Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 0.0e+00 1163.3 563 100.0
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 3.8e-286 987.6 550 84.9
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 5.5e-285 983.8 564 83.5
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.2e-284 982.6 539 86.6
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.6e-284 981.1 558 84.4
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 6.1e-284 980.3 546 85.2
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 3.7e-281 971.1 557 83.1
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 1.2e-279 966.1 558 82.3
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 7.7e-279 963.4 555 82.9
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.7e-278 962.2 550 83.1
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 2.9e-278 961.4 555 82.7
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 2.9e-278 961.4 558 82.4
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 2.9e-278 961.4 561 81.3
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 3.8e-278 961.1 546 83.3
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 5.5e-277 957.2 554 81.8
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 7.2e-277 956.8 558 80.8
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 9.5e-277 956.4 546 83.3
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.6e-276 955.7 524 85.7
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 4.7e-276 954.1 541 83.0
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 4.7e-276 954.1 561 81.3
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 8.0e-276 953.4 540 84.6
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 6.8e-275 950.3 546 81.7
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 8.9e-275 949.9 561 80.9
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.2e-274 949.5 561 80.9
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.5e-274 949.1 536 83.2
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 5.7e-274 947.2 557 80.8
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 4.9e-273 944.1 534 83.3
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.9e-273 944.1 567 80.2
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.1e-272 943.0 546 82.2
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.4e-272 942.6 535 83.2
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 2.4e-272 941.8 534 83.0
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 5.4e-272 940.6 534 82.8
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 3.5e-271 937.9 548 81.4
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.0e-270 936.4 547 80.6
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.7e-270 935.6 547 80.8
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 2.3e-270 935.3 546 80.4
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.9e-269 932.2 563 79.4
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 4.3e-269 931.0 535 81.5
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.1e-268 928.7 540 80.7
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 4.7e-268 927.5 546 79.9
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 2.3e-267 925.2 546 79.7
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 4.0e-267 924.5 555 80.0
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.5e-266 922.5 544 81.2
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 2.6e-266 921.8 549 79.1
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 3.4e-266 921.4 560 77.1
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 4.4e-266 921.0 558 78.1
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 2.9e-265 918.3 560 77.7
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.9e-265 917.5 546 80.8
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 4.9e-265 917.5 545 80.0
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 5.4e-264 914.1 555 76.9
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 6.0e-263 910.6 566 76.7
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 3.9e-262 907.9 533 81.6
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 9.5e-261 903.3 536 80.0
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 9.5e-261 903.3 543 77.7
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 1.6e-260 902.5 558 76.2
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 2.1e-260 902.1 541 79.9
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 6.2e-260 900.6 547 79.0
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 1.8e-259 899.0 574 74.4
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.8e-259 899.0 546 75.5
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 1.8e-259 899.0 556 76.8
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 3.1e-259 898.3 543 78.5
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 1.2e-258 896.3 546 75.8
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.5e-258 896.0 535 77.6
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 4.4e-258 894.4 546 76.6
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.3e-257 892.9 531 80.0
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.7e-257 892.5 560 75.0
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 2.2e-257 892.1 517 81.0
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 6.4e-257 890.6 546 75.5
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 8.3e-257 890.2 549 75.6
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 1.1e-256 889.8 535 77.4
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.1e-256 889.8 549 76.7
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.4e-256 889.4 555 76.0
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 2.4e-256 888.6 560 74.8
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 1.6e-255 885.9 546 75.8
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 1.6e-255 885.9 564 74.3
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.7e-255 885.2 549 76.1
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 6.0e-255 884.0 548 75.4
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 7.8e-255 883.6 555 74.2
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.7e-254 882.5 540 77.0
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.3e-254 882.1 546 75.5
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 3.0e-254 881.7 558 76.3
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 3.9e-254 881.3 550 75.1
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 8.6e-254 880.2 555 75.0
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 8.6e-254 880.2 550 75.1
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 7.3e-253 877.1 548 75.2
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 9.5e-253 876.7 546 75.5
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 4.4e-250 867.8 542 75.8
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 5.8e-250 867.5 542 75.6
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 9.9e-250 866.7 558 73.3
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.7e-249 865.9 555 73.5
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 2.9e-249 865.1 543 77.3
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 2.9e-249 865.1 546 74.0
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 6.4e-249 864.0 551 73.9
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 6.4e-249 864.0 551 73.9
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 1.9e-248 862.4 551 73.9
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 3.2e-248 861.7 551 73.9
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 4.1e-248 861.3 548 74.1
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.2e-247 859.8 540 78.0
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 1.6e-247 859.4 550 74.0
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 2.1e-247 859.0 546 74.4
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 2.1e-247 859.0 546 74.4
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 3.5e-247 858.2 546 74.2
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 4.6e-247 857.8 550 74.0
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.0e-246 856.7 580 73.4
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 1.1e-245 853.2 546 73.6
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 2.5e-245 852.0 545 74.9
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 5.6e-245 850.9 547 73.3
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.2e-242 843.2 549 76.1
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 5.8e-242 840.9 514 77.4
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 8.4e-241 837.0 546 72.7
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 3.2e-240 835.1 495 80.2
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 6.0e-239 830.9 518 75.5
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.3e-238 829.7 543 72.6
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 2.3e-238 828.9 544 72.4
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 5.1e-238 827.8 530 76.6
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 8.4e-233 810.4 517 72.9
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.1e-231 805.8 546 70.9
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 1.1e-229 800.0 518 74.9
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.8e-228 795.4 500 76.8
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.5e-226 788.1 546 71.6
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 5.8e-226 787.7 521 74.3
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 1.6e-223 779.6 561 68.1
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 1.9e-216 756.1 565 66.4
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.2e-210 736.9 475 75.4
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 7.2e-192 674.5 558 61.3
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 2.3e-190 669.5 543 61.7
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 3.0e-190 669.1 563 60.9
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.1e-187 660.6 563 59.7
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.3e-185 653.7 416 76.0
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 3.3e-152 542.7 346 77.7
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 6.8e-134 481.9 319 73.4
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 9.9e-133 478.0 278 79.5
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.3e-132 477.6 348 68.7
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 3.4e-125 453.0 263 85.2
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.0e-121 441.4 521 48.9
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 1.1e-120 438.0 339 65.2
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.5e-109 401.0 294 67.3
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.1e-102 378.3 217 75.1
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.0e-97 360.1 217 79.7
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 3.0e-97 360.1 288 61.5
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.2e-90 338.2 285 61.1
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.4e-86 324.7 227 71.4
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 1.1e-80 305.1 566 33.7
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 2.4e-78 297.4 198 71.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.6e-74 283.5 203 68.0
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.8e-62 244.6 145 73.1
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 1.0e-60 238.8 439 32.1
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 2.0e-56 224.6 228 47.8
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.1e-43 182.2 117 71.8
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 8.6e-36 156.0 123 56.9
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 2.4e-30 137.9 100 65.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.9e-28 130.6 106 55.7
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.0e-28 130.2 100 60.0
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 7.3e-27 126.3 101 57.4
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.1e-25 122.5 148 43.9
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 2.4e-22 111.3 131 48.1
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.5e-21 107.5 54 81.5
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 6.8e-17 93.2 56 75.0
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.1e-09 69.3 43 69.8
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 2.6e-08 64.7 63 39.7
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 4.4e-08 63.9 58 55.2
Thhalv10017563m.g Eutrema salsugineum HOM05D000157 ORTHO05D004871 3.8e-07 60.8 55 43.6
FvH4_6g11150 Fragaria vesca HOM05D009507 ORTHO05D022560 3.8e-07 60.8 77 32.5
FAN14G0535 Fragaria x ananassa HOM05D009507 ORTHO05D022560 3.8e-07 60.8 77 32.5
FAN27G2732 Fragaria x ananassa HOM05D000082 ORTHO05D000038 8.4e-07 59.7 76 32.9
TWI75G0506 Tripterygium wilfordii HOM05D000082 ORTHO05D000038 8.4e-07 59.7 102 34.3
AL4G31460 Arabidopsis lyrata HOM05D000157 ORTHO05D004871 1.4e-06 58.9 55 41.8
AT2G35420 Arabidopsis thaliana HOM05D000157 ORTHO05D004871 1.4e-06 58.9 55 41.8
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 1.4e-06 58.9 70 35.7
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 1.9e-06 58.5 56 44.6
FvH4_6g11580 Fragaria vesca HOM05D025326 ORTHO05D000038 3.2e-06 57.8 65 41.5
FAN14G5318 Fragaria x ananassa HOM05D025326 ORTHO05D000038 3.2e-06 57.8 65 41.5
FAN14G5673 Fragaria x ananassa HOM05D025326 ORTHO05D000038 3.2e-06 57.8 65 41.5
Gohir.A04G051300 Gossypium hirsutum HOM05D000341 ORTHO05D001197 3.2e-06 57.8 97 34.0
Carub.0004s1710 Capsella rubella HOM05D000157 ORTHO05D004871 5.4e-06 57.0 54 40.7
Ciclev10023831m.g Citrus clementina HOM05D000082 ORTHO05D000038 5.4e-06 57.0 75 34.7
Sp4g17640 Schrenkiella parvula HOM05D000157 ORTHO05D004871 5.4e-06 57.0 55 40.0
RcHm_v2.0_Chr2g0127721 Rosa chinensis HOM05D000082 ORTHO05D000038 7.1e-06 56.6 64 42.2
Cpa.g.sc17.216 Carica papaya HOM05D000082 ORTHO05D000038 9.3e-06 56.2 62 37.1
FvH4_6g51090 Fragaria vesca HOM05D000082 ORTHO05D000038 9.3e-06 56.2 79 32.9
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 9.3e-06 56.2 56 37.5


User provided reference genes

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