 57.6
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 8.4e-79 297.7 245 58.0
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 1.9e-78 296.6 231 58.9
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 1.9e-78 296.6 245 58.0
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 3.2e-78 295.8 247 56.7
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 4.2e-78 295.4 246 57.3
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 5.4e-78 295.0 245 56.3
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 5.4e-78 295.0 246 56.5
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 5.4e-78 295.0 245 57.1
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 9.3e-78 294.3 230 59.6
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 9.3e-78 294.3 245 56.3
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 2.1e-77 293.1 246 55.7
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 2.1e-77 293.1 250 56.0
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 2.1e-77 293.1 249 57.0
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 2.1e-77 293.1 251 56.2
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 2.7e-77 292.7 245 57.6
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 2.7e-77 292.7 246 56.5
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 3.5e-77 292.4 245 55.1
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 4.6e-77 292.0 214 62.1
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 6.0e-77 291.6 246 57.7
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 1.3e-76 290.4 246 55.7
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 3.9e-76 288.9 225 56.4
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 5.1e-76 288.5 251 57.0
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 6.6e-76 288.1 247 57.5
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 8.7e-76 287.7 251 56.6
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 2.5e-75 286.2 297 49.5
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 3.3e-75 285.8 243 52.7
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 4.3e-75 285.4 244 56.6
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 5.6e-75 285.0 230 57.4
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 3.1e-73 279.3 245 51.8
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 2.0e-72 276.6 246 56.1
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 2.6e-72 276.2 268 51.9
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 2.9e-71 272.7 249 54.2
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 4.2e-70 268.9 250 52.4
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 1.3e-68 263.8 204 59.8
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 3.0e-68 262.7 249 49.8
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 7.3e-67 258.1 246 51.2
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 2.4e-65 253.1 250 52.4
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.3e-63 247.3 180 61.7
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 4.8e-50 202.2 155 57.4
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 1.5e-48 197.2 227 44.5
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 2.2e-47 193.4 157 56.7
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.5e-45 186.0 267 41.9
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 1.9e-43 180.3 150 54.7
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 3.4e-40 169.5 147 51.7
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 2.3e-36 156.8 138 51.4
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 3.9e-36 156.0 112 63.4
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 2.0e-35 153.7 190 45.3
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 9.1e-33 144.8 107 63.6
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 7.2e-22 108.6 75 66.7
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 1.5e-19 100.9 97 52.6
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 1.3e-18 97.8 159 37.7
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 2.7e-16 90.1 232 26.3
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 3.5e-16 89.7 62 71.0
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 4.5e-16 89.4 235 25.1
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 2.2e-15 87.0 205 26.8
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 3.8e-15 86.3 228 25.9
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 5.0e-15 85.9 227 25.1
MBI19_g20792_MAGBIO Magnolia biondii HOM05D005005 ORTHO05D006178 5.0e-15 85.9 233 24.9
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 5.0e-15 85.9 205 26.8
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 1.1e-14 84.7 205 26.8
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 1.1e-14 84.7 227 25.1
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 1.5e-14 84.3 205 26.8
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 2.5e-14 83.6 235 25.5
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 4.2e-14 82.8 210 26.7
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 5.5e-14 82.4 208 26.0
PSO384G4770 Papaver somniferum HOM05D005005 ORTHO05D006178 7.2e-14 82.0 207 25.1
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.6e-13 80.9 69 60.9
PSO339G0382 Papaver somniferum HOM05D005005 ORTHO05D006178 1.6e-13 80.9 207 24.6
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 4.7e-13 79.3 205 24.4
ClCG08G002660 Citrullus lanatus HOM05D005005 ORTHO05D006178 1.0e-12 78.2 210 24.8
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 1.8e-12 77.4 253 24.1
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 2.6e-11 73.6 225 23.6
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 3.4e-11 73.2 68 51.5
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 4.4e-11 72.8 62 48.4
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 7.5e-11 72.0 72 50.0
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.3e-10 71.2 210 25.2
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 1.7e-10 70.9 43 72.1
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 3.7e-10 69.7 69 49.3
Ciclev10027071m.g Citrus clementina HOM05D005005 ORTHO05D006178 4.1e-09 66.2 207 23.7
Ciclev10027488m.g Citrus clementina HOM05D005005 ORTHO05D006178 4.1e-09 66.2 207 23.7
CDE02G0295 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.6e-08 64.3 215 22.3
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 2.7e-08 63.5 67 50.7
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 3.8e-07 59.7 34 61.8


User provided reference genes

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