Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 4.7e-299 1030.4 513 100.0
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 2.7e-161 572.8 526 55.5
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 2.3e-160 569.7 512 55.9
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 4.7e-158 562.0 514 54.5
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.1e-157 559.3 517 54.4
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 5.8e-156 555.1 553 51.4
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 8.1e-150 534.6 530 52.1
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 2.4e-149 533.1 517 54.0
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 4.9e-147 525.4 534 50.9
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 3.2e-146 522.7 526 51.9
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.0e-144 516.2 511 51.5
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.6e-144 515.0 524 50.2
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 7.3e-143 511.5 526 50.4
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 6.2e-142 508.4 518 49.6
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 8.1e-142 508.1 523 51.6
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 3.1e-141 506.1 514 52.1
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 4.0e-141 505.8 516 50.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 3.4e-140 502.7 531 51.6
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 9.9e-140 501.1 512 50.6
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 2.2e-139 500.0 518 48.8
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.4e-138 497.3 532 50.2
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 5.4e-138 495.4 510 49.8
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 2.3e-136 490.0 515 50.9
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.5e-135 487.3 522 49.2
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 9.6e-135 484.6 526 48.1
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 4.8e-134 482.3 519 49.9
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.4e-133 480.7 522 50.2
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.8e-133 480.3 522 50.2
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.8e-133 480.3 540 49.1
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.1e-133 479.6 522 49.8
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 9.0e-133 478.0 523 48.6
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 3.4e-132 476.1 522 49.8
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 4.5e-132 475.7 522 49.0
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 7.6e-132 474.9 484 50.2
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.2e-131 473.4 554 44.8
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 6.0e-129 465.3 525 48.6
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 9.6e-127 458.0 509 48.5
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.8e-126 456.4 525 47.2
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 2.8e-126 456.4 526 48.1
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 2.8e-126 456.4 531 48.0
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.1e-125 454.5 517 47.6
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 3.1e-125 453.0 521 47.4
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 9.0e-125 451.4 469 51.4
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.5e-124 450.7 522 48.1
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 8.4e-123 444.9 496 46.6
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 8.4e-123 444.9 530 47.5
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.2e-121 441.0 472 50.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 2.5e-119 433.3 522 44.3
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.3e-118 431.0 534 46.3
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.7e-118 429.5 520 46.7
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 6.3e-118 428.7 515 44.9
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.4e-117 426.8 518 44.4
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 2.4e-117 426.8 557 42.9
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 2.6e-116 423.3 525 44.8
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 8.4e-115 418.3 496 48.2
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 1.9e-114 417.2 540 44.1
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 2.5e-114 416.8 516 45.2
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 5.5e-114 415.6 549 42.8
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.7e-113 413.3 540 44.3
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.5e-113 412.9 494 47.4
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 3.5e-113 412.9 510 43.7
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.9e-111 407.1 512 44.5
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 2.2e-110 403.7 515 43.1
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 2.2e-110 403.7 534 42.5
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 5.3e-109 399.1 517 43.5
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 7.7e-108 395.2 511 44.4
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.0e-107 394.8 514 42.4
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 2.2e-107 393.7 485 46.0
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 6.5e-107 392.1 518 42.9
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 2.5e-106 390.2 507 41.2
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 2.5e-106 390.2 518 42.5
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 4.6e-105 386.0 517 41.2
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 7.9e-105 385.2 513 42.9
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 3.9e-104 382.9 512 41.6
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 3.9e-104 382.9 510 42.4
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 8.8e-104 381.7 401 51.1
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 4.3e-103 379.4 355 54.6
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 2.0e-100 370.5 510 41.0
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 5.9e-100 369.0 524 40.8
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 8.5e-99 365.2 475 44.2
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 2.5e-98 363.6 511 41.1
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.4e-93 347.1 466 42.5
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 5.9e-92 342.4 432 44.9
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 3.8e-91 339.7 508 40.0
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 6.5e-91 339.0 368 48.9
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 6.5e-91 339.0 525 38.7
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 1.9e-90 337.4 512 39.8
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.5e-90 337.0 503 39.6
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 2.5e-90 337.0 358 49.2
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 2.7e-84 317.0 504 36.9
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 3.5e-84 316.6 457 40.9
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 1.7e-83 314.3 346 48.8
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.9e-82 310.8 513 35.9
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 4.0e-80 303.1 503 36.2
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 6.8e-80 302.4 342 45.6
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 2.0e-71 274.2 251 54.6
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 1.3e-70 271.6 584 32.5
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 9.5e-66 255.4 311 45.0
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.0e-64 251.9 430 37.9
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 4.0e-64 250.0 221 55.2
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 6.4e-62 242.7 345 40.6
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 7.0e-61 239.2 655 29.6
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.3e-59 235.0 314 40.8
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.0e-59 233.0 258 46.5
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 1.4e-40 171.8 643 25.8
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 2.9e-38 164.1 268 38.4
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 6.4e-38 162.9 117 65.8
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 3.2e-37 160.6 160 55.6
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 1.1e-34 152.1 99 65.7
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 9.6e-34 149.1 96 66.7
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 9.6e-34 149.1 115 59.1
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.4e-32 145.2 91 69.2
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.4e-32 145.2 97 66.0
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.2e-31 142.1 115 60.0
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 9.9e-31 139.0 90 63.3
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 1.4e-29 135.2 85 68.2
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.2e-29 133.7 117 53.8
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 5.4e-29 133.3 92 62.0
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.6e-28 131.7 96 57.3
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.7e-27 128.3 617 25.6
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 1.3e-25 122.1 77 64.9
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 4.8e-25 120.2 82 61.0
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 1.4e-24 118.6 152 42.8
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 5.8e-23 113.2 95 56.8
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 4.9e-22 110.2 95 50.5
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.4e-21 108.6 69 62.3
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 1.9e-21 108.2 90 55.6
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.9e-21 108.2 131 39.7
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 6.7e-19 99.8 90 46.7
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 3.3e-18 97.4 119 48.7
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 8.1e-17 92.8 124 42.7
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 1.1e-16 92.4 86 54.7
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 4.0e-16 90.5 77 51.9
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 5.3e-16 90.1 146 37.7
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.3e-14 85.5 100 47.0
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.7e-14 85.1 95 46.3
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 6.4e-14 83.2 90 53.3
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 3.2e-13 80.9 51 60.8
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.3e-13 79.3 73 47.9
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.6e-12 77.0 78 47.4
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.9e-12 76.3 71 49.3
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.9e-12 76.3 71 49.3
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 5.6e-10 70.1 68 47.1
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.4e-10 69.7 52 53.8
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.1e-09 68.2 205 27.8
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.4e-08 65.5 95 41.1
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.4e-08 65.5 115 32.2
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 4.0e-08 63.9 92 43.5
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.2e-07 62.4 45 60.0


User provided reference genes

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