Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 2.0e-247 858.6 428 100.0
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 3.3e-181 638.6 425 73.6
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 3.1e-179 632.1 430 73.3
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 7.7e-178 627.5 425 72.0
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 2.9e-177 625.5 427 72.4
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 3.8e-177 625.2 428 72.0
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 6.5e-177 624.4 431 72.6
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 3.2e-176 622.1 428 72.2
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 1.6e-175 619.8 428 71.5
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 3.6e-175 618.6 428 71.3
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 7.9e-175 617.5 428 71.7
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 1.0e-174 617.1 428 69.6
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 1.8e-174 616.3 428 69.6
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 1.8e-174 616.3 429 69.7
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 2.3e-174 615.9 432 69.9
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 3.9e-174 615.1 428 70.8
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 6.7e-174 614.4 428 70.3
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 1.9e-173 612.8 428 70.3
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 5.7e-173 611.3 428 70.3
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 1.3e-172 610.1 428 69.4
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.7e-172 609.8 428 70.3
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 3.7e-172 608.6 429 70.2
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 4.8e-172 608.2 428 68.7
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 6.3e-172 607.8 428 68.9
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 8.2e-172 607.4 428 69.4
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 1.4e-171 606.7 428 69.6
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.8e-171 606.3 426 69.2
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 2.4e-171 605.9 428 69.9
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 3.1e-171 605.5 428 69.9
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 6.9e-171 604.4 400 74.8
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 6.9e-171 604.4 428 69.6
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 6.9e-171 604.4 428 68.9
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 9.1e-171 604.0 428 68.9
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 2.6e-170 602.4 418 70.8
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 4.5e-170 601.7 427 68.9
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 4.5e-170 601.7 428 67.8
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 4.5e-170 601.7 428 68.7
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 5.9e-170 601.3 429 69.7
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 2.9e-169 599.0 428 68.2
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 1.4e-168 596.7 428 69.4
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 1.9e-168 596.3 428 68.0
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 1.9e-168 596.3 427 68.1
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 2.5e-168 595.9 437 68.0
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 2.5e-168 595.9 428 67.5
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 3.2e-168 595.5 437 68.0
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 5.5e-168 594.7 428 68.7
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 9.4e-168 594.0 427 68.6
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 9.4e-168 594.0 427 68.4
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 4.7e-167 591.7 427 67.7
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 1.8e-166 589.7 416 70.9
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 3.9e-166 588.6 428 68.5
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 6.7e-166 587.8 428 68.2
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 1.1e-165 587.0 459 63.8
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 3.3e-165 585.5 428 67.1
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.8e-164 582.4 447 65.1
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.8e-164 582.4 447 65.1
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 2.8e-164 582.4 428 67.8
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 4.8e-164 581.6 424 67.5
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 8.2e-164 580.9 428 66.1
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 1.1e-163 580.5 428 66.4
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 2.4e-163 579.3 428 67.3
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 4.1e-163 578.6 428 65.9
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 5.3e-163 578.2 429 66.2
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 9.1e-163 577.4 428 67.3
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 1.0e-161 573.9 519 58.4
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 1.7e-161 573.2 428 66.8
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 3.2e-160 568.9 428 65.9
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 3.2e-160 568.9 412 67.5
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 3.2e-160 568.9 432 65.0
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 3.2e-160 568.9 434 66.1
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 9.4e-160 567.4 428 65.9
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 4.7e-159 565.1 428 65.2
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 8.0e-159 564.3 428 65.0
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 2.3e-158 562.8 433 64.4
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 3.9e-158 562.0 425 63.8
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 3.3e-157 558.9 435 63.9
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.3e-157 558.9 405 68.4
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 2.2e-156 556.2 428 64.5
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 2.8e-156 555.8 428 64.5
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 1.1e-155 553.9 433 62.4
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 9.1e-155 550.8 428 64.7
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 2.6e-154 549.3 428 63.1
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 2.5e-152 542.7 431 61.3
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 1.0e-150 537.3 431 62.6
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 5.2e-150 535.0 438 61.9
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 2.8e-148 529.3 428 62.1
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 2.4e-147 526.2 427 60.7
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 5.3e-147 525.0 428 61.9
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.5e-146 522.3 441 58.7
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 3.7e-140 502.3 333 73.6
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 2.5e-136 489.6 427 58.5
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 2.8e-135 486.1 637 44.0
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.6e-133 479.6 438 57.1
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 8.3e-132 474.6 506 52.2
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 4.4e-125 452.2 428 55.6
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 5.8e-125 451.8 435 52.6
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.9e-120 436.8 430 51.6
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.5e-117 427.2 444 49.5
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 1.1e-102 377.9 314 61.1
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 1.6e-95 354.0 225 76.0
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 3.6e-95 352.8 334 56.0
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 6.2e-95 352.1 231 75.3
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 2.4e-94 350.1 218 78.4
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 2.1e-66 257.3 210 61.4
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 2.1e-66 257.3 291 46.4
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 3.3e-64 250.0 164 72.0
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 2.8e-63 246.9 173 70.5
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 3.7e-63 246.5 395 35.9
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 5.9e-61 239.2 206 60.2
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 8.0e-34 149.1 142 53.5
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.4e-33 148.3 142 53.5
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 4.5e-29 133.3 110 60.0
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 7.7e-29 132.5 85 70.6
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 5.5e-27 126.3 106 63.2
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 4.9e-23 113.2 97 57.7
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 1.9e-19 101.3 77 66.2
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 2.8e-18 97.4 79 64.6
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 4.7e-18 96.7 77 66.2
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 1.7e-15 88.2 53 73.6
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 9.5e-11 72.4 41 80.5
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 9.5e-11 72.4 44 68.2
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 1.2e-08 65.5 36 77.8
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 8.3e-07 59.3 46 60.9
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 1.1e-06 58.9 47 66.0
CDE05G2763 Ceratophyllum demersum HOM05D004198 ORTHO05D130465 9.2e-06 55.8 82 36.6
MBI12_g24383_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D004199 9.2e-06 55.8 36 72.2


User provided reference genes

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