Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 0.0e+00 1422.5 704 100.0
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.9e-311 1072.0 716 73.5
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 2.1e-310 1068.5 716 73.2
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 3.4e-308 1061.2 721 73.0
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 4.9e-307 1057.4 719 71.3
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 2.1e-302 1042.0 722 70.6
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.7e-299 1032.3 717 69.5
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 4.2e-298 1027.7 725 69.4
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 4.2e-298 1027.7 725 68.8
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 7.9e-297 1023.5 720 70.8
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 4.3e-295 1017.7 690 70.7
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.3e-294 1016.1 715 69.7
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.3e-294 1016.1 721 70.5
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 2.1e-294 1015.4 716 69.0
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 3.7e-294 1014.6 715 69.5
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 8.2e-294 1013.4 716 69.4
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 6.9e-293 1010.4 716 69.6
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.5e-292 1009.2 722 69.8
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 4.5e-292 1007.7 716 69.1
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 5.8e-292 1007.3 720 69.2
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 3.8e-291 1004.6 716 69.3
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 4.9e-291 1004.2 716 69.1
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 5.5e-290 1000.7 710 69.4
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 1.2e-289 999.6 703 69.1
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 4.6e-289 997.7 722 68.8
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 6.0e-289 997.3 726 68.0
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 7.9e-289 996.9 722 68.8
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 8.7e-288 993.4 719 68.4
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 1.1e-287 993.0 723 67.8
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 1.1e-287 993.0 735 68.0
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 9.7e-287 989.9 716 69.0
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 2.8e-286 988.4 723 68.5
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 2.6e-284 981.9 710 68.5
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.3e-283 979.5 716 68.0
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 5.0e-283 977.6 719 66.9
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 7.2e-282 973.8 723 67.2
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.6e-281 972.6 689 68.8
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 7.9e-281 970.3 710 66.6
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 7.9e-281 970.3 714 67.6
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 1.3e-280 969.5 719 65.8
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 2.3e-280 968.8 710 65.9
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 3.0e-280 968.4 717 66.2
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 3.9e-280 968.0 716 66.3
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 1.3e-278 963.0 706 66.6
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 5.3e-277 957.6 702 66.0
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 6.9e-277 957.2 700 65.7
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 9.1e-277 956.8 705 67.8
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.5e-276 956.1 712 66.7
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 5.9e-276 954.1 702 66.1
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.3e-275 953.0 702 67.1
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 3.8e-275 951.4 705 66.1
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 8.5e-275 950.3 715 64.5
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 8.5e-275 950.3 720 66.1
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 7.2e-274 947.2 705 66.0
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 1.6e-273 946.0 659 71.2
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 1.6e-273 946.0 712 64.7
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 2.1e-273 945.7 687 65.6
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 1.0e-272 943.3 715 64.1
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 5.1e-272 941.0 714 64.0
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.7e-270 936.0 687 65.1
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 6.3e-270 934.1 715 63.6
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 2.4e-269 932.2 721 63.8
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 2.4e-269 932.2 658 69.0
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 4.1e-269 931.4 716 63.0
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 9.1e-269 930.2 689 64.6
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 2.0e-268 929.1 689 64.6
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.4e-268 928.3 706 67.7
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 5.9e-268 927.5 721 63.4
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.0e-267 926.8 629 71.7
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 4.2e-266 921.4 724 62.8
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 1.2e-265 919.8 724 64.0
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 6.1e-265 917.5 723 63.3
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.9e-264 914.8 981 51.9
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 6.7e-264 914.1 732 61.3
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.1e-261 906.7 718 61.7
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.1e-261 905.2 587 73.4
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 1.5e-258 896.3 542 78.6
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 5.5e-258 894.4 727 63.8
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 4.7e-257 891.3 629 67.9
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 8.0e-257 890.6 719 63.4
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 5.2e-256 887.9 625 68.0
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 2.8e-254 882.1 719 60.6
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 3.7e-254 881.7 704 63.1
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 6.5e-251 870.9 733 60.0
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 2.3e-248 862.4 721 59.5
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 4.0e-248 861.7 635 66.1
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 5.7e-247 857.8 722 59.3
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 2.2e-246 855.9 732 59.2
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 2.7e-244 849.0 725 58.5
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.7e-243 846.3 715 61.3
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.6e-241 839.7 583 69.0
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 4.7e-241 838.2 653 63.1
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 1.5e-239 833.2 874 51.7
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 2.8e-225 785.8 582 64.6
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 6.8e-224 781.2 976 47.5
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 5.8e-199 698.4 453 74.0
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 2.9e-198 696.0 719 53.1
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 3.5e-180 636.0 475 65.7
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 2.5e-173 613.2 748 45.5
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 2.5e-162 576.6 704 43.9
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 1.4e-152 544.3 363 71.6
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 5.9e-151 538.9 646 44.9
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.5e-133 480.3 439 55.4
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 1.7e-118 431.0 348 57.8
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 4.6e-103 379.8 286 61.5
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 4.4e-98 363.2 226 79.6
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.7e-94 351.3 254 68.5
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 6.0e-87 326.2 291 59.8
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.6e-71 273.5 167 83.2
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 3.9e-70 270.4 261 51.7
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 3.7e-68 263.8 254 51.2
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 5.8e-58 229.9 149 65.8
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 1.9e-40 171.8 154 58.4
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 7.4e-37 159.8 228 35.5
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.7e-33 148.7 220 36.8
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.2e-31 142.5 228 32.9
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.2e-31 142.5 124 56.5
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-30 139.4 170 40.0
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.7e-28 132.1 107 64.5
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 7.7e-26 123.2 98 58.2
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 8.5e-25 119.8 117 52.1
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 7.2e-24 116.7 82 64.6
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 9.4e-24 116.3 114 53.5
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 4.7e-23 114.0 109 53.2
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 2.3e-22 111.7 69 72.5
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 9.8e-21 106.3 136 36.8
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 2.8e-20 104.8 75 74.7
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 4.8e-20 104.0 109 50.5
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 8.3e-20 103.2 633 22.0
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 1.4e-19 102.4 104 53.8
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.4e-19 102.4 109 49.5
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 3.1e-19 101.3 102 55.9
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 5.4e-19 100.5 69 66.7
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.2e-18 99.4 113 51.3
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.6e-18 99.0 121 46.3
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 4.5e-18 97.4 66 66.7
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 4.5e-18 97.4 61 70.5
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 4.7e-15 87.4 55 78.2
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-15 87.0 254 29.1
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.4e-14 85.9 65 66.2
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 6.8e-14 83.6 129 41.1
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 6.8e-14 83.6 70 60.0
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.0e-13 82.0 78 48.7
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 7.5e-13 80.1 57 64.9
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 1.7e-12 79.0 237 27.0
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 3.7e-12 77.8 57 63.2
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 3.7e-12 77.8 57 63.2
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 4.1e-11 74.3 55 60.0
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 7.0e-11 73.6 57 59.6
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 1.2e-10 72.8 56 62.5
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 3.5e-10 71.2 48 72.9
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 5.9e-10 70.5 345 21.2
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 1.5e-08 65.9 104 42.3


User provided reference genes

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