Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 4.7e-310 1067.0 535 100.0
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.4e-248 862.8 827 60.2
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.9e-170 603.2 531 56.5
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 1.9e-170 603.2 534 57.3
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 3.9e-163 578.9 533 55.5
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 1.1e-162 577.4 531 54.2
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 1.5e-159 567.0 534 55.1
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.9e-157 560.1 529 54.3
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.5e-157 558.5 536 51.5
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.2e-156 557.4 536 51.9
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.6e-156 557.0 536 53.9
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 1.6e-156 557.0 535 53.6
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 1.3e-155 553.9 529 54.3
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 9.6e-154 547.7 530 53.2
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.8e-153 546.2 530 53.8
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 8.2e-153 544.7 532 52.8
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 2.9e-150 536.2 534 53.2
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.1e-149 534.3 532 52.4
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 7.1e-149 531.6 531 52.2
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.7e-148 529.6 536 49.3
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.0e-148 528.5 529 50.5
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.0e-147 527.7 542 49.8
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 3.0e-147 526.2 529 50.7
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 8.7e-147 524.6 529 50.1
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.3e-146 522.7 529 49.9
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 5.3e-144 515.4 543 49.4
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.7e-142 510.4 524 49.4
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.2e-142 510.0 524 49.4
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 5.5e-141 505.4 542 48.3
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 7.2e-141 505.0 535 49.0
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.6e-140 503.8 532 48.5
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.1e-140 503.4 539 49.5
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 2.7e-140 503.1 542 49.3
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 4.6e-140 502.3 537 49.0
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 4.6e-140 502.3 537 50.7
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 6.1e-140 501.9 540 47.4
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 7.9e-140 501.5 533 48.6
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.9e-138 496.9 539 47.9
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 3.3e-138 496.1 537 48.2
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 9.7e-138 494.6 540 47.0
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 9.7e-138 494.6 546 48.2
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.3e-137 494.2 537 48.0
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.7e-137 493.8 530 51.3
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 2.2e-137 493.4 528 49.1
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 3.1e-136 489.6 528 49.4
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 5.3e-136 488.8 543 48.1
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 6.9e-136 488.4 529 47.6
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 2.6e-135 486.5 529 48.2
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 3.4e-135 486.1 533 47.1
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 4.5e-135 485.7 531 48.4
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 7.7e-135 485.0 530 48.1
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.7e-134 483.8 527 49.5
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 5.0e-134 482.3 537 46.7
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 1.9e-133 480.3 536 48.1
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 1.9e-133 480.3 535 47.1
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 1.9e-133 480.3 532 48.7
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 2.7e-132 476.5 543 47.1
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 6.1e-132 475.3 533 48.2
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 8.8e-131 471.5 555 45.8
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.7e-129 467.2 547 44.8
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.7e-129 467.2 533 47.3
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 3.7e-129 466.1 533 47.5
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.3e-128 462.2 546 45.4
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.2e-127 461.1 532 47.4
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 3.8e-126 456.1 554 46.4
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 6.5e-126 455.3 536 45.1
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 8.5e-126 454.9 540 44.8
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.1e-125 454.5 528 45.6
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.5e-125 453.4 528 45.6
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.5e-125 452.2 527 45.4
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 6.7e-123 445.3 539 44.5
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 8.8e-123 444.9 528 46.0
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 2.2e-121 440.3 530 43.4
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 2.4e-120 436.8 531 46.0
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 4.1e-120 436.0 530 44.9
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 9.1e-120 434.9 537 42.5
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.6e-119 434.1 530 44.7
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 5.5e-117 425.6 540 43.9
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 9.4e-117 424.9 538 43.7
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 4.7e-116 422.5 543 44.2
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 6.1e-116 422.2 534 43.4
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 3.0e-115 419.9 536 43.1
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 4.0e-115 419.5 543 44.6
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 5.2e-115 419.1 444 49.3
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 9.7e-114 414.8 542 43.4
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 9.7e-114 414.8 536 42.4
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 6.3e-113 412.1 453 47.7
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.1e-112 411.4 530 44.2
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.5e-109 400.2 593 40.0
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.2e-109 399.4 516 44.6
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 3.0e-107 393.3 528 41.1
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 5.2e-107 392.5 526 40.5
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 1.2e-106 391.3 560 38.6
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 9.8e-106 388.3 540 41.9
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 4.8e-105 386.0 526 40.3
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 4.8e-105 386.0 526 40.3
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 4.8e-105 386.0 526 40.3
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 5.9e-103 379.0 528 40.0
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 8.6e-102 375.2 528 39.0
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 3.0e-99 366.7 544 41.9
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 2.8e-97 360.1 482 44.2
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 6.3e-97 359.0 426 46.0
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.1e-92 344.0 433 45.0
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 6.4e-89 332.4 335 53.4
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 6.0e-79 299.3 542 35.6
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 2.3e-78 297.4 277 54.9
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 5.6e-77 292.7 291 47.8
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 4.7e-76 289.7 578 35.5
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 4.0e-75 286.6 615 31.5
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.9e-75 285.4 287 49.8
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 3.7e-73 280.0 326 48.2
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 4.0e-67 260.0 228 53.5
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 2.6e-66 257.3 416 38.7
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 9.9e-66 255.4 323 44.9
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 1.5e-53 214.9 576 29.5
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 1.9e-48 198.0 562 28.8
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 6.7e-46 189.5 551 28.3
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.4e-43 181.8 196 43.4
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 4.6e-39 166.8 556 25.0
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 2.8e-36 157.5 295 33.6
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 3.7e-36 157.1 412 28.6
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 3.0e-30 137.5 299 29.4
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 1.3e-25 122.1 186 38.2
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 1.1e-24 119.0 124 48.4
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 5.7e-21 106.7 108 48.1
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.2e-18 99.0 134 39.6
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 4.5e-18 97.1 296 28.4
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 5.9e-18 96.7 95 49.5
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 7.7e-18 96.3 104 41.3
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 1.0e-17 95.9 112 46.4
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.5e-17 93.2 189 33.9
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-16 92.4 189 33.9
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 4.2e-16 90.5 237 32.1
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 3.3e-13 80.9 69 60.9
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-12 79.0 89 43.8
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.3e-12 79.0 207 29.0
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 5.9e-10 70.1 155 32.9
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.7e-10 69.7 110 36.4
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 6.5e-09 66.6 186 25.3
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.1e-08 65.9 156 32.7
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.4e-08 65.5 62 45.2
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-07 61.2 81 35.8
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 4.7e-07 60.5 61 42.6


User provided reference genes

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