Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_006577 Daucus carota HOM05D004312 ORTHO05D005394 1.1e-236 822.8 390 100.0
DCAR_008679 Daucus carota HOM05D004312 ORTHO05D005394 1.5e-172 609.8 371 76.3
Dinv22305 Davidia involucrata HOM05D004312 ORTHO05D005394 1.0e-168 597.0 373 74.0
CSS0011160 Camellia sinensis var. sinensis HOM05D004312 ORTHO05D005394 1.1e-167 593.6 373 73.7
Cc05_g13230 Coffea canephora HOM05D004312 ORTHO05D005394 3.2e-167 592.0 373 73.5
CANSAT25G0949 Cannabis sativa HOM05D004312 ORTHO05D005394 7.2e-167 590.9 374 71.9
Ciclev10008697m.g Citrus clementina HOM05D004312 ORTHO05D005394 7.2e-167 590.9 365 74.5
CiPaw.11G183600 Carya illinoinensis HOM05D004312 ORTHO05D005394 9.4e-167 590.5 373 73.2
Nitab4.5_0000397g0030 Nicotiana tabacum HOM05D004312 ORTHO05D005394 9.4e-167 590.5 371 72.2
Nitab4.5_0009192g0020 Nicotiana tabacum HOM05D004312 ORTHO05D005394 8.0e-166 587.4 371 72.0
vmacro09746 Vaccinium macrocarpon HOM05D004312 ORTHO05D005394 8.0e-166 587.4 397 69.5
GSVIVG01014605001 Vitis vinifera HOM05D004312 ORTHO05D005394 8.0e-166 587.4 372 72.0
Actinidia35316 Actinidia chinensis HOM05D004312 ORTHO05D005394 2.3e-165 585.9 371 71.7
TAR624G0412 Trochodendron aralioides HOM05D004312 ORTHO05D005394 6.8e-165 584.3 371 71.7
Eucgr.F03425 Eucalyptus grandis HOM05D004312 ORTHO05D005394 8.8e-165 583.9 370 71.4
Gohir.A13G141400 Gossypium hirsutum HOM05D004312 ORTHO05D005394 3.4e-164 582.0 370 72.4
Potri.001G417300 Populus trichocarpa HOM05D004312 ORTHO05D005394 3.4e-164 582.0 367 71.9
Manes.15G076500 Manihot esculenta HOM05D004312 ORTHO05D005394 4.4e-164 581.6 373 71.6
QL08p013340 Quercus lobata HOM05D004312 ORTHO05D005394 4.4e-164 581.6 368 72.3
Nn1g06998 Nelumbo nucifera HOM05D004312 ORTHO05D005394 7.5e-164 580.9 365 72.9
TWI39G0013 Tripterygium wilfordii HOM05D004312 ORTHO05D005394 7.5e-164 580.9 372 72.3
Ca_12696_v3 Cicer arietinum L. HOM05D004312 ORTHO05D005394 9.8e-164 580.5 377 70.8
Gohir.D13G146100 Gossypium hirsutum HOM05D004312 ORTHO05D005394 9.8e-164 580.5 370 72.2
QL08p013781 Quercus lobata HOM05D004312 ORTHO05D005394 9.8e-164 580.5 373 71.3
Duzib213G0708 Durio zibethinus HOM05D004312 ORTHO05D005394 1.3e-163 580.1 370 72.2
Cfa020416 Carpinus fangiana HOM05D004312 ORTHO05D005394 1.7e-163 579.7 373 71.6
MBI18_g30687_MAGBIO Magnolia biondii HOM05D004312 ORTHO05D005394 2.8e-163 578.9 371 71.7
VMungo1215G3096 Vigna mungo HOM05D004312 ORTHO05D005394 2.8e-163 578.9 379 69.7
Thecc.07G052900 Theobroma cacao HOM05D004312 ORTHO05D005394 4.9e-163 578.2 370 71.4
Glyma.10G022000 Glycine max HOM05D004312 ORTHO05D005394 8.3e-163 577.4 372 70.7
HanXRQChr11g0332981 Helianthus annuus HOM05D004312 ORTHO05D005394 1.4e-162 576.6 373 70.5
ECA236G2119 Erigeron canadensis HOM05D004312 ORTHO05D005394 2.4e-162 575.9 374 69.5
Lsat_1_v5_gn_7_108381 Lactuca sativa HOM05D004312 ORTHO05D005394 2.4e-162 575.9 374 70.9
MD11G1227100 Malus domestica HOM05D004312 ORTHO05D005394 2.4e-162 575.9 367 71.9
MD03G1211700 Malus domestica HOM05D004312 ORTHO05D005394 3.1e-162 575.5 373 71.0
PGR031G3547 Punica granatum HOM05D004312 ORTHO05D005394 3.1e-162 575.5 367 70.8
Sed0007148 Sechium edule HOM05D004312 ORTHO05D005394 5.4e-162 574.7 373 71.3
HPP92_002196 Vanilla planifolia HOM05D004312 ORTHO05D005394 7.0e-162 574.3 367 71.4
Glyma.02G152200 Glycine max HOM05D004312 ORTHO05D005394 1.2e-161 573.5 372 70.2
Atru.chr2.3209 Acer truncatum HOM05D004312 ORTHO05D005394 2.7e-161 572.4 364 72.0
Psat6g038960 Pisum sativum HOM05D004312 ORTHO05D005394 2.7e-161 572.4 377 70.0
PGSC0003DMG401019226 Solanum tuberosum HOM05D004312 ORTHO05D005394 4.5e-161 571.6 372 70.2
Solyc07g064090.3 Solanum lycopersicum HOM05D004312 ORTHO05D005394 5.9e-161 571.2 372 69.9
Sopen07g032230 Solanum pennellii HOM05D004312 ORTHO05D005394 5.9e-161 571.2 372 69.9
THA.LOC104825403 Tarenaya hassleriana HOM05D004312 ORTHO05D005394 7.7e-161 570.9 364 70.6
CDE05G1308 Ceratophyllum demersum HOM05D004312 ORTHO05D005394 2.9e-160 568.9 367 70.8
Cpa.g.sc97.70 Carica papaya HOM05D004312 ORTHO05D005394 8.6e-160 567.4 369 69.1
Migut.M01812 Erythranthe guttata HOM05D004312 ORTHO05D005394 8.6e-160 567.4 373 69.2
FAN25G1427 Fragaria x ananassa HOM05D004312 ORTHO05D005394 1.1e-159 567.0 367 70.6
Lj8A165T113 Lonicera japonica HOM05D004312 ORTHO05D005394 1.1e-159 567.0 351 74.1
TPR.G33318 Trifolium pratense HOM05D004312 ORTHO05D005394 1.1e-159 567.0 377 69.2
AUR62015644 Chenopodium quinoa HOM05D004312 ORTHO05D005394 1.5e-159 566.6 365 69.6
FvH4_3g21810 Fragaria vesca HOM05D004312 ORTHO05D005394 1.9e-159 566.2 367 70.6
FAN11G3136 Fragaria x ananassa HOM05D004312 ORTHO05D005394 1.9e-159 566.2 367 70.6
PSO541G5632 Papaver somniferum HOM05D004312 ORTHO05D005394 1.9e-159 566.2 379 69.1
RcHm_v2.0_Chr5g0037411 Rosa chinensis HOM05D004312 ORTHO05D005394 1.9e-159 566.2 367 70.6
arahy.Tifrunner.gnm1.ann1.IBM9RL Arachis hypogaea HOM05D004312 ORTHO05D005394 2.5e-159 565.8 374 70.3
arahy.Tifrunner.gnm1.ann1.Z28QK4 Arachis hypogaea HOM05D004312 ORTHO05D005394 2.5e-159 565.8 374 70.3
Haze_09609 Corylus avellana HOM05D004312 ORTHO05D005394 3.3e-159 565.5 392 68.4
PSO675G7739 Papaver somniferum HOM05D004312 ORTHO05D005394 5.5e-159 564.7 379 68.9
Lalb_Chr14g0366111 Lupinus albus HOM05D004312 ORTHO05D005394 9.5e-159 563.9 372 70.2
MSTRG.6890 Avicennia marina HOM05D004312 ORTHO05D005394 1.0e-157 560.5 367 70.0
Medtr1g028310 Medicago truncatula HOM05D004312 ORTHO05D005394 1.8e-157 559.7 373 67.8
Lj3g0015514 Lotus japonicus HOM05D004312 ORTHO05D005394 5.2e-157 558.1 376 68.4
unitig_746.g26649 Utricularia gibba HOM05D004312 ORTHO05D005394 1.3e-155 553.5 352 71.6
COL.COLO4_09570 Corchorus olitorius HOM05D004312 ORTHO05D005394 2.2e-155 552.7 370 69.5
SEGI_02518 Sequoiadendron giganteum HOM05D004312 ORTHO05D005394 2.8e-155 552.4 368 69.0
SGA_v2.0_scaffold9G04799 Striga asiatica HOM05D004312 ORTHO05D005394 4.9e-155 551.6 403 63.8
Os08g0137100 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 5.4e-154 548.1 368 67.7
Phvul.005G091500 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 3.5e-153 545.4 372 66.1
Glyma.13G287200 Glycine max HOM05D004312 ORTHO05D005394 4.6e-153 545.0 367 67.0
FAN21G3328 Fragaria x ananassa HOM05D004312 ORTHO05D005394 2.3e-152 542.7 416 61.8
Aa31LG8G7480 Aethionema arabicum HOM05D004312 ORTHO05D005394 1.9e-151 539.7 373 66.5
AT3G20740 Arabidopsis thaliana HOM05D004312 ORTHO05D005394 7.3e-151 537.7 368 65.5
Carub.0003s2070 Capsella rubella HOM05D004312 ORTHO05D005394 7.3e-151 537.7 364 65.4
CARHR096560 Cardamine hirsuta HOM05D004312 ORTHO05D005394 1.2e-150 537.0 364 65.9
Thhalv10020971m.g Eutrema salsugineum HOM05D004312 ORTHO05D005394 1.2e-150 537.0 364 65.9
Zm00001eb416950 Zea mays HOM05D004312 ORTHO05D005394 4.7e-150 535.0 369 67.2
Hma1.2p1_1549F.1_g290070 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 8.0e-150 534.3 310 78.7
AL3G34660 Arabidopsis lyrata HOM05D004312 ORTHO05D005394 1.0e-149 533.9 368 65.8
Sp3g18760 Schrenkiella parvula HOM05D004312 ORTHO05D005394 2.3e-149 532.7 364 65.7
HanXRQChr15g0495681 Helianthus annuus HOM05D004312 ORTHO05D005394 4.4e-148 528.5 362 66.9
A01p34090 Brassica napus HOM05D004312 ORTHO05D005394 5.8e-148 528.1 364 65.1
BraA01t03513Z Brassica rapa HOM05D004312 ORTHO05D005394 5.8e-148 528.1 364 65.1
BcaB04g20634 Brassica carinata HOM05D004312 ORTHO05D005394 7.5e-148 527.7 364 64.8
BcaC09g49015 Brassica carinata HOM05D004312 ORTHO05D005394 1.7e-147 526.6 364 65.1
BolC1t04310H Brassica oleracea HOM05D004312 ORTHO05D005394 1.7e-147 526.6 364 65.1
EL10Ac4g07972 Beta vulgaris HOM05D004312 ORTHO05D005394 2.2e-147 526.2 372 64.8
C01p43500 Brassica napus HOM05D004312 ORTHO05D005394 1.1e-146 523.9 364 64.8
ATR0073G014 Amborella trichopoda HOM05D004312 ORTHO05D005394 6.0e-145 518.1 336 68.8
CsaV3_3G022910 Cucumis sativus L. HOM05D004312 ORTHO05D005394 6.0e-145 518.1 326 71.5
Lalb_Chr14g0366131 Lupinus albus HOM05D004312 ORTHO05D005394 1.0e-144 517.3 365 64.4
Os08g0137250 Oryza sativa ssp. japonica HOM05D004312 ORTHO05D005394 2.5e-143 512.7 373 60.6
PSO384G4488 Papaver somniferum HOM05D004312 ORTHO05D005394 2.5e-143 512.7 381 64.6
arahy.Tifrunner.gnm1.ann1.08T3T7 Arachis hypogaea HOM05D004312 ORTHO05D005394 3.6e-142 508.8 374 65.2
arahy.Tifrunner.gnm1.ann1.43SLKT Arachis hypogaea HOM05D004312 ORTHO05D005394 3.6e-142 508.8 374 65.2
A05p28030 Brassica napus HOM05D004312 ORTHO05D005394 1.4e-141 506.9 368 62.5
BraA05t21685Z Brassica rapa HOM05D004312 ORTHO05D005394 1.8e-141 506.5 368 62.2
BcaB06g26144 Brassica carinata HOM05D004312 ORTHO05D005394 5.2e-141 505.0 364 61.0
Sabra16G0283500 Salix brachista HOM05D004312 ORTHO05D005394 1.5e-140 503.4 400 60.2
Peaxi162Scf01086g00145 Petunia axillaris HOM05D004312 ORTHO05D005394 2.0e-140 503.1 292 77.7
Sc07g0002710 Simmondsia chinensis HOM05D004312 ORTHO05D005394 2.2e-139 499.6 310 71.9
BcaC05g28288 Brassica carinata HOM05D004312 ORTHO05D005394 1.4e-138 496.9 367 60.2
BolC5t33070H Brassica oleracea HOM05D004312 ORTHO05D005394 1.4e-138 496.9 367 60.2
Hund23308 Selenicereus undatus HOM05D004312 ORTHO05D005394 2.4e-138 496.1 371 63.1
C05p43470 Brassica napus HOM05D004312 ORTHO05D005394 4.1e-138 495.4 367 60.2
Gorai.013G163900 Gossypium raimondii HOM05D004312 ORTHO05D005394 4.1e-138 495.4 307 73.0
Mapoly0006s0078 Marchantia polymorpha HOM05D004312 ORTHO05D005394 1.6e-137 493.4 352 64.8
BraA05t21689Z Brassica rapa HOM05D004312 ORTHO05D005394 2.1e-137 493.0 367 59.7
A05p28070 Brassica napus HOM05D004312 ORTHO05D005394 4.6e-137 491.9 367 59.7
Phvul.007G166700 Phaseolus vulgaris HOM05D004312 ORTHO05D005394 4.6e-137 491.9 288 76.4
MELO3C018124.2 Cucumis melo HOM05D004312 ORTHO05D005394 1.3e-136 490.3 312 70.8
RhsimUnG0253200 Rhododendron simsii HOM05D004312 ORTHO05D005394 8.6e-136 487.6 616 44.2
Pp3c24_1010 Physcomitrium patens HOM05D004312 ORTHO05D005394 7.3e-135 484.6 365 61.4
Aqoxy6G01703 Aquilegia oxysepala HOM05D004312 ORTHO05D005394 1.2e-134 483.8 370 61.6
AagrBONN_evm.TU.Sc2ySwM_117.25 Anthoceros agrestis HOM05D004312 ORTHO05D005394 1.6e-134 483.4 354 61.9
BcaC05g28285 Brassica carinata HOM05D004312 ORTHO05D005394 7.6e-132 474.6 369 58.5
Zm00001eb173090 Zea mays HOM05D004312 ORTHO05D005394 7.6e-132 474.6 382 57.6
SalBow3G2463 Salvia bowleyana HOM05D004312 ORTHO05D005394 1.9e-130 469.9 373 60.9
PSO339G5963 Papaver somniferum HOM05D004312 ORTHO05D005394 2.1e-129 466.5 386 60.6
ClCG05G014780 Citrullus lanatus HOM05D004312 ORTHO05D005394 1.1e-127 460.7 378 58.7
SMO347G0342 Selaginella moellendorffii HOM05D004312 ORTHO05D005394 1.2e-126 457.2 352 59.4
AUR62020555 Chenopodium quinoa HOM05D004312 ORTHO05D005394 6.2e-126 454.9 365 60.0
BolC5t33065H Brassica oleracea HOM05D004312 ORTHO05D005394 8.1e-126 454.5 368 57.3
Prupe.4G202200 Prunus persica HOM05D004312 ORTHO05D005394 8.4e-123 444.5 256 78.9
Hma1.2p1_0562F.1_g179020 Hydrangea macrophylla HOM05D004312 ORTHO05D005394 2.8e-110 402.9 262 71.0
BcaB06g26146 Brassica carinata HOM05D004312 ORTHO05D005394 6.9e-109 398.3 360 50.0
QL08p013465 Quercus lobata HOM05D004312 ORTHO05D005394 2.9e-107 392.9 259 69.1
BcaC05g28287 Brassica carinata HOM05D004312 ORTHO05D005394 9.3e-98 361.3 334 51.2
CBR_g21046 Chara braunii HOM05D004312 ORTHO05D005394 3.4e-92 342.8 361 49.6
A05p28060 Brassica napus HOM05D004312 ORTHO05D005394 1.0e-91 341.3 314 49.7
Actinidia10705 Actinidia chinensis HOM05D004312 ORTHO05D005394 3.6e-81 306.2 330 47.6
SalBow1G0135 Salvia bowleyana HOM05D004312 ORTHO05D005394 6.1e-81 305.4 207 68.1
Glyma.12G214400 Glycine max HOM05D004312 ORTHO05D005394 1.4e-80 304.3 243 60.5
C05p43330 Brassica napus HOM05D004312 ORTHO05D005394 1.5e-79 300.8 281 51.6
BolC5t33069H Brassica oleracea HOM05D004312 ORTHO05D005394 4.3e-79 299.3 259 53.3
C05p43450 Brassica napus HOM05D004312 ORTHO05D005394 7.4e-79 298.5 257 53.7
PRCOL_00001232 Prasinoderma coloniale HOM05D004312 ORTHO05D005394 7.7e-68 261.9 383 34.7
Haze_27219 Corylus avellana HOM05D004312 ORTHO05D005394 2.9e-67 260.0 382 38.2
MCO04G236 Micromonas commoda HOM05D004312 ORTHO05D005394 3.5e-60 236.5 401 35.7
MCO04G208 Micromonas commoda HOM05D004312 ORTHO05D005394 3.6e-57 226.5 428 33.4
Duzib116G0859 Durio zibethinus HOM05D004312 ORTHO05D005394 3.2e-50 203.4 149 64.4
CsaV3_UNG229030 Cucumis sativus L. HOM05D004312 ORTHO05D005394 4.2e-50 203.0 380 36.1
QL08p013461 Quercus lobata HOM05D004312 ORTHO05D005394 7.5e-47 192.2 115 75.7
BraA05t21687Z Brassica rapa HOM05D004312 ORTHO05D005394 1.6e-44 184.5 142 58.5
SalBow1G5971 Salvia bowleyana HOM05D004312 ORTHO05D005394 1.9e-42 177.6 117 68.4
SalBow6G7263 Salvia bowleyana HOM05D004312 ORTHO05D005394 1.9e-42 177.6 117 68.4
SalBow1G3580 Salvia bowleyana HOM05D004312 ORTHO05D005394 1.2e-41 174.9 117 68.4
BcaC05g28286 Brassica carinata HOM05D002786 ORTHO05D005394 4.4e-39 166.4 257 33.5
Cre16.g693750 Chlamydomonas reinhardtii HOM05D004312 ORTHO05D005394 2.7e-36 157.1 491 25.7
Aa31LG8G7490 Aethionema arabicum HOM05D004312 ORTHO05D005394 3.0e-35 153.7 126 57.1
HanXRQChr09g0244121 Helianthus annuus HOM05D004312 ORTHO05D005394 1.1e-29 135.2 135 50.4
BraA05t21688Z Brassica rapa HOM05D004312 ORTHO05D005394 2.5e-26 124.0 118 47.5
VMungo0251G2959 Vigna mungo HOM05D004312 ORTHO05D005394 1.1e-21 108.6 79 62.0
Cfa024711 Carpinus fangiana HOM05D004312 ORTHO05D122356 3.0e-11 73.9 204 23.0
Oeu062615.1 Olea europaea HOM05D004312 ORTHO05D005394 8.1e-09 65.9 55 47.3
CAN.G337.148 Capsicum annuum HOM05D004312 ORTHO05D005394 1.4e-08 65.1 53 49.1
Peaxi162Scf01086g00127 Petunia axillaris HOM05D004312 ORTHO05D005394 8.9e-08 62.4 54 48.1
Os01g0177100 Oryza sativa ssp. japonica HOM05D000836 ORTHO05D000709 1.2e-07 62.0 288 25.3
Aa31LG10G5040 Aethionema arabicum HOM05D000645 ORTHO05D000494 3.4e-07 60.5 95 32.6
C06p10310 Brassica napus HOM05D004312 ORTHO05D026447 3.4e-07 60.5 48 50.0
BolC6t36105H Brassica oleracea HOM05D004312 ORTHO05D026447 3.4e-07 60.5 48 50.0
CARHR038860 Cardamine hirsuta HOM05D000645 ORTHO05D000494 4.4e-07 60.1 94 31.9
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 9.9e-07 58.9 108 33.3
THA.LOC104820461 Tarenaya hassleriana HOM05D000645 ORTHO05D000494 9.9e-07 58.9 155 25.8
arahy.Tifrunner.gnm1.ann1.DV46WW Arachis hypogaea HOM05D000645 ORTHO05D000494 1.3e-06 58.5 78 38.5
MBI04_g35984_MAGBIO Magnolia biondii HOM05D000645 ORTHO05D000494 1.3e-06 58.5 103 32.0
AT1G48870 Arabidopsis thaliana HOM05D000645 ORTHO05D000494 1.7e-06 58.2 94 30.9
arahy.Tifrunner.gnm1.ann1.PH2I0N Arachis hypogaea HOM05D000645 ORTHO05D000494 2.2e-06 57.8 102 34.3
Carub.0001s3801 Capsella rubella HOM05D000645 ORTHO05D000494 2.2e-06 57.8 94 30.9
Thhalv10011347m.g Eutrema salsugineum HOM05D000645 ORTHO05D000494 2.2e-06 57.8 81 35.8
BcaB07g33712 Brassica carinata HOM05D000645 ORTHO05D000494 2.9e-06 57.4 93 31.2
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 2.9e-06 57.4 99 34.3
PSO017G5891 Papaver somniferum HOM05D000645 ORTHO05D000494 3.8e-06 57.0 78 37.2
Peaxi162Scf00409g00219 Petunia axillaris HOM05D000836 ORTHO05D000709 3.8e-06 57.0 116 33.6
AL1G55660 Arabidopsis lyrata HOM05D000645 ORTHO05D000494 4.9e-06 56.6 94 29.8
Sed0015562 Sechium edule HOM05D000645 ORTHO05D000494 4.9e-06 56.6 104 31.7
Sopen08g002880 Solanum pennellii HOM05D000836 ORTHO05D000709 4.9e-06 56.6 114 27.2
BcaC08g43083 Brassica carinata HOM05D000645 ORTHO05D000494 6.4e-06 56.2 93 31.2
A06p04150 Brassica napus HOM05D000645 ORTHO05D000494 6.4e-06 56.2 93 31.2
BolC6t35482H Brassica oleracea HOM05D000645 ORTHO05D000494 6.4e-06 56.2 93 31.2
BraA06t23621Z Brassica rapa HOM05D000645 ORTHO05D000494 6.4e-06 56.2 93 31.2
CBR_g51649 Chara braunii HOM05D000163 ORTHO05D009137 6.4e-06 56.2 112 30.4
Hma1.2p1_0440F.1_g153660 Hydrangea macrophylla HOM05D000645 ORTHO05D000494 6.4e-06 56.2 110 29.1
Aa31LG8G7500 Aethionema arabicum HOM05D004312 ORTHO05D026447 8.4e-06 55.8 52 48.1


User provided reference genes

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