Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005368 Daucus carota HOM05D004276 ORTHO05D005126 2.9e-81 305.1 143 100.0
ClCG10G016120 Citrullus lanatus HOM05D004276 ORTHO05D005126 2.0e-37 159.5 79 89.9
DCAR_017055 Daucus carota HOM05D004276 ORTHO05D005126 5.7e-37 157.9 74 97.3
SalBow3G3563 Salvia bowleyana HOM05D004276 ORTHO05D005126 7.5e-37 157.5 86 81.4
ECA234G2670 Erigeron canadensis HOM05D004276 ORTHO05D005126 2.8e-36 155.6 74 94.6
FAN01G1870 Fragaria x ananassa HOM05D004276 ORTHO05D005126 2.8e-36 155.6 91 78.0
FAN10G0892 Fragaria x ananassa HOM05D004276 ORTHO05D005126 2.8e-36 155.6 91 78.0
HanXRQChr17g0562231 Helianthus annuus HOM05D004276 ORTHO05D005126 2.8e-36 155.6 74 94.6
Lj9C594T5 Lonicera japonica HOM05D004276 ORTHO05D005126 2.8e-36 155.6 74 94.6
CSS0045220 Camellia sinensis var. sinensis HOM05D004276 ORTHO05D005126 8.3e-36 154.1 74 91.9
Prupe.2G181300 Prunus persica HOM05D004276 ORTHO05D005126 1.4e-35 153.3 74 93.2
AUR62004429 Chenopodium quinoa HOM05D004276 ORTHO05D005126 1.8e-35 152.9 77 87.0
MBI06_g29321_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 1.8e-35 152.9 74 91.9
PGR031G2222 Punica granatum HOM05D004276 ORTHO05D005126 1.8e-35 152.9 74 93.2
VMungo1080G0287 Vigna mungo HOM05D004276 ORTHO05D005126 1.8e-35 152.9 75 92.0
Peaxi162Scf01254g00021 Petunia axillaris HOM05D004276 ORTHO05D005126 2.4e-35 152.5 75 89.3
PGSC0003DMG402002606 Solanum tuberosum HOM05D004276 ORTHO05D005126 2.4e-35 152.5 74 91.9
HPP92_002823 Vanilla planifolia HOM05D004276 ORTHO05D005126 2.4e-35 152.5 74 91.9
HPP92_002881 Vanilla planifolia HOM05D004276 ORTHO05D005126 2.4e-35 152.5 74 91.9
Aqoxy7G00185 Aquilegia oxysepala HOM05D004276 ORTHO05D005126 3.1e-35 152.1 74 91.9
Ca_09481_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 3.1e-35 152.1 75 92.0
MELO3C009766.2 Cucumis melo HOM05D004276 ORTHO05D005126 3.1e-35 152.1 74 91.9
Nitab4.5_0000305g0280 Nicotiana tabacum HOM05D004276 ORTHO05D005126 3.1e-35 152.1 74 90.5
Nitab4.5_0004748g0010 Nicotiana tabacum HOM05D004276 ORTHO05D005126 3.1e-35 152.1 74 90.5
Solyc03g121130.3 Solanum lycopersicum HOM05D004276 ORTHO05D005126 3.1e-35 152.1 74 90.5
Sopen03g039960 Solanum pennellii HOM05D004276 ORTHO05D005126 3.1e-35 152.1 74 90.5
Ciclev10022345m.g Citrus clementina HOM05D004276 ORTHO05D005126 4.1e-35 151.8 74 90.5
Haze_15633 Corylus avellana HOM05D004276 ORTHO05D005126 4.1e-35 151.8 78 85.9
CsaV3_3G040290 Cucumis sativus L. HOM05D004276 ORTHO05D005126 4.1e-35 151.8 74 90.5
Eucgr.E00082 Eucalyptus grandis HOM05D004276 ORTHO05D005126 4.1e-35 151.8 74 91.9
PSO302G0143 Papaver somniferum HOM05D004276 ORTHO05D005126 4.1e-35 151.8 74 90.5
PSO384G3706 Papaver somniferum HOM05D004276 ORTHO05D005126 4.1e-35 151.8 74 90.5
SGA_v2.0_scaffold95G28798 Striga asiatica HOM05D004276 ORTHO05D005126 4.1e-35 151.8 78 85.9
Cfa003820 Carpinus fangiana HOM05D004276 ORTHO05D005126 5.4e-35 151.4 77 87.0
Ca_25855_v3 Cicer arietinum L. HOM05D004276 ORTHO05D005126 5.4e-35 151.4 76 89.5
PSO135G0697 Papaver somniferum HOM05D004276 ORTHO05D005126 5.4e-35 151.4 74 89.2
PSO210G0614 Papaver somniferum HOM05D004276 ORTHO05D005126 5.4e-35 151.4 74 89.2
SEGI_17768 Sequoiadendron giganteum HOM05D004276 ORTHO05D005126 5.4e-35 151.4 74 90.5
Actinidia20176 Actinidia chinensis HOM05D004276 ORTHO05D005126 7.0e-35 151.0 74 89.2
Cc02_g38790 Coffea canephora HOM05D004276 ORTHO05D005126 7.0e-35 151.0 74 89.2
TWI59G1141 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 7.0e-35 151.0 74 89.2
Atru.chr5.606 Acer truncatum HOM05D004276 ORTHO05D005126 9.2e-35 150.6 74 90.5
EL10Ac1g00335 Beta vulgaris HOM05D004276 ORTHO05D005126 9.2e-35 150.6 74 90.5
Lalb_Chr04g0261801 Lupinus albus HOM05D004276 ORTHO05D005126 9.2e-35 150.6 74 91.9
Thecc.01G349900 Theobroma cacao HOM05D004276 ORTHO05D005126 9.2e-35 150.6 74 89.2
Glyma.19G251700 Glycine max HOM05D004276 ORTHO05D005126 1.2e-34 150.2 74 91.9
Lj1g0009566 Lotus japonicus HOM05D004276 ORTHO05D005126 1.2e-34 150.2 74 91.9
Lj3g0009308 Lotus japonicus HOM05D004276 ORTHO05D005126 1.2e-34 150.2 74 91.9
Mapoly0007s0029 Marchantia polymorpha HOM05D004276 ORTHO05D005126 1.2e-34 150.2 74 89.2
MSTRG.17308 Avicennia marina HOM05D004276 ORTHO05D005126 1.6e-34 149.8 74 90.5
Nn5g30298 Nelumbo nucifera HOM05D004276 ORTHO05D005126 1.6e-34 149.8 74 89.2
Oeu004920.1 Olea europaea HOM05D004276 ORTHO05D005126 1.6e-34 149.8 125 63.2
Rhsim01G0168500 Rhododendron simsii HOM05D004276 ORTHO05D005126 1.6e-34 149.8 74 87.8
Rhsim11G0144600 Rhododendron simsii HOM05D004276 ORTHO05D005126 1.6e-34 149.8 74 87.8
unitig_736.g22824 Utricularia gibba HOM05D004276 ORTHO05D005126 1.6e-34 149.8 74 89.2
FvH4_7g15670 Fragaria vesca HOM05D004276 ORTHO05D005126 2.0e-34 149.4 74 91.9
FAN06G0043 Fragaria x ananassa HOM05D004276 ORTHO05D005126 2.0e-34 149.4 74 91.9
MBI07_g03903_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 2.0e-34 149.4 108 67.6
Phvul.005G117100 Phaseolus vulgaris HOM05D004276 ORTHO05D005126 2.0e-34 149.4 74 90.5
Sc23g0002430 Simmondsia chinensis HOM05D004276 ORTHO05D005126 2.0e-34 149.4 74 89.2
TWI14G0490 Tripterygium wilfordii HOM05D004276 ORTHO05D005126 2.0e-34 149.4 74 87.8
Ah.05g180030 Amaranthus hybridus HOM05D004276 ORTHO05D005126 2.7e-34 149.1 74 89.2
AUR62022636 Chenopodium quinoa HOM05D004276 ORTHO05D005126 2.7e-34 149.1 74 89.2
Duzib133G1515 Durio zibethinus HOM05D004276 ORTHO05D005126 2.7e-34 149.1 74 87.8
Migut.B01814 Erythranthe guttata HOM05D004276 ORTHO05D005126 2.7e-34 149.1 74 89.2
Migut.N01579 Erythranthe guttata HOM05D004276 ORTHO05D005126 2.7e-34 149.1 74 89.2
Potri.002G166200 Populus trichocarpa HOM05D004276 ORTHO05D005126 2.7e-34 149.1 74 89.2
Duzib138G1911 Durio zibethinus HOM05D004276 ORTHO05D005126 3.5e-34 148.7 74 87.8
Potri.014G092600 Populus trichocarpa HOM05D004276 ORTHO05D005126 3.5e-34 148.7 74 89.2
Sabra14G0067200 Salix brachista HOM05D004276 ORTHO05D005126 3.5e-34 148.7 74 89.2
SalBow1G3478 Salvia bowleyana HOM05D004276 ORTHO05D005126 3.5e-34 148.7 75 89.3
HPP92_002892 Vanilla planifolia HOM05D004276 ORTHO05D005126 3.5e-34 148.7 74 90.5
MD01G1073500 Malus domestica HOM05D004276 ORTHO05D005126 4.5e-34 148.3 74 89.2
Manes.11G086700 Manihot esculenta HOM05D004276 ORTHO05D005126 4.5e-34 148.3 74 87.8
Sed0018576 Sechium edule HOM05D004276 ORTHO05D005126 4.5e-34 148.3 74 90.5
SMO117G0002 Selaginella moellendorffii HOM05D004276 ORTHO05D005126 4.5e-34 148.3 75 86.7
TAR374G1118 Trochodendron aralioides HOM05D004276 ORTHO05D005126 4.5e-34 148.3 74 89.2
TAR375G0154 Trochodendron aralioides HOM05D004276 ORTHO05D005126 4.5e-34 148.3 74 89.2
RcHm_v2.0_Chr1g0358391 Rosa chinensis HOM05D004276 ORTHO05D005126 5.9e-34 147.9 74 89.2
Cpa.g.sc184.11 Carica papaya HOM05D004276 ORTHO05D005126 7.8e-34 147.5 74 87.8
FAN10G4166 Fragaria x ananassa HOM05D004276 ORTHO05D005126 7.8e-34 147.5 101 70.3
THA.LOC104802050 Tarenaya hassleriana HOM05D004276 ORTHO05D005126 7.8e-34 147.5 74 87.8
Glyma.12G191100 Glycine max HOM05D004276 ORTHO05D005126 1.0e-33 147.1 74 90.5
Glyma.13G310600 Glycine max HOM05D004276 ORTHO05D005126 1.0e-33 147.1 74 90.5
Gohir.A11G093300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 1.0e-33 147.1 74 86.5
Gohir.D11G098300 Gossypium hirsutum HOM05D004276 ORTHO05D005126 1.0e-33 147.1 74 86.5
Os06g0158600 Oryza sativa ssp. japonica HOM05D004276 ORTHO05D005126 1.0e-33 147.1 74 86.5
GSVIVG01026915001 Vitis vinifera HOM05D004276 ORTHO05D005126 1.0e-33 147.1 74 87.8
GSVIVG01027024001 Vitis vinifera HOM05D004276 ORTHO05D005126 1.0e-33 147.1 74 87.8
Zm00001eb376300 Zea mays HOM05D004276 ORTHO05D005126 1.0e-33 147.1 74 86.5
Zm00001eb376330 Zea mays HOM05D004276 ORTHO05D005126 1.0e-33 147.1 74 86.5
CBR_g20329 Chara braunii HOM05D004276 ORTHO05D005126 1.3e-33 146.7 74 87.8
Gorai.007G104500 Gossypium raimondii HOM05D004276 ORTHO05D005126 1.3e-33 146.7 74 85.1
Aa31LG1G27620 Aethionema arabicum HOM05D004276 ORTHO05D005126 1.7e-33 146.4 75 85.3
QL04p058903 Quercus lobata HOM05D004276 ORTHO05D005126 1.7e-33 146.4 74 86.5
CiPaw.01G069700 Carya illinoinensis HOM05D004276 ORTHO05D005126 2.3e-33 146.0 74 87.8
CANSAT78G1628 Cannabis sativa HOM05D004276 ORTHO05D005126 2.9e-33 145.6 74 85.1
Zm00001eb376230 Zea mays HOM05D004276 ORTHO05D005126 2.9e-33 145.6 74 86.5
Thhalv10001643m.g Eutrema salsugineum HOM05D004276 ORTHO05D005126 5.0e-33 144.8 74 85.1
AL1G39200 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 6.6e-33 144.4 74 85.1
Carub.0004s2893 Capsella rubella HOM05D004276 ORTHO05D005126 6.6e-33 144.4 74 85.1
A04p34320 Brassica napus HOM05D004276 ORTHO05D005126 8.6e-33 144.1 95 71.6
C04p72140 Brassica napus HOM05D004276 ORTHO05D005126 1.1e-32 143.7 95 70.5
BraA04t18893Z Brassica rapa HOM05D004276 ORTHO05D005126 1.1e-32 143.7 95 70.5
Pp3c7_15560 Physcomitrium patens HOM05D004276 ORTHO05D005126 2.5e-32 142.5 74 83.8
A05p01570 Brassica napus HOM05D004276 ORTHO05D005126 3.3e-32 142.1 75 82.7
C04p01790 Brassica napus HOM05D004276 ORTHO05D005126 3.3e-32 142.1 75 82.7
BraA05t19152Z Brassica rapa HOM05D004276 ORTHO05D005126 3.3e-32 142.1 75 82.7
AT2G46230 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 4.3e-32 141.7 74 83.8
AT1G26530 Arabidopsis thaliana HOM05D004276 ORTHO05D005126 5.6e-32 141.4 78 79.5
Medtr6g086290 Medicago truncatula HOM05D004276 ORTHO05D005126 5.6e-32 141.4 74 85.1
Medtr7g116720 Medicago truncatula HOM05D004276 ORTHO05D005126 5.6e-32 141.4 74 85.1
TPR.G4704 Trifolium pratense HOM05D004276 ORTHO05D005126 5.6e-32 141.4 74 86.5
AagrBONN_evm.TU.Sc2ySwM_368.2613 Anthoceros agrestis HOM05D004276 ORTHO05D005126 7.3e-32 141.0 74 82.4
arahy.Tifrunner.gnm1.ann1.4FI6MM Arachis hypogaea HOM05D004276 ORTHO05D005126 7.3e-32 141.0 74 85.1
arahy.Tifrunner.gnm1.ann1.BP50A3 Arachis hypogaea HOM05D004276 ORTHO05D005126 7.3e-32 141.0 74 85.1
arahy.Tifrunner.gnm1.ann1.K2BJ17 Arachis hypogaea HOM05D004276 ORTHO05D005126 7.3e-32 141.0 74 85.1
arahy.Tifrunner.gnm1.ann1.X3APAR Arachis hypogaea HOM05D004276 ORTHO05D005126 7.3e-32 141.0 74 85.1
Pp3c11_12810 Physcomitrium patens HOM05D004276 ORTHO05D005126 7.3e-32 141.0 74 82.4
Sabra02G0145400 Salix brachista HOM05D004276 ORTHO05D005126 7.3e-32 141.0 74 83.8
BcaB06g29435 Brassica carinata HOM05D004276 ORTHO05D005126 9.5e-32 140.6 73 83.6
BcaC02g07027 Brassica carinata HOM05D004276 ORTHO05D005126 9.5e-32 140.6 73 83.6
BcaC02g12509 Brassica carinata HOM05D004276 ORTHO05D005126 9.5e-32 140.6 73 83.6
BcaC02g12702 Brassica carinata HOM05D004276 ORTHO05D005126 9.5e-32 140.6 73 83.6
Sp4g28280 Schrenkiella parvula HOM05D004276 ORTHO05D005126 9.5e-32 140.6 74 82.4
Psat3g005280 Pisum sativum HOM05D004276 ORTHO05D005126 1.2e-31 140.2 74 85.1
CARHR025440 Cardamine hirsuta HOM05D004276 ORTHO05D005126 1.6e-31 139.8 74 82.4
MBI02_g45291_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 2.8e-31 139.0 74 83.8
AL4G45500 Arabidopsis lyrata HOM05D004276 ORTHO05D005126 8.0e-31 137.5 74 82.4
Cre16.g679450 Chlamydomonas reinhardtii HOM05D004276 ORTHO05D005126 1.0e-30 137.1 74 78.4
FAN06G3034 Fragaria x ananassa HOM05D004276 ORTHO05D005126 1.8e-30 136.3 73 86.3
MCO11G412 Micromonas commoda HOM05D004276 ORTHO05D005126 5.8e-29 131.3 74 74.3
QL06p021685 Quercus lobata HOM05D004276 ORTHO05D005126 5.8e-29 131.3 118 55.9
Cc00_g30190 Coffea canephora HOM05D004276 ORTHO05D005126 2.4e-27 125.9 74 78.4
Glyma.03G254200 Glycine max HOM05D004276 ORTHO05D005126 2.5e-24 115.9 59 88.1
PRCOL_00001531 Prasinoderma coloniale HOM05D004276 ORTHO05D005126 5.6e-24 114.8 74 71.6
Haze_27571 Corylus avellana HOM05D004276 ORTHO05D005126 8.9e-22 107.5 63 66.7
Lsat_1_v5_gn_4_34121 Lactuca sativa HOM05D004276 ORTHO05D005126 6.4e-20 101.3 49 89.8
CAN.G1143.25 Capsicum annuum HOM05D004276 ORTHO05D005126 8.3e-20 100.9 49 89.8
Sed0023585 Sechium edule HOM05D004276 ORTHO05D005126 1.1e-19 100.5 75 64.0
ATR0585G106 Amborella trichopoda HOM05D004276 ORTHO05D005126 4.1e-19 98.6 49 87.8
Zm00001eb376200 Zea mays HOM05D004276 ORTHO05D005126 4.1e-19 98.6 74 63.5
Zm00001eb376270 Zea mays HOM05D004276 ORTHO05D005126 4.1e-19 98.6 74 63.5
ATR0580G146 Amborella trichopoda HOM05D000306 ORTHO05D005993 9.2e-19 97.4 48 89.6
CDE05G0403 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 2.1e-18 96.3 46 89.1
Actinidia10088 Actinidia chinensis HOM05D004276 ORTHO05D005126 4.6e-18 95.1 51 82.4
Lsat_1_v5_gn_2_67120 Lactuca sativa HOM05D004276 ORTHO05D005126 7.8e-18 94.4 54 79.6
MBI18_g19490_MAGBIO Magnolia biondii HOM05D004276 ORTHO05D005126 1.0e-17 94.0 74 62.2
CDE11G0451 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 3.0e-17 92.4 46 89.1
CDE11G0794 Ceratophyllum demersum HOM05D004276 ORTHO05D005126 1.4e-14 83.6 39 87.2
Dinv32536 Davidia involucrata HOM05D004276 ORTHO05D005126 5.1e-09 65.1 29 93.1
Hund16683 Selenicereus undatus HOM05D004276 ORTHO05D005126 5.1e-09 65.1 29 93.1
COL.COLO4_06361 Corchorus olitorius HOM05D004276 ORTHO05D005126 1.1e-08 63.9 29 93.1
SHI12502 Sapria himalayana HOM05D004276 ORTHO05D005126 1.5e-08 63.5 61 55.7
Hma1.2p1_0248F.1_g102040 Hydrangea macrophylla HOM05D001996 ORTHO05D002072 3.3e-08 62.4 29 86.2
COL.COLO4_16625 Corchorus olitorius HOM05D005906 ORTHO05D007359 7.3e-08 61.2 28 89.3


User provided reference genes

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