Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004680 Daucus carota HOM05D003624 ORTHO05D004188 2.8e-61 238.4 120 100.0
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 2.5e-17 92.4 57 75.4
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 2.1e-16 89.4 57 73.7
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 2.7e-16 89.0 55 72.7
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 3.6e-16 88.6 57 71.9
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 4.7e-16 88.2 70 68.6
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 4.7e-16 88.2 57 73.7
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 1.0e-15 87.0 57 70.2
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 1.0e-15 87.0 57 68.4
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 1.4e-15 86.7 57 70.2
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 2.3e-15 85.9 55 74.5
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 3.0e-15 85.5 57 71.9
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 4.0e-15 85.1 57 70.2
Actinidia07728 Actinidia chinensis HOM05D003624 ORTHO05D004188 5.2e-15 84.7 57 70.2
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 72.7
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 72.7
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 72.7
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 72.7
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 72.7
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 72.7
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 74.5
Prupe.4G141300 Prunus persica HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 72.7
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 74.5
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 72.7
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 5.2e-15 84.7 55 72.7
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 6.8e-15 84.3 55 72.7
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 6.8e-15 84.3 57 64.9
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 8.8e-15 84.0 56 71.4
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 8.8e-15 84.0 57 68.4
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 8.8e-15 84.0 57 68.4
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 8.8e-15 84.0 56 67.9
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 1.2e-14 83.6 57 66.7
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 1.2e-14 83.6 54 70.4
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 1.2e-14 83.6 56 69.6
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 1.2e-14 83.6 55 69.1
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 1.2e-14 83.6 55 70.9
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 1.2e-14 83.6 55 70.9
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 1.2e-14 83.6 55 70.9
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 1.5e-14 83.2 57 68.4
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.5e-14 83.2 55 70.9
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 1.5e-14 83.2 55 70.9
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 1.5e-14 83.2 55 69.1
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.5e-14 83.2 54 74.1
Lj8P413T16 Lonicera japonica HOM05D003624 ORTHO05D004188 1.5e-14 83.2 54 74.1
Lj8P417T12 Lonicera japonica HOM05D003624 ORTHO05D004188 1.5e-14 83.2 54 74.1
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 2.0e-14 82.8 55 69.1
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 2.6e-14 82.4 55 67.3
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 2.6e-14 82.4 57 66.7
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 2.6e-14 82.4 56 66.1
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 3.4e-14 82.0 55 67.3
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 3.4e-14 82.0 55 67.3
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 3.4e-14 82.0 57 68.4
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 3.4e-14 82.0 57 63.2
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 3.4e-14 82.0 55 67.3
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 3.4e-14 82.0 55 69.1
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 3.4e-14 82.0 55 69.1
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 3.4e-14 82.0 55 69.1
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 3.4e-14 82.0 55 69.1
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 4.4e-14 81.6 55 67.3
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 4.4e-14 81.6 57 64.9
ATR0691G167 Amborella trichopoda HOM05D003624 ORTHO05D004188 5.7e-14 81.3 55 67.3
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 7.5e-14 80.9 55 67.3
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 7.5e-14 80.9 57 68.4
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 7.5e-14 80.9 57 68.4
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 7.5e-14 80.9 57 68.4
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 9.8e-14 80.5 55 65.5
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 9.8e-14 80.5 55 65.5
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 9.8e-14 80.5 55 65.5
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 9.8e-14 80.5 55 65.5
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 9.8e-14 80.5 55 65.5
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 9.8e-14 80.5 55 65.5
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 9.8e-14 80.5 55 65.5
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 9.8e-14 80.5 57 64.9
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 1.3e-13 80.1 57 71.9
arahy.Tifrunner.gnm1.ann1.8ZK91E Arachis hypogaea HOM05D003624 ORTHO05D004188 1.3e-13 80.1 57 71.9
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 1.3e-13 80.1 55 63.6
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 1.3e-13 80.1 55 69.1
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 1.3e-13 80.1 57 66.7
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 1.7e-13 79.7 55 65.5
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 1.7e-13 79.7 57 64.9
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 2.2e-13 79.3 57 61.4
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 2.8e-13 79.0 57 64.9
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 2.8e-13 79.0 55 65.5
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 2.8e-13 79.0 57 66.7
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 3.7e-13 78.6 57 68.4
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 3.7e-13 78.6 57 59.6
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 3.7e-13 78.6 55 61.8
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 3.7e-13 78.6 57 64.9
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 3.7e-13 78.6 57 64.9
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 3.7e-13 78.6 57 64.9
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 4.8e-13 78.2 55 63.6
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 4.8e-13 78.2 55 63.6
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 6.3e-13 77.8 55 70.9
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 8.3e-13 77.4 55 63.6
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 8.3e-13 77.4 57 66.7
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 8.3e-13 77.4 57 66.7
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 1.1e-12 77.0 55 61.8
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 1.1e-12 77.0 55 63.6
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 1.1e-12 77.0 55 63.6
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 1.1e-12 77.0 55 63.6
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 1.1e-12 77.0 55 63.6
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 1.1e-12 77.0 55 63.6
CARHR218910 Cardamine hirsuta HOM05D003624 ORTHO05D004188 1.1e-12 77.0 55 60.0
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.1e-12 77.0 57 59.6
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 1.1e-12 77.0 57 66.7
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 1.1e-12 77.0 55 61.8
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 1.4e-12 76.6 55 61.8
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 1.4e-12 76.6 55 61.8
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 1.4e-12 76.6 57 68.4
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 1.4e-12 76.6 57 68.4
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 1.4e-12 76.6 55 69.1
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 1.4e-12 76.6 55 69.1
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 1.4e-12 76.6 55 69.1
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 1.8e-12 76.3 55 60.0
MD07G1197800 Malus domestica HOM05D003624 ORTHO05D004188 1.8e-12 76.3 54 70.4
QL08p059869 Quercus lobata HOM05D003624 ORTHO05D004188 1.8e-12 76.3 57 64.9
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.8e-12 76.3 55 63.6
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 2.4e-12 75.9 57 57.9
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 2.4e-12 75.9 55 69.1
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 2.4e-12 75.9 55 60.0
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 2.4e-12 75.9 55 60.0
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 3.1e-12 75.5 55 67.3
Ca_06298_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 4.1e-12 75.1 55 69.1
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 4.1e-12 75.1 55 69.1
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 4.1e-12 75.1 55 69.1
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 5.4e-12 74.7 55 61.8
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 5.4e-12 74.7 54 70.4
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 5.4e-12 74.7 55 67.3
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 7.0e-12 74.3 52 63.5
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 9.1e-12 73.9 55 67.3
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 9.1e-12 73.9 55 67.3
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 1.6e-11 73.2 55 61.8
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 1.6e-11 73.2 55 60.0
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 2.7e-11 72.4 54 61.1
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 3.5e-11 72.0 57 59.6
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 4.5e-11 71.6 57 59.6
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 4.5e-11 71.6 57 59.6
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 5.9e-11 71.2 57 57.9
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 5.9e-11 71.2 57 57.9
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 1.0e-10 70.5 53 60.4
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 2.3e-10 69.3 56 58.9
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 5.5e-09 64.7 41 75.6
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 9.5e-09 63.9 41 73.2
SEGI_08994 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.6e-08 63.2 44 63.6
SEGI_35739 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.6e-08 63.2 44 63.6
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 2.8e-08 62.4 55 49.1
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 2.8e-08 62.4 55 49.1
RcHm_v2.0_Chr4g0406611 Rosa chinensis HOM05D003624 ORTHO05D004188 3.6e-08 62.0 64 53.1
arahy.Tifrunner.gnm1.ann1.P0I32D Arachis hypogaea HOM05D003624 ORTHO05D004188 6.1e-08 61.2 52 61.5
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 8.9e-07 57.4 55 50.9
Prupe.4G141400 Prunus persica HOM05D003624 ORTHO05D004188 1.2e-06 57.0 36 75.0
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 2.0e-06 56.2 40 62.5
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 5.7e-06 54.7 34 73.5


User provided reference genes

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