Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006991 Daucus carota HOM05D001251 ORTHO05D004135 0.0e+00 1303.5 672 100.0
Haze_15754 Corylus avellana HOM05D001251 ORTHO05D004135 2.6e-140 503.4 704 46.7
Cfa003724 Carpinus fangiana HOM05D001251 ORTHO05D004135 1.3e-136 491.1 696 45.8
Duzib138G1188 Durio zibethinus HOM05D001251 ORTHO05D004135 1.3e-136 491.1 706 46.2
QL08p047700 Quercus lobata HOM05D001251 ORTHO05D004135 5.6e-135 485.7 710 45.5
Nitab4.5_0005359g0030 Nicotiana tabacum HOM05D001251 ORTHO05D004135 6.9e-133 478.8 701 44.1
TAR374G0209 Trochodendron aralioides HOM05D001251 ORTHO05D004135 1.1e-130 471.5 718 45.8
Thecc.01G332000 Theobroma cacao HOM05D001251 ORTHO05D004135 1.9e-130 470.7 685 45.4
Prupe.2G200400 Prunus persica HOM05D001251 ORTHO05D004135 7.1e-130 468.8 705 44.1
Ciclev10018964m.g Citrus clementina HOM05D001251 ORTHO05D004135 8.2e-126 455.3 703 42.7
Peaxi162Scf00092g01519 Petunia axillaris HOM05D001251 ORTHO05D004135 4.1e-125 453.0 726 42.6
Gorai.008G132000 Gossypium raimondii HOM05D001251 ORTHO05D004135 3.4e-124 449.9 705 44.1
Manes.01G239000 Manihot esculenta HOM05D001251 ORTHO05D004135 3.4e-124 449.9 702 44.3
Gohir.D12G121100 Gossypium hirsutum HOM05D001251 ORTHO05D004135 4.5e-124 449.5 706 43.9
Potri.014G106800 Populus trichocarpa HOM05D001251 ORTHO05D004135 5.5e-122 442.6 712 44.1
CAN.G1150.2 Capsicum annuum HOM05D001251 ORTHO05D004135 1.2e-121 441.4 699 43.3
Hma1.2p1_0074F.1_g038840 Hydrangea macrophylla HOM05D001251 ORTHO05D004135 1.2e-121 441.4 698 44.4
Sopen10g001100 Solanum pennellii HOM05D001251 ORTHO05D004135 1.2e-121 441.4 697 43.2
Solyc10g005080.3 Solanum lycopersicum HOM05D001251 ORTHO05D004135 1.6e-121 441.0 696 43.1
Gohir.A12G117500 Gossypium hirsutum HOM05D001251 ORTHO05D004135 4.6e-121 439.5 706 43.5
Dinv34262 Davidia involucrata HOM05D001251 ORTHO05D004135 1.3e-120 438.0 555 49.0
Duzib133G0065 Durio zibethinus HOM05D001251 ORTHO05D004135 3.0e-120 436.8 704 42.8
Sabra14G0079000 Salix brachista HOM05D001251 ORTHO05D004135 1.5e-119 434.5 701 43.8
Actinidia01529 Actinidia chinensis HOM05D001251 ORTHO05D004135 1.9e-119 434.1 682 44.6
vmacro12634 Vaccinium macrocarpon HOM05D001251 ORTHO05D004135 7.4e-119 432.2 705 42.4
CiPaw.02G045300 Carya illinoinensis HOM05D001251 ORTHO05D004135 9.7e-119 431.8 728 43.1
RcHm_v2.0_Chr1g0361301 Rosa chinensis HOM05D001251 ORTHO05D004135 4.8e-118 429.5 722 43.8
TWI14G1269 Tripterygium wilfordii HOM05D001251 ORTHO05D004135 6.3e-118 429.1 718 41.5
Potri.002G180800 Populus trichocarpa HOM05D001251 ORTHO05D004135 8.2e-118 428.7 713 42.4
Gorai.008G131800 Gossypium raimondii HOM05D001251 ORTHO05D004135 5.3e-117 426.0 706 42.5
CSS0039199 Camellia sinensis var. sinensis HOM05D001251 ORTHO05D004135 6.9e-117 425.6 699 43.1
Glyma.16G017400 Glycine max HOM05D001251 ORTHO05D004135 2.2e-115 420.6 703 42.4
FvH4_7g17850 Fragaria vesca HOM05D001251 ORTHO05D004135 2.9e-115 420.2 724 43.0
Hma1.2p1_2492F.1_g323260 Hydrangea macrophylla HOM05D001251 ORTHO05D004135 2.9e-115 420.2 704 43.2
MD01G1090900 Malus domestica HOM05D001251 ORTHO05D004135 3.8e-115 419.9 730 41.5
Glyma.07G048500 Glycine max HOM05D001251 ORTHO05D004135 5.0e-115 419.5 702 42.5
Gohir.A11G101800 Gossypium hirsutum HOM05D001251 ORTHO05D004135 5.0e-115 419.5 708 41.8
FAN06G1969 Fragaria x ananassa HOM05D001251 ORTHO05D004135 6.5e-115 419.1 725 42.9
Migut.N01518 Erythranthe guttata HOM05D001251 ORTHO05D004135 1.4e-114 417.9 708 42.8
FAN01G0834 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.4e-114 417.9 722 42.7
VMungo0331G1277 Vigna mungo HOM05D001251 ORTHO05D004135 1.9e-114 417.5 711 42.6
Manes.05G015600 Manihot esculenta HOM05D001251 ORTHO05D004135 4.2e-114 416.4 705 42.7
FAN03G0514 Fragaria x ananassa HOM05D001251 ORTHO05D004135 7.2e-114 415.6 727 42.5
FAN06G3608 Fragaria x ananassa HOM05D001251 ORTHO05D004135 3.6e-113 413.3 731 42.3
MSTRG.4794 Avicennia marina HOM05D001251 ORTHO05D004135 6.1e-113 412.5 717 41.0
Lj9C609G5 Lonicera japonica HOM05D001251 ORTHO05D004135 1.4e-112 411.4 706 42.8
Nn1g00457 Nelumbo nucifera HOM05D001251 ORTHO05D004135 1.4e-112 411.4 711 42.6
Glyma.03G261800 Glycine max HOM05D001251 ORTHO05D004135 3.0e-112 410.2 701 41.8
Phvul.010G120401 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 6.7e-112 409.1 703 42.5
SalBow5G5002 Salvia bowleyana HOM05D001251 ORTHO05D004135 1.5e-111 407.9 712 40.9
TPR.G4678 Trifolium pratense HOM05D001251 ORTHO05D004135 2.6e-111 407.1 699 40.8
Medtr7g118330 Medicago truncatula HOM05D001251 ORTHO05D004135 4.4e-111 406.4 711 40.8
Gorai.007G113900 Gossypium raimondii HOM05D001251 ORTHO05D004135 1.3e-110 404.8 707 41.3
TAR629G3201 Trochodendron aralioides HOM05D001251 ORTHO05D004135 2.2e-110 404.1 699 40.5
Ca_09556_v3 Cicer arietinum L. HOM05D001251 ORTHO05D004135 8.2e-110 402.1 704 41.3
Gohir.D11G106400 Gossypium hirsutum HOM05D001251 ORTHO05D004135 8.2e-110 402.1 707 41.2
TWI23G1207 Tripterygium wilfordii HOM05D001251 ORTHO05D004135 8.2e-110 402.1 713 41.0
FAN10G4260 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.4e-109 401.4 727 42.0
FAN10G0258 Fragaria x ananassa HOM05D001251 ORTHO05D004135 3.1e-109 400.2 719 42.1
COL.COLO4_23060 Corchorus olitorius HOM05D001251 ORTHO05D004135 4.1e-109 399.8 698 40.4
Glyma.19G260900 Glycine max HOM05D001251 ORTHO05D004135 3.4e-108 396.7 707 41.6
Oeu064410.3 Olea europaea HOM05D001251 ORTHO05D004135 3.4e-108 396.7 704 40.6
CiPaw.01G085700 Carya illinoinensis HOM05D001251 ORTHO05D004135 1.0e-107 395.2 711 40.8
Sabra02G0133600 Salix brachista HOM05D001251 ORTHO05D004135 1.1e-106 391.7 718 40.7
arahy.Tifrunner.gnm1.ann1.0U0SSW Arachis hypogaea HOM05D001251 ORTHO05D004135 9.4e-106 388.7 726 40.8
Cc02_g39990 Coffea canephora HOM05D001251 ORTHO05D004135 1.4e-104 384.8 706 40.4
VMungo1309G2431 Vigna mungo HOM05D001251 ORTHO05D004135 3.9e-104 383.3 673 42.3
Psat3g000720 Pisum sativum HOM05D001251 ORTHO05D004135 1.5e-103 381.3 700 39.7
Atru.chr5.788 Acer truncatum HOM05D001251 ORTHO05D004135 4.4e-103 379.8 571 44.7
Nitab4.5_0007792g0010 Nicotiana tabacum HOM05D001251 ORTHO05D004135 7.4e-103 379.0 699 38.8
AUR62004570 Chenopodium quinoa HOM05D001251 ORTHO05D004135 6.3e-102 375.9 713 40.8
Gohir.D12G121000 Gossypium hirsutum HOM05D001251 ORTHO05D004135 8.2e-102 375.6 706 39.2
Gohir.A12G117400 Gossypium hirsutum HOM05D001251 ORTHO05D004135 1.1e-101 375.2 706 39.1
Phvul.009G259650 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 1.1e-101 375.2 692 41.2
arahy.Tifrunner.gnm1.ann1.P5534Y Arachis hypogaea HOM05D001251 ORTHO05D004135 1.6e-100 371.3 714 38.9
arahy.Tifrunner.gnm1.ann1.GF54Z4 Arachis hypogaea HOM05D001251 ORTHO05D004135 2.0e-100 370.9 708 38.7
MBI12_g27877_MAGBIO Magnolia biondii HOM05D001251 ORTHO05D004135 4.5e-100 369.8 710 40.3
Phvul.009G259400 Phaseolus vulgaris HOM05D001251 ORTHO05D004135 1.7e-99 367.9 709 39.8
arahy.Tifrunner.gnm1.ann1.J7VJ5I Arachis hypogaea HOM05D001251 ORTHO05D004135 2.9e-99 367.1 726 39.8
Lalb_Chr10g0100921 Lupinus albus HOM05D001251 ORTHO05D004135 1.5e-98 364.8 711 40.2
Lj3g0020484 Lotus japonicus HOM05D001251 ORTHO05D004135 1.9e-98 364.4 710 40.4
Sc26g0000440 Simmondsia chinensis HOM05D001251 ORTHO05D004135 4.2e-98 363.2 705 39.6
MELO3C022302.2 Cucumis melo HOM05D001251 ORTHO05D004135 2.7e-97 360.5 712 39.3
ECA240G1436 Erigeron canadensis HOM05D001251 ORTHO05D004135 3.6e-97 360.1 698 39.1
ClCG06G002330 Citrullus lanatus HOM05D001251 ORTHO05D004135 8.0e-97 359.0 717 38.2
Eucgr.D02651 Eucalyptus grandis HOM05D001251 ORTHO05D004135 1.0e-96 358.6 712 38.1
AUR62022683 Chenopodium quinoa HOM05D001251 ORTHO05D004135 6.7e-96 355.9 705 39.6
FAN01G1785 Fragaria x ananassa HOM05D001251 ORTHO05D004135 4.4e-95 353.2 720 40.3
Lalb_Chr18g0044761 Lupinus albus HOM05D001251 ORTHO05D004135 4.4e-95 353.2 722 38.1
PGR031G0915 Punica granatum HOM05D001251 ORTHO05D004135 4.8e-94 349.7 697 38.7
Sed0026128 Sechium edule HOM05D001251 ORTHO05D004135 4.8e-94 349.7 705 38.3
CsaV3_6G008360 Cucumis sativus L. HOM05D001251 ORTHO05D004135 8.2e-94 349.0 702 37.9
MBI04_g18999_MAGBIO Magnolia biondii HOM05D001251 ORTHO05D004135 1.6e-92 344.7 728 39.0
EL10Ac1g00171 Beta vulgaris HOM05D001251 ORTHO05D004135 5.9e-92 342.8 713 39.0
Actinidia28507 Actinidia chinensis HOM05D001251 ORTHO05D004135 6.5e-91 339.3 513 43.1
Cpa.g.sc57.78 Carica papaya HOM05D001251 ORTHO05D004135 7.2e-90 335.9 533 43.2
Lalb_Chr15g0076591 Lupinus albus HOM05D001251 ORTHO05D004135 5.2e-88 329.7 718 37.2
Sed0027265 Sechium edule HOM05D001251 ORTHO05D004135 8.3e-86 322.4 709 37.2
Hund16759 Selenicereus undatus HOM05D001251 ORTHO05D004135 6.5e-83 312.8 688 37.1
PSO782G0772 Papaver somniferum HOM05D001251 ORTHO05D004135 1.1e-82 312.0 755 35.4
Ah.05g178860 Amaranthus hybridus HOM05D001251 ORTHO05D004135 3.3e-82 310.5 709 36.5
PSO063G2933 Papaver somniferum HOM05D001251 ORTHO05D004135 2.8e-81 307.4 759 35.7
Dinv32652 Davidia involucrata HOM05D001251 ORTHO05D004135 1.0e-80 305.4 441 47.8
unitig_45.g31541 Utricularia gibba HOM05D001251 ORTHO05D004135 6.3e-78 296.2 716 35.1
Aa31LG1G10420 Aethionema arabicum HOM05D001251 ORTHO05D004135 1.5e-74 285.0 687 36.5
Aqoxy7G00001_Aqoxy7G00002 Aquilegia oxysepala HOM05D001251 ORTHO05D004135 5.6e-74 283.1 676 34.6
Oeu034954.1 Olea europaea HOM05D001251 ORTHO05D004135 1.2e-73 282.0 526 39.4
SGA_v2.0_scaffold232G43523 Striga asiatica HOM05D001251 ORTHO05D004135 3.0e-72 277.3 710 36.6
THA.LOC104825910 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 2.0e-71 274.6 693 34.1
unitig_8.g3406 Utricularia gibba HOM05D001251 ORTHO05D004135 7.5e-71 272.7 690 35.4
THA.LOC104803067 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 1.8e-69 268.1 701 35.2
ATR0661G164 Amborella trichopoda HOM05D001251 ORTHO05D004135 1.6e-68 265.0 729 32.9
HanXRQChr09g0264411 Helianthus annuus HOM05D001251 ORTHO05D004135 3.0e-67 260.8 692 36.4
Hund27142 Selenicereus undatus HOM05D001251 ORTHO05D004135 2.5e-66 257.7 604 35.9
unitig_22.g6823 Utricularia gibba HOM05D001251 ORTHO05D004135 1.1e-61 242.3 698 35.5
HanXRQChr09g0264401 Helianthus annuus HOM05D001251 ORTHO05D004135 3.2e-61 240.7 707 34.5
AT1G01060 Arabidopsis thaliana HOM05D001251 ORTHO05D004135 4.6e-60 236.9 678 33.9
Thhalv10007028m.g Eutrema salsugineum HOM05D001251 ORTHO05D004135 7.8e-60 236.1 671 33.7
Carub.0001s0116 Capsella rubella HOM05D001251 ORTHO05D004135 3.9e-59 233.8 677 33.2
HanXRQChr15g0489581 Helianthus annuus HOM05D001251 ORTHO05D004135 6.6e-59 233.0 680 33.4
unitig_8.g4997 Utricularia gibba HOM05D001251 ORTHO05D004135 8.6e-59 232.6 702 34.2
unitig_578.g16510 Utricularia gibba HOM05D001251 ORTHO05D004135 1.1e-58 232.3 619 32.8
THA.LOC104815900 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 1.5e-58 231.9 708 31.5
THA.LOC104827645 Tarenaya hassleriana HOM05D001251 ORTHO05D004135 2.8e-57 227.6 695 34.2
Os08g0157600 Oryza sativa ssp. japonica HOM05D001251 ORTHO05D004135 6.2e-57 226.5 699 31.5
Sp1g01250 Schrenkiella parvula HOM05D001251 ORTHO05D004135 8.1e-57 226.1 682 33.0
CARHR001420 Cardamine hirsuta HOM05D001251 ORTHO05D004135 4.4e-55 220.3 676 33.3
CDE04G0747 Ceratophyllum demersum HOM05D001251 ORTHO05D004135 8.3e-54 216.1 665 31.3
Zm00001eb172450 Zea mays HOM05D001251 ORTHO05D004135 1.4e-53 215.3 671 32.6
AL1G11460 Arabidopsis lyrata HOM05D001251 ORTHO05D004135 9.2e-53 212.6 678 33.8
Carub.0004s2954 Capsella rubella HOM05D001251 ORTHO05D004135 1.6e-52 211.8 676 32.0
BcaB03g13553 Brassica carinata HOM05D001071 ORTHO05D004135 8.6e-51 206.1 682 32.1
Sp4g28860 Schrenkiella parvula HOM05D001251 ORTHO05D004135 1.1e-50 205.7 671 31.3
Aa31LG1G28200 Aethionema arabicum HOM05D001251 ORTHO05D004135 5.2e-48 196.8 674 31.3
CARHR142180 Cardamine hirsuta HOM05D001251 ORTHO05D004135 2.9e-46 191.0 690 30.3
BraA10t42363Z Brassica rapa HOM05D001251 ORTHO05D004135 6.4e-46 189.9 676 32.1
C05p00880 Brassica napus HOM05D001251 ORTHO05D004135 3.2e-45 187.6 680 31.8
BolC5t28872H Brassica oleracea HOM05D001251 ORTHO05D004135 5.1e-43 180.3 680 31.2
A10p00850 Brassica napus HOM05D001251 ORTHO05D004135 8.7e-43 179.5 678 31.3
Lsat_1_v5_gn_3_140720 Lactuca sativa HOM05D001251 ORTHO05D004135 3.6e-41 174.1 769 28.9
AL4G46300 Arabidopsis lyrata HOM05D001251 ORTHO05D004135 2.4e-40 171.4 681 29.4
TAR375G0588 Trochodendron aralioides HOM05D000031 ORTHO05D009544 3.4e-39 167.5 301 39.9
BraA08t35670Z Brassica rapa HOM05D001251 ORTHO05D004135 2.4e-37 161.4 672 31.4
BcaB01g06139 Brassica carinata HOM05D001251 ORTHO05D004135 5.4e-37 160.2 674 30.6
BolC3t12576H Brassica oleracea HOM05D001251 ORTHO05D004135 5.4e-37 160.2 674 30.6
C03p00110 Brassica napus HOM05D001251 ORTHO05D004135 1.6e-36 158.7 671 31.3
SGA_v2.0_scaffold43G16339 Striga asiatica HOM05D000071 ORTHO05D000029 1.7e-35 155.2 371 34.0
AT2G46830 Arabidopsis thaliana HOM05D001251 ORTHO05D004135 5.1e-35 153.7 679 28.7
HPP92_002735 Vanilla planifolia HOM05D001251 ORTHO05D004135 8.7e-35 152.9 680 28.4
A08p37730 Brassica napus HOM05D001251 ORTHO05D004135 7.3e-34 149.8 645 31.0
C04p01110 Brassica napus HOM05D001071 ORTHO05D004135 4.8e-33 147.1 673 29.0
BolC4t21764H Brassica oleracea HOM05D001071 ORTHO05D004135 3.1e-32 144.4 671 28.3
BolC7t40758H Brassica oleracea HOM05D001251 ORTHO05D004135 2.0e-31 141.7 666 27.9
A05p00970 Brassica napus HOM05D001071 ORTHO05D004135 8.4e-30 136.3 678 28.2
BraA05t19097Z Brassica rapa HOM05D001071 ORTHO05D004135 1.1e-29 136.0 678 28.3
Dinv32651 Davidia involucrata HOM05D001251 ORTHO05D004135 2.3e-27 128.3 160 46.9
Zm00001eb415760 Zea mays HOM05D001251 ORTHO05D004135 1.5e-26 125.6 201 42.3
GSVIVG01027456001 Vitis vinifera HOM05D001251 ORTHO05D004135 2.5e-26 124.8 140 51.4
Aqoxy7G03772 Aquilegia oxysepala HOM05D001251 ORTHO05D004135 3.7e-25 120.9 217 43.3
HanXRQChr15g0489571 Helianthus annuus HOM05D001251 ORTHO05D004135 1.7e-22 112.1 671 26.5
HPP92_020743 Vanilla planifolia HOM05D001251 ORTHO05D004135 1.9e-21 108.6 619 26.5
CDE12G0822 Ceratophyllum demersum HOM05D001251 ORTHO05D004135 3.2e-21 107.8 291 35.7
Prupe.2G200300 Prunus persica HOM05D001251 ORTHO05D004135 3.2e-21 107.8 558 26.3
Psat0s580g0080 Pisum sativum HOM05D001251 ORTHO05D004135 2.7e-20 104.8 205 40.5
HPP92_020838 Vanilla planifolia HOM05D001251 ORTHO05D004135 1.3e-19 102.4 360 30.6
BcaC06g36496 Brassica carinata HOM05D001251 ORTHO05D004135 3.0e-19 101.3 196 39.8
C07p03620 Brassica napus HOM05D001251 ORTHO05D004135 1.1e-18 99.4 660 25.3
BcaC06g36494 Brassica carinata HOM05D001251 ORTHO05D004135 1.9e-18 98.6 405 28.9
BcaC07g37015 Brassica carinata HOM05D001251 ORTHO05D004135 3.3e-18 97.8 337 30.6
SEGI_18839 Sequoiadendron giganteum HOM05D001251 ORTHO05D004135 1.3e-17 95.9 911 23.7
VMungo1383G3693 Vigna mungo HOM05D001251 ORTHO05D004135 9.0e-16 89.7 137 44.5
Oeu032681.1 Olea europaea HOM05D001251 ORTHO05D004135 2.6e-15 88.2 186 36.0
C08p00060 Brassica napus HOM05D001251 ORTHO05D004135 4.2e-13 80.9 171 36.8
FAN02G3085 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.2e-12 79.3 103 49.5
FAN03G1652 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.2e-12 79.3 103 49.5
FAN17G2333 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.2e-12 79.3 103 49.5
BcaC02g12626 Brassica carinata HOM05D001251 ORTHO05D004135 2.3e-11 75.1 518 24.7
Atru.chr5.787 Acer truncatum HOM05D001251 ORTHO05D000619 3.0e-11 74.7 58 62.1
FAN24G2965 Fragaria x ananassa HOM05D001251 ORTHO05D004135 3.9e-11 74.3 103 47.6
TAR375G0744 Trochodendron aralioides HOM05D001251 ORTHO05D004135 5.1e-11 73.9 145 37.2
BcaC02g12627 Brassica carinata HOM05D001071 ORTHO05D000932 3.3e-10 71.2 126 42.9
Oeu053268.1 Olea europaea HOM05D001251 ORTHO05D004135 5.7e-10 70.5 73 57.5
FAN15G2528 Fragaria x ananassa HOM05D001251 ORTHO05D004135 1.6e-09 68.9 84 48.8
BcaC06g36495 Brassica carinata HOM05D001251 ORTHO05D004135 1.8e-08 65.5 364 25.3
C07p03630 Brassica napus HOM05D001251 ORTHO05D004135 2.2e-06 58.5 322 26.1


User provided reference genes

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