Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 0.0e+00 1436.4 729 100.0
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.2e-242 843.6 709 63.0
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.2e-242 843.6 701 63.2
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 3.9e-238 828.6 696 62.4
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 3.3e-237 825.5 688 63.1
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 6.1e-236 821.2 687 63.0
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 3.1e-235 818.9 690 63.3
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 2.0e-234 816.2 694 62.0
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 2.6e-234 815.8 735 60.5
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 2.9e-233 812.4 691 62.1
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.7e-233 812.0 672 64.0
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 4.9e-233 811.6 704 59.7
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 9.5e-229 797.3 695 60.4
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 6.8e-227 791.2 699 60.7
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 7.5e-226 787.7 697 61.1
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 7.5e-226 787.7 688 61.3
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 9.8e-226 787.3 692 60.4
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.7e-225 785.4 702 59.4
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 1.1e-224 783.9 698 59.3
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 1.4e-224 783.5 702 59.8
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 9.2e-224 780.8 713 58.2
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 1.2e-223 780.4 705 59.9
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.5e-223 778.9 702 59.5
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 1.0e-222 777.3 693 60.6
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 4.7e-220 768.5 691 59.5
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 3.1e-219 765.8 687 59.5
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 5.2e-219 765.0 682 59.7
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.2e-218 763.8 686 58.9
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 1.2e-218 763.8 685 59.3
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 2.0e-218 763.1 689 59.4
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 2.0e-218 763.1 691 59.8
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 9.9e-218 760.8 688 59.2
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.7e-217 760.0 718 55.6
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 6.4e-217 758.1 683 59.4
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 6.4e-217 758.1 675 59.9
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 1.1e-216 757.3 687 58.4
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 2.1e-215 753.1 700 58.7
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 2.1e-215 753.1 684 59.8
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 3.5e-215 752.3 737 57.1
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.6e-215 751.9 700 58.6
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 3.9e-214 748.8 710 57.0
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 8.6e-214 747.7 683 59.3
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 8.6e-214 747.7 684 59.5
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 1.5e-213 746.9 673 60.2
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 4.3e-213 745.3 680 59.6
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 5.6e-213 745.0 699 57.7
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 7.3e-213 744.6 700 59.0
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 2.8e-212 742.7 690 58.1
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 3.6e-212 742.3 695 57.8
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 8.1e-212 741.1 689 58.1
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 6.8e-211 738.0 728 54.1
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 6.8e-211 738.0 699 57.2
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 6.8e-211 738.0 681 58.7
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 3.4e-210 735.7 703 57.0
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 5.8e-210 734.9 688 57.4
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 5.8e-210 734.9 770 53.4
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 2.2e-209 733.0 703 56.6
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 1.1e-208 730.7 708 55.9
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.9e-208 729.9 769 53.3
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 3.5e-207 725.7 699 56.5
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 4.6e-207 725.3 654 59.9
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 1.9e-205 719.9 681 57.7
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 2.5e-205 719.5 703 56.9
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 4.0e-203 712.2 629 60.4
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 6.9e-203 711.4 724 55.9
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 4.2e-200 702.2 694 55.2
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 5.4e-200 701.8 701 55.8
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.5e-197 693.7 702 54.4
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.5e-194 683.7 692 55.8
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 8.4e-193 677.9 565 62.7
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 1.9e-192 676.8 628 56.7
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 4.6e-191 672.2 661 55.7
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.8e-190 670.2 530 66.2
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 1.4e-187 660.6 675 53.0
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 1.8e-187 660.2 710 53.1
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 9.0e-187 657.9 703 54.1
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 2.7e-183 646.4 583 60.2
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.7e-180 636.0 671 52.9
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 1.3e-177 627.5 491 67.4
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 1.3e-177 627.5 565 58.6
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 3.9e-174 615.9 495 65.3
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 2.0e-165 587.0 443 68.2
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 3.7e-164 582.8 680 49.4
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.4e-163 580.9 523 59.7
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 6.5e-153 545.4 568 53.7
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.9e-144 517.3 716 41.9
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 2.3e-142 510.4 759 40.4
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 3.0e-142 510.0 385 67.8
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 4.5e-138 496.1 475 56.0
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 4.4e-133 479.6 706 40.8
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 2.7e-130 470.3 752 41.9
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 3.6e-127 459.9 316 71.5
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 1.2e-125 454.9 312 71.8
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 2.6e-117 427.2 484 50.2
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 2.0e-114 417.5 405 54.1
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 6.6e-113 412.5 315 66.0
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 5.6e-112 409.5 312 66.3
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.6e-112 409.5 361 59.6
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.8e-110 404.4 315 65.1
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 4.3e-104 383.3 682 37.1
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 1.3e-100 371.7 795 32.5
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 9.2e-99 365.5 757 34.9
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.7e-97 361.3 323 57.3
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 5.4e-91 339.7 317 55.8
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 6.6e-89 332.8 311 56.6
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.1e-86 323.9 346 49.4
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 2.3e-73 281.2 730 29.9
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 2.9e-68 264.2 192 69.8
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.8e-68 263.8 196 67.3
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 2.7e-58 231.1 315 43.2
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.3e-57 228.8 195 60.5
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.3e-57 228.0 267 50.6
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 7.4e-56 223.0 253 51.4
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 5.7e-48 196.8 206 54.9
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 1.7e-47 195.3 160 61.2
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 4.1e-46 190.7 204 51.5
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 5.3e-46 190.3 167 61.7
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 2.2e-44 184.9 644 27.5
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 9.4e-43 179.5 162 56.2
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 4.7e-42 177.2 152 61.2
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 1.7e-39 168.7 155 52.3
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 8.0e-26 123.2 136 51.5
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 3.7e-23 114.4 139 48.9
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.1e-22 110.9 141 43.3
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.6e-21 109.0 155 40.0
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.7e-20 105.5 136 42.6
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.0e-20 104.0 153 44.4
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 5.9e-13 80.5 58 67.2
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.2e-10 72.8 51 60.8
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.6e-10 72.4 76 47.4
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 2.1e-10 72.0 110 42.7
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.8e-09 68.9 130 36.2
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 3.0e-09 68.2 71 53.5


User provided reference genes

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