Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 1.9e-89 332.4 164 100.0
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.2e-57 226.9 154 70.8
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.2e-57 226.9 154 70.8
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 9.8e-57 223.8 160 65.6
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 1.2e-54 216.9 153 69.3
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 4.5e-54 214.9 148 70.3
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 4.5e-54 214.9 154 68.8
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 1.0e-53 213.8 165 66.1
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 1.1e-52 210.3 153 66.7
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 1.9e-52 209.5 156 67.3
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 2.5e-52 209.1 148 66.9
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 3.3e-52 208.8 156 66.7
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 9.5e-52 207.2 160 63.8
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 1.6e-51 206.5 159 66.0
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 1.6e-51 206.5 158 66.5
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 1.6e-51 206.5 165 64.8
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 3.6e-51 205.3 160 66.2
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 4.7e-51 204.9 153 62.7
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 6.1e-51 204.5 153 62.1
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 6.1e-51 204.5 153 62.7
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 1.4e-50 203.4 153 64.7
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 1.8e-50 203.0 158 65.2
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 1.8e-50 203.0 163 64.4
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 1.8e-50 203.0 167 62.3
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 3.0e-50 202.2 153 64.1
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 3.0e-50 202.2 159 67.9
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 8.9e-50 200.7 153 63.4
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 1.5e-49 199.9 156 62.2
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 2.6e-49 199.1 158 62.7
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 3.4e-49 198.7 158 63.3
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 3.4e-49 198.7 158 62.7
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 5.7e-49 198.0 162 59.9
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 9.8e-49 197.2 161 65.2
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 1.7e-48 196.4 158 62.0
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 6.3e-48 194.5 159 60.4
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 6.3e-48 194.5 156 63.5
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 2.4e-47 192.6 156 61.5
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 5.4e-47 191.4 156 64.1
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 7.0e-47 191.0 156 63.5
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 1.6e-46 189.9 156 62.2
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 2.0e-46 189.5 154 61.0
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 5.9e-46 188.0 164 61.0
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 5.9e-46 188.0 158 62.7
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 1.0e-45 187.2 156 58.3
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 1.3e-45 186.8 165 60.6
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.3e-45 186.0 156 58.3
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 2.3e-45 186.0 154 58.4
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 2.9e-45 185.7 156 62.2
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 5.0e-45 184.9 155 62.6
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.6e-45 184.5 157 57.3
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 1.1e-44 183.7 155 59.4
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 2.5e-44 182.6 166 55.4
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 2.5e-44 182.6 159 60.4
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 3.3e-44 182.2 156 60.9
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.3e-44 181.8 160 61.9
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.6e-44 181.4 152 58.6
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 4.7e-43 178.3 154 56.5
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 1.8e-42 176.4 155 58.7
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 2.3e-42 176.0 156 58.3
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 2.3e-42 176.0 158 56.3
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 3.0e-42 175.6 161 54.7
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 5.2e-42 174.9 163 55.8
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 5.2e-42 174.9 157 59.9
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 2.6e-41 172.6 158 54.4
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 3.4e-41 172.2 155 55.5
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 3.4e-41 172.2 158 56.3
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 4.4e-41 171.8 158 54.4
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 7.5e-41 171.0 161 53.4
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 4.9e-40 168.3 153 52.3
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 8.3e-40 167.5 146 56.2
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.1e-39 167.2 153 52.3
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.1e-39 167.2 148 54.1
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 2.4e-39 166.0 158 52.5
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 2.4e-39 166.0 158 51.9
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 4.1e-39 165.2 167 50.9
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 4.1e-39 165.2 154 52.6
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 5.4e-39 164.9 158 51.3
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 7.0e-39 164.5 157 52.2
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 9.2e-39 164.1 119 63.0
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.2e-38 163.7 141 59.6
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 1.2e-38 163.7 158 51.3
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 2.7e-38 162.5 158 50.6
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 3.5e-38 162.2 152 52.0
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 3.5e-38 162.2 152 53.3
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 7.8e-38 161.0 158 50.6
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 7.8e-38 161.0 157 51.0
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 1.7e-37 159.8 161 52.8
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 2.3e-37 159.5 158 50.0
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 2.3e-37 159.5 158 50.0
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 2.3e-37 159.5 150 52.0
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 6.6e-37 157.9 158 49.4
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 8.6e-37 157.5 158 49.4
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 2.8e-35 152.5 158 47.5
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 2.8e-35 152.5 163 48.5
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 4.7e-35 151.8 126 63.5
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 1.5e-33 146.7 148 54.1
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 2.0e-33 146.4 171 43.3
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 2.6e-33 146.0 156 46.8
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 2.6e-33 146.0 156 54.5
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 6.4e-32 141.4 153 47.7
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 8.3e-32 141.0 119 63.9
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 6.0e-30 134.8 156 44.2
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 3.9e-29 132.1 152 40.1
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 5.0e-29 131.7 153 43.8
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 4.3e-28 128.6 162 46.3
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 2.1e-27 126.3 160 46.2
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 8.1e-27 124.4 154 41.6
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 1.2e-25 120.6 155 47.1
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 1.5e-25 120.2 159 45.9
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 1.4e-23 113.6 149 36.9
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 1.1e-20 104.0 140 45.7
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 9.2e-15 84.3 69 60.9
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 4.3e-12 75.5 101 42.6
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 8.1e-11 71.2 113 34.5
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 1.9e-07 60.1 60 53.3
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 1.6e-06 57.0 141 31.2
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 3.5e-06 55.8 111 34.2
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 7.8e-06 54.7 111 28.8


User provided reference genes

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