Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 0.0e+00 1695.6 862 100.0
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 0.0e+00 1203.0 854 72.6
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 7.9e-299 1030.4 863 62.8
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 3.0e-298 1028.5 869 61.7
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 9.6e-297 1023.5 864 61.3
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.8e-290 1002.7 864 60.9
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 1.6e-288 996.1 865 60.5
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 6.3e-288 994.2 865 59.8
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 8.2e-288 993.8 865 59.8
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 9.0e-287 990.3 864 60.5
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 9.0e-287 990.3 867 59.7
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 2.2e-285 985.7 858 59.8
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 4.6e-283 978.0 865 60.1
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 7.9e-283 977.2 902 58.3
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 7.9e-283 977.2 863 60.0
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 1.5e-281 973.0 866 59.1
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.6e-281 972.2 866 58.5
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 9.7e-281 970.3 866 58.8
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 5.3e-279 964.5 866 58.4
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 2.6e-278 962.2 859 58.4
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 2.2e-277 959.1 865 58.0
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 5.0e-277 958.0 867 58.1
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.1e-276 956.8 865 59.3
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.9e-276 956.1 861 57.3
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 5.5e-276 954.5 880 58.2
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 7.2e-276 954.1 873 58.3
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 9.4e-276 953.7 868 58.1
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 1.2e-275 953.4 866 57.9
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 2.1e-275 952.6 866 58.4
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 1.4e-274 949.9 867 59.3
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 3.9e-274 948.3 866 58.3
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 8.8e-274 947.2 865 58.7
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 8.8e-274 947.2 866 58.1
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 9.7e-273 943.7 883 58.6
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 3.7e-272 941.8 865 58.3
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 3.1e-271 938.7 865 57.9
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 5.3e-271 937.9 861 56.9
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 7.7e-270 934.1 879 57.2
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 6.5e-269 931.0 872 57.8
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.2e-268 928.7 863 57.2
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 7.2e-268 927.5 864 56.8
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.6e-267 926.4 865 57.3
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.7e-267 925.6 849 58.8
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 2.7e-267 925.6 859 56.9
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.0e-266 923.7 861 57.1
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 1.8e-266 922.9 865 57.0
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 5.2e-266 921.4 856 57.7
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 4.1e-263 911.8 862 55.7
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-260 903.7 736 63.3
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 1.1e-260 903.7 903 54.5
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 4.2e-260 901.7 872 57.3
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 5.5e-260 901.4 850 57.1
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 7.2e-260 901.0 871 56.9
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 9.4e-260 900.6 842 57.7
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 1.2e-259 900.2 919 53.2
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 2.1e-259 899.4 864 55.1
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.7e-259 899.0 864 55.1
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 3.6e-259 898.7 864 55.3
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 4.7e-259 898.3 861 57.3
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 6.1e-259 897.9 872 57.1
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.4e-258 896.7 763 61.5
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 3.4e-257 892.1 872 57.1
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.3e-256 890.2 871 56.6
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 2.2e-256 889.4 866 55.5
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 3.5e-254 882.1 863 54.3
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 4.5e-254 881.7 883 54.4
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 5.9e-254 881.3 859 54.9
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 7.7e-254 880.9 874 54.7
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 2.9e-253 879.0 804 58.2
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 3.8e-253 878.6 873 54.4
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 1.9e-252 876.3 788 59.4
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 2.1e-251 872.8 881 53.8
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 4.7e-251 871.7 868 54.1
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 6.1e-251 871.3 860 55.3
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 1.4e-250 870.2 866 54.5
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 3.0e-250 869.0 852 54.8
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 3.0e-250 869.0 803 57.7
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 6.8e-250 867.8 876 54.0
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.5e-249 866.7 871 55.2
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 3.4e-249 865.5 877 53.0
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 3.4e-249 865.5 860 55.2
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 7.5e-249 864.4 875 53.9
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 2.8e-248 862.4 899 53.8
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 3.7e-248 862.1 860 54.4
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 1.1e-247 860.5 864 53.8
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 1.4e-247 860.1 876 53.4
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 2.4e-247 859.4 866 53.6
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 2.7e-246 855.9 859 54.8
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 2.7e-246 855.9 858 54.4
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 3.5e-246 855.5 870 53.9
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 3.5e-246 855.5 870 53.9
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 5.9e-246 854.7 873 54.0
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 1.0e-245 854.0 860 54.2
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.7e-245 853.2 876 53.5
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.7e-245 853.2 876 53.5
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 3.8e-245 852.0 864 53.7
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 5.0e-245 851.7 876 53.5
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 5.0e-245 851.7 866 54.2
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 6.6e-245 851.3 866 53.1
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 6.6e-245 851.3 882 52.8
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 1.5e-244 850.1 860 53.6
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 7.3e-244 847.8 860 53.7
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 1.0e-242 844.0 868 53.2
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.4e-242 843.6 876 53.0
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 2.3e-242 842.8 873 52.5
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 3.0e-242 842.4 864 53.1
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 5.7e-241 838.2 856 53.5
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 4.9e-240 835.1 858 53.7
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 6.4e-240 834.7 855 54.2
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 6.4e-240 834.7 861 52.1
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 1.8e-239 833.2 856 53.3
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 2.4e-239 832.8 846 54.5
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 2.7e-238 829.3 867 52.4
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 4.6e-238 828.6 846 54.4
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 4.6e-238 828.6 770 56.9
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 2.5e-236 822.8 859 52.7
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 7.3e-236 821.2 875 52.2
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 1.2e-235 820.5 876 52.6
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 2.8e-235 819.3 859 52.5
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 4.7e-235 818.5 860 52.6
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.0e-234 817.4 760 56.8
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 1.4e-234 817.0 867 54.0
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 1.2e-233 813.9 860 52.2
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 1.2e-233 813.9 867 52.4
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 9.8e-233 810.8 860 52.4
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 9.2e-231 804.3 672 61.3
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 1.6e-230 803.5 866 52.5
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 1.7e-229 800.0 831 53.5
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 6.6e-229 798.1 858 51.4
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 3.6e-227 792.3 854 51.5
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.0e-225 786.6 872 52.4
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 2.0e-225 786.6 869 51.6
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.2e-222 777.3 810 52.5
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.0e-221 774.2 871 50.4
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 3.9e-221 772.3 858 50.7
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 2.5e-220 769.6 860 50.3
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 2.3e-218 763.1 870 49.5
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 4.0e-218 762.3 862 51.4
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 2.4e-215 753.1 461 88.7
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 6.2e-211 738.4 865 49.5
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.8e-210 736.9 847 50.1
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 2.4e-210 736.5 875 48.5
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 1.2e-201 707.6 739 52.2
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 1.1e-170 604.7 626 55.6
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 6.9e-170 602.1 741 47.8
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 3.2e-159 566.6 918 38.2
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 1.3e-152 544.7 869 37.1
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 1.7e-152 544.3 428 63.8
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 2.5e-143 513.8 251 98.8
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 5.2e-141 506.1 939 35.9
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 4.2e-135 486.5 941 34.6
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 6.6e-128 462.6 934 34.7
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 4.6e-121 439.9 444 55.0
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 4.6e-113 413.3 666 38.4
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 5.4e-106 389.8 320 64.7
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 5.8e-92 343.2 294 63.3
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 6.4e-91 339.7 529 39.9
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 2.7e-81 307.8 249 62.2
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 3.3e-79 300.8 254 63.4
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 7.4e-79 299.7 311 53.1
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 3.8e-67 260.8 219 60.7
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 8.4e-67 259.6 682 30.1
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 3.3e-63 247.7 157 75.2
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 4.8e-54 217.2 286 49.3
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 7.7e-52 209.9 936 23.2
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 7.2e-42 176.8 131 71.0
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 2.3e-40 171.8 175 54.9
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 2.8e-38 164.9 208 50.0
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 1.2e-36 159.5 941 23.5
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 3.5e-36 157.9 186 46.8
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 3.5e-36 157.9 205 48.3
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.6e-33 147.9 99 69.7
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 4.7e-33 147.5 102 70.6
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 1.4e-29 136.0 101 68.3
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 1.6e-28 132.5 373 29.5
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 5.5e-26 124.0 362 28.7
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 3.1e-21 108.2 119 52.9
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 5.9e-20 104.0 89 62.9
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.4e-16 92.8 110 44.5
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.4e-16 92.8 110 44.5
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.3e-16 92.0 110 44.5
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.2e-15 89.7 88 48.9
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 7.5e-15 87.0 103 45.6
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 8.9e-08 63.5 106 39.6
CSS0003704 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.6e-07 62.0 110 36.4
MCO11G464 Micromonas commoda HOM05D005961 ORTHO05D034408 9.8e-07 60.1 115 33.0
CBR_g32567 Chara braunii HOM05D001315 ORTHO05D009137 1.7e-06 59.3 139 30.9


User provided reference genes

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