Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 2.3e-121 439.1 254 100.0
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 1.4e-86 323.6 253 70.0
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 5.0e-84 315.1 252 67.1
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 7.2e-83 311.2 243 73.7
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 1.6e-82 310.1 252 67.1
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 3.0e-81 305.8 252 65.5
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 1.1e-80 303.9 251 70.9
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 2.6e-80 302.8 252 68.3
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 4.4e-80 302.0 213 72.8
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 5.7e-80 301.6 248 64.5
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 9.7e-80 300.8 252 69.0
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 1.7e-79 300.1 250 64.8
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 1.7e-79 300.1 248 65.7
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.7e-79 300.1 251 67.3
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 2.2e-79 299.7 217 71.4
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 2.2e-79 299.7 213 70.0
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 6.3e-79 298.1 217 71.4
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.1e-78 297.4 252 63.1
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 1.8e-78 296.6 252 67.5
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 7.0e-78 294.7 248 64.5
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 1.2e-77 293.9 215 68.8
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 1.6e-77 293.5 250 63.6
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 2.0e-77 293.1 215 70.7
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 2.0e-77 293.1 256 61.7
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 2.0e-77 293.1 250 63.6
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 2.7e-77 292.7 213 69.5
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 4.5e-77 292.0 252 61.9
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 5.9e-77 291.6 250 62.0
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 3.8e-76 288.9 258 63.6
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 8.5e-76 287.7 249 68.3
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 8.5e-76 287.7 212 69.3
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 1.1e-75 287.3 218 68.8
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 1.5e-75 287.0 212 68.9
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 1.5e-75 287.0 252 63.1
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 1.9e-75 286.6 215 68.4
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 9.4e-75 284.3 252 59.5
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 9.4e-75 284.3 212 68.4
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 1.2e-74 283.9 214 67.8
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.6e-74 283.5 213 66.7
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 1.6e-74 283.5 241 62.2
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 2.1e-74 283.1 249 65.5
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 2.1e-74 283.1 252 62.3
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 2.7e-74 282.7 246 66.3
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 2.7e-74 282.7 211 67.8
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 2.7e-74 282.7 211 67.8
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 3.6e-74 282.3 211 69.2
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 4.7e-74 282.0 213 66.7
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 6.1e-74 281.6 211 68.2
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 4.0e-73 278.9 211 67.3
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 8.8e-73 277.7 252 58.3
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 2.6e-72 276.2 216 65.7
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 5.7e-72 275.0 215 66.5
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 5.7e-72 275.0 262 64.1
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 5.7e-72 275.0 222 65.8
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.3e-71 273.9 211 68.2
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 2.2e-71 273.1 216 65.3
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 2.2e-71 273.1 216 65.3
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 3.7e-71 272.3 215 65.1
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 3.7e-71 272.3 235 62.1
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 4.8e-71 271.9 242 60.3
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.8e-70 270.0 244 59.4
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 4.1e-70 268.9 278 53.2
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 9.1e-70 267.7 242 62.0
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 9.1e-70 267.7 216 64.4
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 1.2e-69 267.3 213 68.1
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 1.1e-67 260.8 214 63.6
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 1.9e-67 260.0 209 64.6
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 2.5e-67 259.6 244 63.5
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.2e-67 259.2 211 65.9
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 3.2e-67 259.2 219 66.2
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 4.2e-67 258.8 207 63.3
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 9.4e-67 257.7 215 65.1
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 1.6e-66 256.9 213 63.8
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 2.7e-66 256.1 240 65.8
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 1.4e-65 253.8 213 63.4
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 5.2e-65 251.9 242 64.5
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 4.4e-64 248.8 313 50.2
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 5.7e-64 248.4 226 61.1
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 1.7e-63 246.9 217 62.7
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 1.7e-63 246.9 252 60.3
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 3.7e-63 245.7 215 63.7
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 6.3e-63 245.0 205 62.4
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 1.4e-62 243.8 215 61.4
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 5.4e-62 241.9 211 62.6
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 7.0e-62 241.5 331 49.8
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 9.2e-62 241.1 251 53.0
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 1.6e-61 240.4 213 59.6
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 1.3e-60 237.3 240 55.4
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 5.0e-60 235.3 202 60.4
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 5.0e-60 235.3 208 57.2
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 1.5e-59 233.8 222 56.8
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 8.0e-58 228.0 274 48.9
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 1.8e-57 226.9 213 58.2
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 3.0e-57 226.1 214 57.0
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 6.8e-57 224.9 226 55.8
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 1.5e-56 223.8 224 55.4
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 1.5e-56 223.8 226 55.3
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 3.4e-56 222.6 202 62.4
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 3.4e-56 222.6 226 54.9
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 7.5e-56 221.5 171 66.7
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 2.2e-55 219.9 230 54.3
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 8.3e-55 218.0 211 54.5
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.1e-54 217.6 170 68.8
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 2.4e-54 216.5 284 48.6
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 5.4e-54 215.3 170 67.6
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 7.0e-54 214.9 250 55.2
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 9.2e-54 214.5 291 50.2
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 1.2e-53 214.2 209 54.1
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 1.3e-52 210.7 217 55.3
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 9.5e-51 204.5 203 55.7
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 9.5e-51 204.5 203 53.7
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 3.6e-50 202.6 213 55.4
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 4.7e-50 202.2 201 61.2
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 3.7e-47 192.6 182 58.8
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 6.4e-47 191.8 213 50.7
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 6.4e-47 191.8 168 62.5
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 1.4e-46 190.7 215 52.1
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 3.3e-43 179.5 164 57.9
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 1.0e-36 157.9 130 59.2
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 3.1e-33 146.4 219 42.9
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 4.0e-33 146.0 174 48.3
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 4.9e-31 139.0 206 43.7
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.2e-30 136.3 224 43.3
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 1.5e-27 127.5 115 55.7
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 4.7e-26 122.5 95 65.3
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 3.8e-23 112.8 131 58.0
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 1.6e-21 107.5 81 61.7
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 2.1e-21 107.1 82 67.1
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 4.6e-21 105.9 176 35.8
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 7.8e-21 105.1 83 68.7
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 5.6e-19 99.0 76 69.7
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 7.3e-19 98.6 181 39.2
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 2.4e-17 93.6 213 35.7
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.2e-16 91.3 142 44.4
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.2e-16 91.3 178 41.6
Oeu011662.1 Olea europaea HOM05D004958 ORTHO05D005983 7.6e-16 88.6 110 53.6
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 2.9e-15 86.7 176 34.7
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 1.3e-12 77.8 59 59.3
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 6.7e-12 75.5 49 77.6
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 1.6e-10 70.9 56 57.1
Aqoxy107s001 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 3.6e-10 69.7 74 55.4
C08p47230 Brassica napus HOM05D007482 ORTHO05D003038 5.3e-09 65.9 76 55.3
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 5.3e-09 65.9 56 66.1
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 2.6e-08 63.5 55 65.5
BcaB03g13174 Brassica carinata HOM05D004958 ORTHO05D005983 6.4e-07 58.9 81 50.6
Zm00001eb045710 Zea mays HOM05D004958 ORTHO05D005983 9.3e-06 55.1 37 70.3


User provided reference genes

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