Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_013042 Daucus carota HOM05D000179 ORTHO05D000107 6.8e-142 507.3 253 100.0
Potri.017G017100 Populus trichocarpa HOM05D000179 ORTHO05D000107 1.3e-47 194.1 271 46.5
Cc05_g07790 Coffea canephora HOM05D000179 ORTHO05D000107 5.4e-46 188.7 256 46.9
Manes.13G141500 Manihot esculenta HOM05D000179 ORTHO05D000107 7.3e-43 178.3 282 43.3
Potri.007G135000 Populus trichocarpa HOM05D000179 ORTHO05D000107 9.5e-43 177.9 272 44.1
CSS0027321 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.6e-42 177.2 271 48.0
CSS0039438 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 3.6e-42 176.0 263 47.5
Lalb_Chr03g0029671 Lupinus albus HOM05D000179 ORTHO05D000107 3.0e-41 172.9 274 45.3
QL08p040636 Quercus lobata HOM05D000179 ORTHO05D000107 1.5e-40 170.6 269 46.5
Sabra17G0013300 Salix brachista HOM05D000179 ORTHO05D000107 1.5e-40 170.6 273 42.5
Manes.12G086200 Manihot esculenta HOM05D000179 ORTHO05D000107 2.6e-40 169.9 283 43.1
TAR627G0370 Trochodendron aralioides HOM05D000179 ORTHO05D000107 2.6e-40 169.9 271 46.1
Dinv06851 Davidia involucrata HOM05D000179 ORTHO05D000107 3.4e-40 169.5 266 47.4
Thecc.02G187400 Theobroma cacao HOM05D000179 ORTHO05D000107 1.3e-39 167.5 266 46.6
Duzib132G0549 Durio zibethinus HOM05D000179 ORTHO05D000107 2.2e-39 166.8 270 45.9
COL.COLO4_37679 Corchorus olitorius HOM05D000179 ORTHO05D000107 4.9e-39 165.6 264 47.7
Gohir.D02G177200 Gossypium hirsutum HOM05D000179 ORTHO05D000107 4.9e-39 165.6 260 46.2
Gohir.A03G154300 Gossypium hirsutum HOM05D000179 ORTHO05D000107 3.2e-38 162.9 260 46.2
Gorai.005G198900 Gossypium raimondii HOM05D000179 ORTHO05D000107 7.0e-38 161.8 260 45.8
Aqoxy4G00602 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 6.0e-37 158.7 270 42.2
Lalb_Chr01g0005051 Lupinus albus HOM05D000179 ORTHO05D000107 7.8e-37 158.3 273 42.5
Gohir.D12G144000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.3e-36 157.5 264 43.6
Lj3g0015548 Lotus japonicus HOM05D000179 ORTHO05D000107 1.3e-36 157.5 282 40.8
Lalb_Chr19g0135071 Lupinus albus HOM05D000179 ORTHO05D000107 1.7e-36 157.1 276 41.3
Atru.chr6.2924 Acer truncatum HOM05D000179 ORTHO05D000107 2.3e-36 156.8 283 39.6
Gorai.008G155300 Gossypium raimondii HOM05D000179 ORTHO05D000107 3.9e-36 156.0 264 43.2
Peaxi162Scf00845g00005 Petunia axillaris HOM05D000179 ORTHO05D000107 6.6e-36 155.2 273 44.3
Cfa014667 Carpinus fangiana HOM05D000179 ORTHO05D000107 1.9e-35 153.7 255 44.3
Haze_13257 Corylus avellana HOM05D000179 ORTHO05D000107 2.5e-35 153.3 250 45.2
TWI59G0817 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 4.3e-35 152.5 273 43.6
GSVIVG01020612001 Vitis vinifera HOM05D000179 ORTHO05D000107 4.3e-35 152.5 250 47.2
CiPaw.04G129300 Carya illinoinensis HOM05D000179 ORTHO05D000107 5.6e-35 152.1 269 44.6
Lalb_Chr14g0367181 Lupinus albus HOM05D000179 ORTHO05D000107 6.2e-34 148.7 274 42.7
Gohir.A12G139500 Gossypium hirsutum HOM05D000179 ORTHO05D000107 8.0e-34 148.3 264 42.8
CiPaw.03G182500 Carya illinoinensis HOM05D000179 ORTHO05D000107 2.3e-33 146.7 269 42.4
Cpa.g.c36910 Carica papaya HOM05D000179 ORTHO05D000107 5.2e-33 145.6 284 41.2
MSTRG.15126 Avicennia marina HOM05D000179 ORTHO05D000107 1.5e-32 144.1 278 40.6
TPR.G14263 Trifolium pratense HOM05D000179 ORTHO05D000107 3.4e-32 142.9 271 41.0
Dinv04584 Davidia involucrata HOM05D000179 ORTHO05D000107 4.4e-32 142.5 271 44.3
Lj1A708T20 Lonicera japonica HOM05D000179 ORTHO05D000107 7.5e-32 141.7 258 41.1
Ciclev10015043m.g Citrus clementina HOM05D000179 ORTHO05D000107 9.8e-32 141.4 278 41.7
CSS0046960 Camellia sinensis var. sinensis HOM05D000179 ORTHO05D000107 1.3e-31 141.0 184 51.1
Oeu047869.1 Olea europaea HOM05D000179 ORTHO05D000107 1.9e-30 137.1 274 40.9
VMungo1080G0780 Vigna mungo HOM05D000179 ORTHO05D000107 2.4e-30 136.7 277 40.8
FAN09G2011 Fragaria x ananassa HOM05D000179 ORTHO05D000107 3.2e-30 136.3 281 39.5
FAN05G4351 Fragaria x ananassa HOM05D000179 ORTHO05D000107 4.1e-30 136.0 281 39.1
RcHm_v2.0_Chr2g0128541 Rosa chinensis HOM05D000179 ORTHO05D000107 5.4e-30 135.6 279 40.1
Ca_18917_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 1.2e-29 134.4 282 38.3
FAN14G5733 Fragaria x ananassa HOM05D000179 ORTHO05D000107 1.6e-29 134.0 281 38.4
Glyma.06G287200 Glycine max HOM05D000179 ORTHO05D000107 2.7e-29 133.3 266 39.8
Oeu016005.1 Olea europaea HOM05D000179 ORTHO05D000107 2.7e-29 133.3 282 40.1
FvH4_6g26760 Fragaria vesca HOM05D000179 ORTHO05D000107 3.5e-29 132.9 281 38.1
Nn1g06399 Nelumbo nucifera HOM05D000179 ORTHO05D000107 3.5e-29 132.9 258 41.5
Phvul.005G099800 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 3.5e-29 132.9 267 39.3
FAN02G0187 Fragaria x ananassa HOM05D000179 ORTHO05D000107 6.0e-29 132.1 277 37.5
MBI06_g42696_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 6.0e-29 132.1 272 40.4
MBI06_g45915_MAGBIO Magnolia biondii HOM05D000179 ORTHO05D000107 6.0e-29 132.1 272 40.4
PSO675G6655 Papaver somniferum HOM05D000179 ORTHO05D000107 6.0e-29 132.1 277 39.4
Nitab4.5_0022126g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 1.3e-28 131.0 270 41.1
Lj3g0001553 Lotus japonicus HOM05D000179 ORTHO05D000107 1.7e-28 130.6 286 37.8
PSO541G2839 Papaver somniferum HOM05D000179 ORTHO05D000107 3.0e-28 129.8 278 38.8
TAR624G0041 Trochodendron aralioides HOM05D000179 ORTHO05D000107 3.0e-28 129.8 258 46.5
arahy.Tifrunner.gnm1.ann1.IGV1QM Arachis hypogaea HOM05D000179 ORTHO05D000107 8.6e-28 128.3 285 38.2
Oeu022440.1 Olea europaea HOM05D000179 ORTHO05D000107 8.6e-28 128.3 276 38.0
Glyma.12G118800 Glycine max HOM05D000179 ORTHO05D000107 1.1e-27 127.9 258 38.8
Glyma.12G207200 Glycine max HOM05D000179 ORTHO05D000107 1.1e-27 127.9 273 39.2
Psat5g274000 Pisum sativum HOM05D000179 ORTHO05D000107 1.5e-27 127.5 262 40.1
arahy.Tifrunner.gnm1.ann1.TQHX8C Arachis hypogaea HOM05D000179 ORTHO05D000107 1.9e-27 127.1 286 38.5
Phvul.011G123200 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 1.9e-27 127.1 253 39.1
Glyma.13G293800 Glycine max HOM05D000179 ORTHO05D000107 7.3e-27 125.2 272 38.6
TWI14G1092 Tripterygium wilfordii HOM05D000179 ORTHO05D000107 9.5e-27 124.8 260 42.7
CAN.G1808.6 Capsicum annuum HOM05D000179 ORTHO05D000107 2.1e-26 123.6 291 37.1
Actinidia10994 Actinidia chinensis HOM05D000179 ORTHO05D000107 2.8e-26 123.2 262 39.7
arahy.Tifrunner.gnm1.ann1.16I18L Arachis hypogaea HOM05D000179 ORTHO05D000107 6.2e-26 122.1 246 39.4
Medtr2g090745 Medicago truncatula HOM05D000179 ORTHO05D000107 8.1e-26 121.7 254 39.8
Aqoxy1G02296 Aquilegia oxysepala HOM05D000179 ORTHO05D000107 3.1e-25 119.8 273 38.1
VMungo1127G0441 Vigna mungo HOM05D000179 ORTHO05D000107 3.1e-25 119.8 255 37.3
Lsat_1_v5_gn_4_66301 Lactuca sativa HOM05D000179 ORTHO05D000107 8.9e-25 118.2 266 37.6
vmacro12350 Vaccinium macrocarpon HOM05D000179 ORTHO05D000107 8.9e-25 118.2 247 38.5
Sopen07g027520 Solanum pennellii HOM05D000179 ORTHO05D000107 1.2e-24 117.9 302 35.4
Atru.chr6.2862 Acer truncatum HOM05D001387 ORTHO05D000107 2.6e-24 116.7 198 40.9
Psat0s283g0040 Pisum sativum HOM05D000179 ORTHO05D000107 2.6e-24 116.7 195 43.1
Hund01009 Selenicereus undatus HOM05D000179 ORTHO05D000107 5.8e-24 115.5 290 35.9
arahy.Tifrunner.gnm1.ann1.H5QJF0 Arachis hypogaea HOM05D000179 ORTHO05D000107 9.9e-24 114.8 247 36.8
Eucgr.K01062 Eucalyptus grandis HOM05D000179 ORTHO05D000107 2.2e-23 113.6 294 35.0
Phvul.011G115245 Phaseolus vulgaris HOM05D000179 ORTHO05D000107 2.2e-23 113.6 253 36.4
HanXRQChr05g0140401 Helianthus annuus HOM05D000179 ORTHO05D000107 8.3e-23 111.7 260 35.8
Solyc07g053570.4 Solanum lycopersicum HOM05D000179 ORTHO05D000107 1.1e-22 111.3 305 35.1
THA.LOC104814514 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 1.1e-22 111.3 275 36.0
arahy.Tifrunner.gnm1.ann1.5RS65W Arachis hypogaea HOM05D000179 ORTHO05D000107 1.4e-22 110.9 246 38.2
Sp1g02700 Schrenkiella parvula HOM05D000179 ORTHO05D000107 1.9e-22 110.5 241 37.8
THA.LOC104826041 Tarenaya hassleriana HOM05D000179 ORTHO05D000107 1.9e-22 110.5 231 40.3
TAR626G1149 Trochodendron aralioides HOM05D000179 ORTHO05D000107 2.4e-22 110.2 234 44.4
Ca_17939_v3 Cicer arietinum L. HOM05D000179 ORTHO05D000107 4.1e-22 109.4 256 36.3
Nitab4.5_0005191g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 1.2e-21 107.8 278 38.1
arahy.Tifrunner.gnm1.ann1.6Z1LR7 Arachis hypogaea HOM05D000179 ORTHO05D000107 2.1e-21 107.1 246 37.8
AL1G13400 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 2.7e-21 106.7 246 36.6
Nn1g04251 Nelumbo nucifera HOM05D000179 ORTHO05D000107 3.5e-21 106.3 190 45.3
SalBow7G3562 Salvia bowleyana HOM05D000179 ORTHO05D000107 3.5e-21 106.3 219 41.1
SalBow7G0051 Salvia bowleyana HOM05D000179 ORTHO05D000107 7.8e-21 105.1 219 40.6
PGR142G2299 Punica granatum HOM05D000179 ORTHO05D000107 5.1e-20 102.4 259 35.5
BcaC05g24502 Brassica carinata HOM05D000179 ORTHO05D000107 6.6e-20 102.1 242 37.2
Thhalv10009734m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 6.6e-20 102.1 248 35.1
Sc12g0003260 Simmondsia chinensis HOM05D000179 ORTHO05D000107 8.6e-20 101.7 262 37.0
BcaC06g31647 Brassica carinata HOM05D000179 ORTHO05D000107 1.1e-19 101.3 256 35.2
ClCG02G002310 Citrullus lanatus HOM05D000179 ORTHO05D000107 1.1e-19 101.3 218 37.6
CARHR003170 Cardamine hirsuta HOM05D000179 ORTHO05D000107 1.5e-19 100.9 244 37.3
PGSC0003DMG400009382 Solanum tuberosum HOM05D000179 ORTHO05D000107 1.9e-19 100.5 292 33.6
A09p68200 Brassica napus HOM05D000179 ORTHO05D000107 2.5e-19 100.1 235 36.6
BraA09t42155Z Brassica rapa HOM05D000179 ORTHO05D000107 2.5e-19 100.1 235 36.6
EL10Ac9g20826 Beta vulgaris HOM05D000179 ORTHO05D000107 3.3e-19 99.8 296 31.8
Carub.0001s0296 Capsella rubella HOM05D000179 ORTHO05D000107 5.6e-19 99.0 279 35.8
BraA06t27613Z Brassica rapa HOM05D000179 ORTHO05D000107 7.3e-19 98.6 154 45.5
RcHm_v2.0_Chr0c19g0500141 Rosa chinensis HOM05D000179 ORTHO05D000107 7.3e-19 98.6 130 51.5
C07p26850 Brassica napus HOM05D000179 ORTHO05D000107 1.6e-18 97.4 156 44.2
Migut.M00153 Erythranthe guttata HOM05D000179 ORTHO05D000107 1.6e-18 97.4 236 39.8
AT1G03840 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 2.1e-18 97.1 263 33.5
BcaC06g34586 Brassica carinata HOM05D000179 ORTHO05D000107 4.7e-18 95.9 155 44.5
BolC8t52790H Brassica oleracea HOM05D000179 ORTHO05D000107 4.7e-18 95.9 241 34.4
A06p47430 Brassica napus HOM05D000179 ORTHO05D000107 6.2e-18 95.5 154 44.8
C08p52640 Brassica napus HOM05D000179 ORTHO05D000107 1.4e-17 94.4 236 34.7
A10p02370 Brassica napus HOM05D000179 ORTHO05D000107 2.4e-17 93.6 238 34.9
CARHR179110 Cardamine hirsuta HOM05D000179 ORTHO05D000107 4.0e-17 92.8 232 36.2
Carub.0008s0436 Capsella rubella HOM05D000179 ORTHO05D000107 5.2e-17 92.4 158 44.9
AT5G44160 Arabidopsis thaliana HOM05D000179 ORTHO05D000107 1.2e-16 91.3 136 44.1
BolC5t28996H Brassica oleracea HOM05D000179 ORTHO05D000107 1.5e-16 90.9 207 39.6
C05p02180 Brassica napus HOM05D000179 ORTHO05D000107 9.9e-16 88.2 202 38.1
BcaC05g24500 Brassica carinata HOM05D000179 ORTHO05D000107 1.3e-15 87.8 258 31.4
CANSAT64G1274 Cannabis sativa HOM05D000179 ORTHO05D000107 1.3e-15 87.8 174 43.1
Aa31LG1G9050 Aethionema arabicum HOM05D000179 ORTHO05D000107 1.7e-15 87.4 259 33.2
Sp2g08990 Schrenkiella parvula HOM05D000179 ORTHO05D000107 2.2e-15 87.0 175 42.3
CANSAT64G1845 Cannabis sativa HOM05D000179 ORTHO05D000107 2.9e-15 86.7 186 41.9
SalBow7G1227 Salvia bowleyana HOM05D000179 ORTHO05D000107 2.9e-15 86.7 225 33.3
Sed0020343 Sechium edule HOM05D000179 ORTHO05D000107 3.8e-15 86.3 203 36.0
AL8G15860 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 6.4e-15 85.5 140 42.1
CsaV3_7G003130 Cucumis sativus L. HOM05D000179 ORTHO05D000107 6.4e-15 85.5 183 33.3
ECA234G0982 Erigeron canadensis HOM05D000179 ORTHO05D000107 8.4e-15 85.1 271 30.6
SalBow7G0013 Salvia bowleyana HOM05D000179 ORTHO05D000107 1.4e-14 84.3 141 41.8
MELO3C018864.2 Cucumis melo HOM05D000179 ORTHO05D000107 1.9e-14 84.0 216 34.7
Thhalv10003218m.g Eutrema salsugineum HOM05D000179 ORTHO05D000107 7.1e-14 82.0 136 46.3
SGA_v2.0_scaffold70G23482 Striga asiatica HOM05D000179 ORTHO05D000107 2.1e-13 80.5 240 32.5
BcaC07g42226 Brassica carinata HOM05D000179 ORTHO05D000107 3.5e-13 79.7 227 32.6
BcaC03g16630 Brassica carinata HOM05D000179 ORTHO05D000107 1.3e-12 77.8 151 39.1
C02p44640 Brassica napus HOM05D000179 ORTHO05D000107 1.3e-12 77.8 151 39.1
BcaC05g24503 Brassica carinata HOM05D000179 ORTHO05D000107 1.1e-11 74.7 130 44.6
Prupe.3G128100 Prunus persica HOM05D000179 ORTHO05D000107 1.6e-10 70.9 258 31.8
Aa31LG5G3080 Aethionema arabicum HOM05D000179 ORTHO05D000107 8.1e-10 68.6 228 29.4
AUR62036065 Chenopodium quinoa HOM05D000179 ORTHO05D000107 1.1e-09 68.2 162 34.6
MELO3C019330.2 Cucumis melo HOM05D000179 ORTHO05D000107 1.8e-09 67.4 152 38.8
Manes.11G142900 Manihot esculenta HOM05D000179 ORTHO05D000107 2.4e-09 67.0 264 28.8
AUR62038988 Chenopodium quinoa HOM05D000179 ORTHO05D000107 3.1e-09 66.6 160 35.0
Sed0007050 Sechium edule HOM05D000179 ORTHO05D000107 6.9e-09 65.5 140 40.7
CsaV3_2G034490 Cucumis sativus L. HOM05D000179 ORTHO05D000107 1.5e-08 64.3 146 39.0
CDE10G0130 Ceratophyllum demersum HOM05D000179 ORTHO05D000107 2.2e-07 60.5 244 29.5
ClCG02G010310 Citrullus lanatus HOM05D000179 ORTHO05D000107 2.9e-07 60.1 148 33.8
GSVIVG01025658001 Vitis vinifera HOM05D000179 ORTHO05D000107 2.9e-07 60.1 187 33.2
Rhsim05G0183000 Rhododendron simsii HOM05D000179 ORTHO05D000107 1.4e-06 57.8 226 27.0
Nn2g10748 Nelumbo nucifera HOM05D000179 ORTHO05D000107 1.9e-06 57.4 117 37.6
Os01g0242200 Oryza sativa ssp. japonica HOM05D000179 ORTHO05D000107 2.4e-06 57.0 184 31.5
PGSC0003DMG400022141 Solanum tuberosum HOM05D000179 ORTHO05D000107 2.4e-06 57.0 71 42.3
ATR0681G091 Amborella trichopoda HOM05D000179 ORTHO05D000107 4.2e-06 56.2 182 30.8
Manes.08G005700 Manihot esculenta HOM05D000179 ORTHO05D000107 7.1e-06 55.5 254 28.7
Zm00001eb339510 Zea mays HOM05D000179 ORTHO05D000107 7.1e-06 55.5 149 36.2


User provided reference genes

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