Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_007672 Daucus carota HOM05D000527 ORTHO05D016743 2.4e-56 221.9 107 100.0
DCAR_009098 Daucus carota HOM05D000527 ORTHO05D016743 1.1e-24 116.7 65 86.2
DCAR_020480 Daucus carota HOM05D000527 ORTHO05D000559 1.0e-22 110.2 64 87.5
vmacro09084 Vaccinium macrocarpon HOM05D000527 ORTHO05D000559 1.5e-21 106.3 75 68.0
unitig_8.g3508 Utricularia gibba HOM05D000527 ORTHO05D000559 2.8e-20 102.1 77 64.9
CSS0026938 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 1.1e-19 100.1 81 59.3
Nitab4.5_0002649g0010 Nicotiana tabacum HOM05D000527 ORTHO05D000559 1.1e-19 100.1 69 69.6
Lalb_Chr01g0017461 Lupinus albus HOM05D000527 ORTHO05D000559 4.0e-19 98.2 83 54.2
Nitab4.5_0009705g0010 Nicotiana tabacum HOM05D000527 ORTHO05D000559 5.3e-19 97.8 68 67.6
Psat6g083720 Pisum sativum HOM05D000527 ORTHO05D000559 6.9e-19 97.4 70 62.9
ClCG04G003310 Citrullus lanatus HOM05D000527 ORTHO05D000559 1.5e-18 96.3 71 63.4
HanXRQChr13g0390751 Helianthus annuus HOM05D000527 ORTHO05D000559 1.5e-18 96.3 66 68.2
VMungo1383G0554 Vigna mungo HOM05D000527 ORTHO05D000559 1.5e-18 96.3 80 57.5
ECA248G1680 Erigeron canadensis HOM05D000527 ORTHO05D000559 4.5e-18 94.7 64 70.3
AUR62024430 Chenopodium quinoa HOM05D000527 ORTHO05D000559 5.8e-18 94.4 68 64.7
AUR62026023 Chenopodium quinoa HOM05D000527 ORTHO05D000559 5.8e-18 94.4 68 64.7
Actinidia38554 Actinidia chinensis HOM05D000527 ORTHO05D000559 7.6e-18 94.0 68 66.2
Lj1g0018747 Lotus japonicus HOM05D000527 ORTHO05D000559 7.6e-18 94.0 68 61.8
MELO3C023110.2 Cucumis melo HOM05D000527 ORTHO05D000559 9.9e-18 93.6 68 66.2
Hma1.2p1_0696F.1_g204720 Hydrangea macrophylla HOM05D000527 ORTHO05D000559 9.9e-18 93.6 68 67.6
Dinv39589 Davidia involucrata HOM05D000527 ORTHO05D000559 1.3e-17 93.2 68 67.6
Manes.09G024300 Manihot esculenta HOM05D000527 ORTHO05D000559 1.7e-17 92.8 68 66.2
Actinidia17242 Actinidia chinensis HOM05D000527 ORTHO05D000559 2.2e-17 92.4 68 66.2
CAN.G77.6 Capsicum annuum HOM05D000527 ORTHO05D000559 2.2e-17 92.4 69 68.1
CsaV3_4G011820 Cucumis sativus L. HOM05D000527 ORTHO05D000559 2.2e-17 92.4 68 64.7
MBI01_g26746_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 2.2e-17 92.4 72 62.5
PGR004G0504 Punica granatum HOM05D000527 ORTHO05D000559 2.9e-17 92.0 64 68.8
Lju124C37T7 Lonicera japonica HOM05D000527 ORTHO05D000559 3.8e-17 91.7 68 66.2
Gorai.002G147800 Gossypium raimondii HOM05D000527 ORTHO05D000559 4.9e-17 91.3 68 63.2
Ca_08469_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 6.4e-17 90.9 68 61.8
Sopen03g013100 Solanum pennellii HOM05D000527 ORTHO05D000559 6.4e-17 90.9 68 63.2
Cc06_g16860 Coffea canephora HOM05D000527 ORTHO05D000559 8.4e-17 90.5 68 64.7
Eucgr.A02374 Eucalyptus grandis HOM05D000527 ORTHO05D000559 8.4e-17 90.5 64 67.2
Gohir.D01G121100 Gossypium hirsutum HOM05D000527 ORTHO05D000559 8.4e-17 90.5 68 63.2
Oeu000817.1 Olea europaea HOM05D000527 ORTHO05D000559 8.4e-17 90.5 68 64.7
RcHm_v2.0_Chr3g0481621 Rosa chinensis HOM05D000527 ORTHO05D000559 8.4e-17 90.5 68 64.7
SalBow6G4225 Salvia bowleyana HOM05D000527 ORTHO05D000559 8.4e-17 90.5 64 67.2
DCAR_013594 Daucus carota HOM05D000527 ORTHO05D000559 1.1e-16 90.1 68 63.2
Thecc.05G158600 Theobroma cacao HOM05D000527 ORTHO05D000559 1.1e-16 90.1 68 63.2
GSVIVG01033305001 Vitis vinifera HOM05D000527 ORTHO05D000559 1.1e-16 90.1 71 60.6
Ah.04g151640 Amaranthus hybridus HOM05D000527 ORTHO05D000559 1.4e-16 89.7 68 61.8
CiPaw.09G036600 Carya illinoinensis HOM05D000527 ORTHO05D000559 1.4e-16 89.7 68 64.7
Glyma.03G137900 Glycine max HOM05D000527 ORTHO05D000559 1.4e-16 89.7 68 61.8
Potri.006G052800 Populus trichocarpa HOM05D000527 ORTHO05D000559 1.4e-16 89.7 64 68.8
Rhsim04G0100900 Rhododendron simsii HOM05D000527 ORTHO05D000559 1.4e-16 89.7 68 63.2
Sed0026045 Sechium edule HOM05D000527 ORTHO05D000559 1.4e-16 89.7 68 63.2
Lsat_1_v5_gn_5_162541 Lactuca sativa HOM05D000527 ORTHO05D000559 1.9e-16 89.4 64 68.8
Nn2g15339 Nelumbo nucifera HOM05D000527 ORTHO05D000559 1.9e-16 89.4 68 64.7
MSTRG.19870 Avicennia marina HOM05D000527 ORTHO05D000559 2.4e-16 89.0 64 67.2
COL.COLO4_28216 Corchorus olitorius HOM05D000527 ORTHO05D000559 3.2e-16 88.6 64 67.2
Migut.J01768 Erythranthe guttata HOM05D000527 ORTHO05D000559 3.2e-16 88.6 64 64.1
Sabra06G0037200 Salix brachista HOM05D000527 ORTHO05D000559 3.2e-16 88.6 70 64.3
Hund19156 Selenicereus undatus HOM05D000527 ORTHO05D000559 3.2e-16 88.6 64 68.8
TWI74G0532 Tripterygium wilfordii HOM05D000527 ORTHO05D000559 4.2e-16 88.2 64 68.8
MSTRG.26118 Avicennia marina HOM05D000527 ORTHO05D000559 5.5e-16 87.8 64 64.1
EL10Ac3g07070 Beta vulgaris HOM05D000527 ORTHO05D000559 5.5e-16 87.8 68 60.3
Cpa.g.sc92.35 Carica papaya HOM05D000527 ORTHO05D000559 5.5e-16 87.8 68 63.2
CANSAT80G2363 Cannabis sativa HOM05D000527 ORTHO05D000559 7.1e-16 87.4 64 65.6
CiPaw.10G032300 Carya illinoinensis HOM05D000527 ORTHO05D000559 7.1e-16 87.4 68 64.7
Duzib093G2223 Durio zibethinus HOM05D000527 ORTHO05D000559 7.1e-16 87.4 64 64.1
FAN02G0940 Fragaria x ananassa HOM05D000527 ORTHO05D000559 7.1e-16 87.4 68 61.8
FAN05G4104 Fragaria x ananassa HOM05D000527 ORTHO05D000559 7.1e-16 87.4 68 61.8
TWI53G0822 Tripterygium wilfordii HOM05D000527 ORTHO05D000559 7.1e-16 87.4 64 65.6
FvH4_6g23550 Fragaria vesca HOM05D000527 ORTHO05D000559 9.3e-16 87.0 68 61.8
FAN14G2512 Fragaria x ananassa HOM05D000527 ORTHO05D000559 9.3e-16 87.0 68 61.8
Potri.016G054700 Populus trichocarpa HOM05D000527 ORTHO05D000559 9.3e-16 87.0 64 65.6
Sed0013764 Sechium edule HOM05D000527 ORTHO05D000559 9.3e-16 87.0 68 61.8
HPP92_010210 Vanilla planifolia HOM05D000527 ORTHO05D000559 9.3e-16 87.0 69 60.9
Migut.K00079 Erythranthe guttata HOM05D000527 ORTHO05D000559 1.2e-15 86.7 68 63.2
CANSAT80G1463 Cannabis sativa HOM05D000527 ORTHO05D000559 1.6e-15 86.3 64 64.1
FAN09G1946 Fragaria x ananassa HOM05D000527 ORTHO05D000559 1.6e-15 86.3 68 61.8
Gohir.A01G132000 Gossypium hirsutum HOM05D000527 ORTHO05D000559 1.6e-15 86.3 68 61.8
MD12G1077900 Malus domestica HOM05D000527 ORTHO05D016743 1.6e-15 86.3 68 60.3
Psat3g072120 Pisum sativum HOM05D000527 ORTHO05D000559 1.6e-15 86.3 69 59.4
QL07p020877 Quercus lobata HOM05D000527 ORTHO05D000559 1.6e-15 86.3 64 65.6
Cfa016838 Carpinus fangiana HOM05D000527 ORTHO05D000559 2.1e-15 85.9 68 63.2
Ciclev10004372m.g Citrus clementina HOM05D000527 ORTHO05D000559 2.1e-15 85.9 64 64.1
Haze_19881 Corylus avellana HOM05D000527 ORTHO05D000559 2.1e-15 85.9 68 63.2
Haze_19889 Corylus avellana HOM05D000527 ORTHO05D000559 2.1e-15 85.9 68 63.2
Oeu033147.3 Olea europaea HOM05D000527 ORTHO05D000559 2.1e-15 85.9 68 61.8
SalBow1G7741 Salvia bowleyana HOM05D000527 ORTHO05D000559 2.1e-15 85.9 68 61.8
VMungo0720G2802 Vigna mungo HOM05D000527 ORTHO05D000559 2.1e-15 85.9 64 64.1
CSS0043340 Camellia sinensis var. sinensis HOM05D000527 ORTHO05D000559 2.7e-15 85.5 64 64.1
Medtr7g091880 Medicago truncatula HOM05D000527 ORTHO05D000559 2.7e-15 85.5 68 58.8
SHI26317 Sapria himalayana HOM05D000527 ORTHO05D000559 2.7e-15 85.5 80 55.0
TAR623G0455 Trochodendron aralioides HOM05D000527 ORTHO05D000559 2.7e-15 85.5 64 64.1
Aqoxy2G00191 Aquilegia oxysepala HOM05D000527 ORTHO05D000559 3.5e-15 85.1 68 60.3
Duzib128G1605 Durio zibethinus HOM05D000527 ORTHO05D000559 3.5e-15 85.1 68 58.8
TPR.G29480 Trifolium pratense HOM05D000527 ORTHO05D000559 3.5e-15 85.1 69 58.0
Oeu064309.1 Olea europaea HOM05D000527 ORTHO05D000559 4.6e-15 84.7 64 65.6
PSO541G4785 Papaver somniferum HOM05D000527 ORTHO05D000559 6.0e-15 84.3 68 60.3
TPR.G36002 Trifolium pratense HOM05D000527 ORTHO05D016743 6.0e-15 84.3 65 60.0
THA.LOC104802186 Tarenaya hassleriana HOM05D000527 ORTHO05D000559 7.9e-15 84.0 68 61.8
MD14G1070200 Malus domestica HOM05D000527 ORTHO05D000559 1.0e-14 83.6 64 59.4
Medtr1g052515 Medicago truncatula HOM05D000527 ORTHO05D000559 1.0e-14 83.6 64 57.8
HPP92_010188 Vanilla planifolia HOM05D000527 ORTHO05D000559 1.8e-14 82.8 68 58.8
Oeu032994.1 Olea europaea HOM05D000527 ORTHO05D000559 2.3e-14 82.4 68 60.3
SEGI_00341 Sequoiadendron giganteum HOM05D000527 ORTHO05D000559 2.3e-14 82.4 68 61.8
SEGI_23329 Sequoiadendron giganteum HOM05D000527 ORTHO05D000559 2.3e-14 82.4 68 61.8
TPR.G27780 Trifolium pratense HOM05D000527 ORTHO05D016743 2.3e-14 82.4 68 52.9
MSTRG.6436 Avicennia marina HOM05D000527 ORTHO05D000559 3.0e-14 82.0 64 60.9
Ca_23906_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 3.0e-14 82.0 64 57.8
Phvul.001G135200 Phaseolus vulgaris HOM05D000527 ORTHO05D000559 3.9e-14 81.6 64 60.9
Prupe.7G064000 Prunus persica HOM05D000527 ORTHO05D000559 3.9e-14 81.6 68 57.4
Sc13g0001840 Simmondsia chinensis HOM05D000527 ORTHO05D000559 3.9e-14 81.6 64 59.4
TAR633G2351 Trochodendron aralioides HOM05D000527 ORTHO05D000559 2.5e-13 79.0 68 58.8
SGA_v2.0_scaffold94G28466 Striga asiatica HOM05D000527 ORTHO05D000559 3.3e-13 78.6 72 56.9
Manes.08G049600 Manihot esculenta HOM05D000527 ORTHO05D000559 5.6e-13 77.8 68 61.8
Sp5g05070 Schrenkiella parvula HOM05D000527 ORTHO05D000559 1.3e-12 76.6 68 55.9
Thhalv10005800m.g Eutrema salsugineum HOM05D000527 ORTHO05D000559 2.8e-12 75.5 68 55.9
TPR.G29624 Trifolium pratense HOM05D000527 ORTHO05D016743 3.7e-12 75.1 55 61.8
Aa31LG10G12350 Aethionema arabicum HOM05D000527 ORTHO05D000559 6.2e-12 74.3 68 54.4
THA.LOC104824451 Tarenaya hassleriana HOM05D000527 ORTHO05D000559 6.2e-12 74.3 65 58.5
AL5G39100 Arabidopsis lyrata HOM05D000527 ORTHO05D000559 1.1e-11 73.6 68 55.9
ATR0332G116 Amborella trichopoda HOM05D000527 ORTHO05D000559 1.8e-11 72.8 68 54.4
Carub.0005s2436 Capsella rubella HOM05D000527 ORTHO05D000559 1.8e-11 72.8 68 54.4
A09p50380 Brassica napus HOM05D000527 ORTHO05D000559 2.4e-11 72.4 80 51.2
AT3G57520 Arabidopsis thaliana HOM05D000527 ORTHO05D000559 3.1e-11 72.0 68 52.9
C08p33050 Brassica napus HOM05D000527 ORTHO05D000559 3.1e-11 72.0 68 54.4
BolC8t50905H Brassica oleracea HOM05D000527 ORTHO05D000559 3.1e-11 72.0 68 54.4
BraA09t40490Z Brassica rapa HOM05D000527 ORTHO05D000559 3.1e-11 72.0 68 54.4
arahy.Tifrunner.gnm1.ann1.82P426 Arachis hypogaea HOM05D000527 ORTHO05D000559 5.3e-11 71.2 68 50.0
CARHR167740 Cardamine hirsuta HOM05D000527 ORTHO05D000559 5.3e-11 71.2 68 51.5
BcaC07g40373 Brassica carinata HOM05D000527 ORTHO05D000559 2.0e-10 69.3 70 52.9
arahy.Tifrunner.gnm1.ann1.3HRB74 Arachis hypogaea HOM05D000527 ORTHO05D000559 7.6e-10 67.4 64 48.4
Zm00001eb061880 Zea mays HOM05D000527 ORTHO05D000559 1.3e-09 66.6 63 52.4
Os03g0808900 Oryza sativa ssp. japonica HOM05D000527 ORTHO05D000559 2.2e-09 65.9 63 52.4
SEGI_03115 Sequoiadendron giganteum HOM05D000527 ORTHO05D000559 2.9e-09 65.5 68 47.1
BcaB04g16931 Brassica carinata HOM05D000527 ORTHO05D000559 2.7e-07 58.9 64 48.4
Os07g0209100 Oryza sativa ssp. japonica HOM05D000527 ORTHO05D000559 4.6e-07 58.2 63 46.0
A02p06130 Brassica napus HOM05D000527 ORTHO05D000559 7.9e-07 57.4 76 38.2
A08p00350 Brassica napus HOM05D000527 ORTHO05D000559 7.9e-07 57.4 64 46.9
BraA08t32093Z Brassica rapa HOM05D000527 ORTHO05D000559 7.9e-07 57.4 64 46.9
BcaC01g01553 Brassica carinata HOM05D000527 ORTHO05D000559 1.8e-06 56.2 64 46.9
BolC3t21609H Brassica oleracea HOM05D000527 ORTHO05D000559 1.8e-06 56.2 64 46.9
Carub.0006s1864 Capsella rubella HOM05D000527 ORTHO05D000559 1.8e-06 56.2 68 38.2
Cc04_g11100 Coffea canephora HOM05D000527 ORTHO05D000559 3.0e-06 55.5 62 45.2
TPR.G1303 Trifolium pratense HOM05D000527 ORTHO05D000559 3.0e-06 55.5 68 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2812 Anthoceros agrestis HOM05D000527 ORTHO05D000559 3.9e-06 55.1 71 38.0
BraA02t05563Z Brassica rapa HOM05D000527 ORTHO05D000559 3.9e-06 55.1 69 39.1
SMO364G0113 Selaginella moellendorffii HOM05D000527 ORTHO05D000559 3.9e-06 55.1 62 43.5
ATR0751G114 Amborella trichopoda HOM05D000527 ORTHO05D000559 5.1e-06 54.7 68 44.1
BcaB05g22856 Brassica carinata HOM05D000527 ORTHO05D000559 5.1e-06 54.7 69 37.7
BcaC03g13746 Brassica carinata HOM05D000527 ORTHO05D000559 5.1e-06 54.7 69 39.1
BNapus_Darmor_BZH_scaffold_38p01710 Brassica napus HOM05D000527 ORTHO05D000559 5.1e-06 54.7 68 39.7
BolC2t07030H Brassica oleracea HOM05D000527 ORTHO05D000559 5.1e-06 54.7 69 39.1
TAR627G0258 Trochodendron aralioides HOM05D000527 ORTHO05D000559 5.1e-06 54.7 68 45.6
AL1G63800 Arabidopsis lyrata HOM05D000527 ORTHO05D000559 6.7e-06 54.3 64 45.3
AT5G20250 Arabidopsis thaliana HOM05D000527 ORTHO05D000559 8.7e-06 53.9 68 36.8
Sp6g24160 Schrenkiella parvula HOM05D000527 ORTHO05D000559 8.7e-06 53.9 68 38.2


User provided reference genes

Program Settings