Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 0.0e+00 1161.4 654 100.0
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 8.5e-253 877.1 654 80.3
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.6e-222 776.5 660 69.2
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 2.7e-222 775.8 658 72.5
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 5.6e-204 714.9 642 67.0
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 3.6e-203 712.2 665 67.1
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 6.2e-203 711.4 665 64.5
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 8.0e-203 711.1 668 62.9
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 3.1e-202 709.1 662 63.4
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.9e-200 702.6 666 64.4
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.4e-199 700.3 664 65.2
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 2.4e-199 699.5 666 66.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 2.4e-199 699.5 666 63.5
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 2.7e-198 696.0 667 63.4
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 6.0e-198 694.9 664 64.0
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 7.8e-198 694.5 664 60.7
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 2.5e-196 689.5 666 62.2
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 7.3e-196 688.0 665 61.5
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 2.8e-195 686.0 668 63.8
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 4.7e-195 685.3 664 61.9
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 4.7e-195 685.3 667 63.0
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 6.2e-195 684.9 663 62.3
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 6.2e-195 684.9 665 62.1
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 8.1e-195 684.5 666 61.6
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.1e-194 684.1 667 65.8
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 2.3e-194 682.9 656 64.0
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 4.0e-194 682.2 662 61.9
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.2e-193 680.6 668 63.2
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.4e-193 679.1 668 63.0
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 7.5e-193 677.9 668 63.2
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.2e-192 676.4 664 64.9
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 3.7e-192 675.6 668 62.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 6.4e-192 674.9 669 59.9
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.9e-191 673.3 664 64.8
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.9e-191 673.3 664 64.8
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 3.2e-191 672.5 667 60.3
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 9.2e-191 671.0 665 62.6
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 1.7e-189 666.8 666 61.1
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.9e-189 665.6 662 59.7
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.9e-189 665.6 662 59.7
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.1e-188 664.1 671 59.3
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.5e-188 662.9 661 59.0
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 3.3e-188 662.5 666 60.1
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-187 660.6 662 61.0
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.2e-187 660.6 672 59.2
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 6.2e-187 658.3 666 63.5
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 8.1e-187 657.9 665 59.4
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.1e-186 657.5 674 60.5
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 2.3e-186 656.4 661 58.9
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 2.3e-186 656.4 615 63.6
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.1e-186 656.0 659 61.0
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 5.8e-185 651.7 667 60.6
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.3e-184 650.6 668 59.3
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 2.2e-184 649.8 662 59.5
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.9e-184 649.4 676 58.6
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 1.1e-183 647.5 542 68.3
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 3.2e-183 646.0 662 62.8
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 4.1e-183 645.6 660 58.9
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 5.4e-183 645.2 670 58.5
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 3.5e-182 642.5 663 61.7
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 4.6e-182 642.1 663 61.5
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 4.6e-182 642.1 663 61.8
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.3e-181 639.8 676 57.8
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.5e-180 637.1 666 59.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.2e-179 634.0 678 61.2
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 2.8e-179 632.9 664 58.7
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 2.8e-179 632.9 662 58.6
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 1.4e-178 630.6 663 57.5
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 4.0e-178 629.0 663 59.3
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 1.5e-177 627.1 677 61.9
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.7e-176 623.6 665 57.4
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 2.2e-176 623.2 665 60.2
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.4e-175 620.5 664 57.2
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.9e-175 620.2 662 56.9
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 2.4e-175 619.8 659 59.3
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 4.2e-175 619.0 662 56.9
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 3.9e-173 612.5 665 56.2
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 4.3e-172 609.0 662 58.8
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.6e-171 607.1 656 56.4
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 2.8e-171 606.3 673 61.2
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 8.1e-171 604.7 666 55.4
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 2.4e-170 603.2 666 57.1
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 4.0e-170 602.4 662 56.6
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 1.5e-169 600.5 663 56.1
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 2.6e-169 599.7 664 55.4
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 4.5e-169 599.0 659 56.0
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 8.4e-168 594.7 666 53.6
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.1e-167 594.3 662 55.7
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-167 594.0 666 55.1
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.9e-167 593.6 665 56.8
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.9e-167 593.6 665 56.8
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.4e-167 593.2 664 55.0
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.4e-167 593.2 664 54.8
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 4.2e-167 592.4 661 55.2
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 5.4e-167 592.0 662 55.3
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 7.1e-167 591.7 665 55.0
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.5e-166 589.3 550 62.5
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.5e-166 589.3 550 62.5
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 4.6e-166 589.0 665 58.0
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 4.6e-166 589.0 660 57.3
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 1.3e-165 587.4 671 58.4
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.3e-165 586.6 666 55.0
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 3.0e-165 586.3 678 54.6
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.9e-165 585.9 609 59.4
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 8.7e-165 584.7 665 55.3
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.5e-164 583.2 663 54.0
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.3e-163 580.9 660 55.2
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.6e-163 580.5 656 54.1
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-163 580.5 660 55.3
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.7e-163 579.3 661 54.5
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 2.4e-162 576.6 668 54.8
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 4.0e-162 575.9 665 58.3
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 1.2e-161 574.3 664 53.3
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.3e-160 570.9 675 55.4
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 6.4e-160 568.5 667 52.6
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 5.5e-159 565.5 663 52.8
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 4.6e-158 562.4 661 54.0
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-156 557.8 664 52.7
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 1.1e-156 557.8 671 51.7
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 3.3e-156 556.2 677 51.0
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.4e-156 555.1 686 51.5
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 2.1e-155 553.5 662 55.4
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.1e-154 549.7 659 51.4
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 6.9e-154 548.5 662 52.7
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.5e-152 542.0 675 51.4
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 8.4e-152 541.6 653 51.6
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 1.1e-151 541.2 670 51.9
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.3e-149 534.3 656 50.3
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 3.9e-149 532.7 674 50.3
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 7.4e-148 528.5 568 56.2
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.1e-146 524.6 654 51.5
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.8e-146 523.9 662 51.8
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 8.5e-144 515.0 667 50.4
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 4.2e-143 512.7 686 47.8
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 3.6e-142 509.6 690 51.3
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.8e-141 507.3 692 47.7
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.1e-140 504.6 665 49.9
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 3.3e-140 503.1 686 47.7
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.3e-139 501.1 668 49.6
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 8.2e-139 498.4 674 46.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 1.0e-136 491.5 667 48.1
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.0e-133 481.5 662 47.1
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.8e-133 480.7 630 49.7
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 8.8e-133 478.4 659 46.7
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 3.1e-130 469.9 544 53.1
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 4.2e-127 459.5 523 52.6
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.8e-117 427.6 651 45.9
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 2.2e-112 410.6 404 66.8
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.7e-110 403.7 684 45.8
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 4.0e-109 399.8 623 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.2e-108 398.3 667 42.0
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 5.6e-95 352.8 422 52.6
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 2.0e-92 344.4 403 53.1
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 2.9e-91 340.5 405 54.6
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.5e-87 328.2 311 60.5
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 2.3e-85 320.9 660 39.5
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.9e-83 313.9 671 36.8
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 6.4e-83 312.8 462 44.8
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.3e-77 294.3 557 38.6
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 2.7e-73 280.8 651 39.0
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.0e-72 277.3 235 67.7
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.6e-70 271.6 543 39.4
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.6e-57 228.4 630 31.0
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 2.4e-50 204.5 272 43.4
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 1.4e-29 135.6 119 58.0
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 1.4e-26 125.6 77 81.8
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.7e-25 121.3 109 57.8
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 6.7e-24 116.7 227 43.6
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 7.4e-23 113.2 93 67.7
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.5e-20 105.5 156 47.4
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.7e-19 102.1 131 42.7
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 3.6e-17 94.4 58 72.4
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.4e-15 87.4 78 65.4
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.8e-14 84.7 74 62.2
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.0e-11 76.3 125 43.2
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 1.0e-08 66.2 46 63.0
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.4e-08 65.9 611 21.6
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 4.4e-07 60.8 78 51.3
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 7.4e-07 60.1 501 22.6
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.3e-06 59.3 411 22.1


User provided reference genes

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