Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 0.0e+00 1763.4 914 100.0
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 2.9e-283 978.8 912 58.7
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.4e-240 837.0 950 51.3
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 6.1e-217 758.4 924 49.0
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.0e-212 743.4 926 49.4
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 2.3e-211 740.0 923 48.3
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 3.6e-209 732.6 991 46.2
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 2.3e-208 729.9 918 47.8
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 1.5e-207 727.2 918 46.7
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 2.0e-207 726.9 943 47.2
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.4e-207 726.1 918 46.6
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.3e-206 724.2 919 47.9
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.1e-205 721.1 918 48.0
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 1.1e-205 721.1 919 47.9
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 1.9e-205 720.3 956 47.1
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 4.1e-205 719.2 918 46.6
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 5.0e-203 712.2 947 46.4
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.3e-202 709.5 914 46.8
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 1.8e-200 703.7 928 46.6
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.2e-199 701.0 931 46.7
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.5e-199 700.7 912 46.1
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.0e-199 700.3 943 46.2
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 4.4e-199 699.1 882 48.1
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 3.7e-198 696.0 989 43.2
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 1.1e-197 694.5 950 44.3
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 4.1e-197 692.6 922 44.9
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 3.5e-196 689.5 914 46.3
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 3.9e-195 686.0 911 46.4
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.1e-194 684.5 928 45.2
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 2.5e-194 683.3 911 45.6
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 3.6e-193 679.5 954 44.5
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 1.3e-190 671.0 953 43.4
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 2.9e-190 669.8 830 48.2
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 2.7e-188 663.3 1015 43.1
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 5.6e-186 655.6 939 44.1
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.8e-185 653.3 989 43.0
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 4.7e-185 652.5 958 42.5
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.1e-184 651.4 926 45.4
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 3.4e-183 646.4 944 44.3
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 5.8e-183 645.6 959 43.2
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 7.6e-183 645.2 939 43.9
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.9e-181 640.6 950 43.2
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 4.2e-181 639.4 950 42.4
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 4.2e-181 639.4 859 45.8
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 7.8e-180 635.2 953 44.0
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 3.9e-179 632.9 953 43.9
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 8.7e-179 631.7 919 43.2
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 3.3e-178 629.8 926 43.1
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 1.4e-176 624.4 940 43.1
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.4e-176 624.4 958 43.2
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 3.1e-176 623.2 940 43.1
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.1e-176 623.2 842 46.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.5e-175 620.9 926 42.7
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 7.6e-175 618.6 866 45.2
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 1.9e-173 614.0 939 42.7
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 2.4e-173 613.6 990 41.3
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 4.2e-173 612.8 938 42.2
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 7.1e-173 612.1 991 41.3
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 7.1e-173 612.1 906 42.4
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 6.0e-172 609.0 991 41.1
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 1.3e-171 607.8 810 45.6
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 5.1e-171 605.9 913 42.8
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.1e-170 604.7 993 41.1
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.9e-170 604.0 947 42.6
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.3e-169 601.3 1014 40.4
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.6e-169 600.9 912 42.4
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.1e-168 598.2 965 40.1
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.4e-168 597.8 929 41.1
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 6.9e-168 595.5 905 42.4
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.5e-167 594.3 784 46.9
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 2.0e-167 594.0 993 40.1
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 7.1e-165 585.5 843 45.0
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 1.8e-163 580.9 945 40.3
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 3.3e-162 576.6 900 41.8
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 4.3e-162 576.2 941 40.4
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 1.6e-161 574.3 947 39.8
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 2.8e-161 573.5 956 39.6
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 3.7e-161 573.2 910 41.1
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 1.7e-158 564.3 952 41.4
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 2.5e-157 560.5 907 41.1
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.2e-157 559.7 1086 37.3
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 8.7e-155 552.0 958 39.2
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 6.3e-153 545.8 962 39.2
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 9.0e-152 542.0 893 40.0
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 7.2e-149 532.3 924 38.4
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 3.9e-147 526.6 788 43.1
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.5e-146 524.6 1010 37.3
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 1.5e-146 524.6 1002 36.9
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 2.5e-146 523.9 736 44.2
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 4.8e-145 519.6 823 41.8
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 8.5e-142 508.8 1044 35.9
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.4e-141 508.1 926 38.1
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 2.5e-141 507.3 922 38.5
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 5.5e-141 506.1 921 38.9
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.0e-139 501.9 917 37.7
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.0e-138 497.7 955 37.3
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 5.7e-138 496.1 941 36.7
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.6e-135 487.3 937 36.4
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 2.6e-135 487.3 925 37.8
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 1.3e-134 485.0 935 37.3
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 2.9e-134 483.8 938 35.7
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 3.8e-134 483.4 939 36.0
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.4e-133 481.5 941 35.4
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 4.2e-133 479.9 930 36.0
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 2.7e-132 477.2 927 37.5
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 2.0e-122 444.5 551 47.9
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.1e-120 438.7 916 35.7
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 4.2e-117 426.8 577 45.1
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 6.1e-116 422.9 986 35.1
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.0e-115 422.2 676 40.2
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 5.7e-114 416.4 553 45.2
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 5.9e-111 406.4 546 45.2
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.9e-109 401.4 601 43.6
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 1.6e-108 398.3 1019 31.5
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 3.2e-96 357.5 748 34.4
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.0e-94 352.4 543 40.5
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 8.0e-92 342.8 996 30.1
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 3.1e-91 340.9 752 35.0
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 1.4e-88 332.0 749 33.5
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 7.8e-87 326.2 528 40.5
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 7.8e-87 326.2 585 39.0
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 2.3e-86 324.7 753 32.7
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 8.6e-86 322.8 467 42.0
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 3.3e-85 320.9 771 31.9
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.2e-84 318.9 528 38.8
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 6.2e-84 316.6 996 29.6
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 5.8e-82 310.1 364 49.5
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 2.9e-81 307.8 707 32.8
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.2e-76 290.0 1060 27.5
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 2.0e-74 285.0 479 37.4
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.5e-71 274.2 267 56.6
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.7e-70 271.9 462 37.9
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 1.6e-68 265.4 1032 27.8
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.2e-63 249.2 264 51.1
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 1.6e-63 248.8 333 44.1
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 6.0e-63 246.9 679 32.4
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.1e-59 236.1 321 42.7
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 5.4e-56 223.8 260 49.6
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 6.2e-52 210.3 341 41.1
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 1.5e-50 205.7 368 40.8
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 1.5e-50 205.7 365 40.5
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 1.6e-47 195.7 488 33.8
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.8e-44 184.9 240 44.2
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 2.8e-44 184.9 355 37.2
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 6.5e-41 173.7 313 36.7
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.4e-40 172.6 279 43.7
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.9e-40 172.2 382 33.8
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 1.1e-35 156.4 334 36.5
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 5.0e-33 147.5 147 49.0
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.2e-32 144.4 184 42.9
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.0e-26 125.6 226 38.9
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 3.8e-25 121.3 198 40.9
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.1e-23 115.5 180 41.7
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 2.1e-23 115.5 128 48.4
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 5.1e-22 110.9 175 43.4
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-21 109.4 249 35.3
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 2.6e-21 108.6 192 39.6
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 9.1e-19 100.1 201 40.3
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 2.0e-18 99.0 182 33.0
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.3e-17 96.3 173 38.7
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.1e-16 93.2 155 37.4
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 7.2e-16 90.5 91 56.0
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 4.7e-15 87.8 154 37.0
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 3.9e-14 84.7 82 58.5
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.5e-13 82.8 119 45.4
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 2.6e-13 82.0 184 34.8
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 1.7e-12 79.3 223 31.8
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 1.1e-11 76.6 80 53.8
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 2.4e-11 75.5 77 45.5
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 9.1e-11 73.6 76 44.7
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 5.9e-10 70.9 111 35.1
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 1.6e-07 62.8 65 49.2
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 1.6e-07 62.8 76 48.7
HanXRQChr02g0048981 Helianthus annuus HOM05D003625 ORTHO05D004382 2.3e-06 58.9 95 42.1
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 2.3e-06 58.9 93 37.6
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 2.3e-06 58.9 95 34.7
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 4.0e-06 58.2 124 33.1
HanXRQChr16g0513531 Helianthus annuus HOM05D003625 ORTHO05D222387 8.8e-06 57.0 87 34.5


User provided reference genes

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